View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11867_high_9 (Length: 542)
Name: NF11867_high_9
Description: NF11867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11867_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 402; Significance: 0; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 18 - 532
Target Start/End: Original strand, 39470878 - 39471392
Alignment:
| Q |
18 |
gttatcatggttgattagaagcttggcgaactctacggcagaaactagatgacctacagcgggaaaagggataaacaccacttccactgtcttcatgttg |
117 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
39470878 |
gttatcatggttgattagaagcttggcgaactctaaggcagaaactagatgacctacagcgggaaaagggataaacaccacttccactttcttcatgttg |
39470977 |
T |
|
| Q |
118 |
gagcacaagacatacacttactcagtgtgagttactgtttctctgaattgttctttgatatacctgnnnnnnnnn-cctttctttaggaacaggaataga |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
39470978 |
gagcacaagacatacacttactcagtgtgagttactgtttctctgaattgttctttgatatacctgttttttttttcctttctttaggaacaggaataga |
39471077 |
T |
|
| Q |
217 |
tgaattcgtgtagagatttagtatcataataaaagaaatctttgtgagtgatgtcatggctttgcgggatggcatgatatgagaactttatggcatgaga |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39471078 |
tgaattcgtgtagagatttagtatcataataaaagaaacctttgtgagtgatgtcatggctttgcgggatggcatgatatgagaactttatggcatgaga |
39471177 |
T |
|
| Q |
317 |
ttgaaatgtttgtctttatattatttatgggagaattgatggatggtgaaggctatttactactaccttatatatggaccgtgcaagtttttgtggtgta |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39471178 |
ttgaaatgtttgtctttatattatttatgggagaattgatggatggtgaaggctatttactactaccttatatatggaccgtgcaagtttttgtggtgta |
39471277 |
T |
|
| Q |
417 |
caagaatatgtaaaaactatctgnnnnnnnnnnnnnnnnnntgtaaaactagattgttgttattatcttgttggaattatttattattcaataatatgtg |
516 |
Q |
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||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39471278 |
caagaatatgtaaaaactatctg-aaaaaaggaaaaaaaaatgtaaaactggattgttgttattatcttgttggaattatttattattcaataatatgtg |
39471376 |
T |
|
| Q |
517 |
tggtgtgtggtctgtg |
532 |
Q |
| |
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||||||||||| |||| |
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| T |
39471377 |
tggtgtgtggtgtgtg |
39471392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 18 - 179
Target Start/End: Original strand, 39464655 - 39464816
Alignment:
| Q |
18 |
gttatcatggttgattagaagcttggcgaactctacggcagaaactagatgacctacagcgggaaaagggataaacaccacttccactgtcttcatgttg |
117 |
Q |
| |
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||||||| |||||||||||||||| || ||||| | |||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||| ||| |
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| T |
39464655 |
gttatcacggttgattagaagcttcgcaaactcaagggcagaaactagatgacctacagcgggaaaagggataaacactacttctgctttcttcattttg |
39464754 |
T |
|
| Q |
118 |
gagcacaagacatacacttactcagtgtgagttactgtttctctgaattgttctttgatata |
179 |
Q |
| |
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|||||| ||||| ||||||||| || |||||| ||||| ||||||||||| ||||||||| |
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|
| T |
39464755 |
aagcacaggacatgcacttactcggtttgagttgatgtttttctgaattgttgtttgatata |
39464816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 19 - 180
Target Start/End: Complemental strand, 39460297 - 39460139
Alignment:
| Q |
19 |
ttatcatggttgattagaagcttggcgaactctacggcagaaactagatgacctacagcgggaaaagggataaacaccacttccactgtcttcatgttgg |
118 |
Q |
| |
|
|||||| ||||| |||||||||| |||||||| | || ||| ||||||| | | ||||||||||||||||||| ||||| || ||||||| |||| |
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| T |
39460297 |
ttatcacggttggttagaagctttgcgaactcaagggtggaatctagatggctcggaccgggaaaagggataaacacaacttctgctttcttcatcttgg |
39460198 |
T |
|
| Q |
119 |
agcacaagacatacacttactcagtgtgagttactgtttctctgaattgttctttgatatac |
180 |
Q |
| |
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|||||| || |||| ||||||| ||| ||||||||||| | |||||||||||||||||||| |
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|
| T |
39460197 |
agcacaggatatacccttactc--tgtaagttactgttt-tttgaattgttctttgatatac |
39460139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 18 - 124
Target Start/End: Complemental strand, 39472084 - 39471978
Alignment:
| Q |
18 |
gttatcatggttgattagaagcttggcgaactctacggcagaaactagatgacctacagcgggaaaagggataaacaccacttccactgtcttcatgttg |
117 |
Q |
| |
|
||||||| |||||||||||||||| || ||||| | |||||||||| |||||| |||| |||||||||| |||||||||||| || ||||||| ||| |
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| T |
39472084 |
gttatcacggttgattagaagcttcgcaaactcgagagcagaaactatatgaccctcagccggaaaagggacaaacaccacttctgctttcttcatcttg |
39471985 |
T |
|
| Q |
118 |
gagcaca |
124 |
Q |
| |
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||||||| |
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|
| T |
39471984 |
gagcaca |
39471978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 236 - 281
Target Start/End: Original strand, 39464853 - 39464898
Alignment:
| Q |
236 |
agtatcataataaaagaaatctttgtgagtgatgtcatggctttgc |
281 |
Q |
| |
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||||||||||||| || ||||||||||||||||||||||||||||| |
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|
| T |
39464853 |
agtatcataataagaggaatctttgtgagtgatgtcatggctttgc |
39464898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 18 - 117
Target Start/End: Complemental strand, 39454687 - 39454588
Alignment:
| Q |
18 |
gttatcatggttgattagaagcttggcgaactctacggcagaaactagatgacctacagcgggaaaagggataaacaccacttccactgtcttcatgttg |
117 |
Q |
| |
|
||||||| ||||||||||||| || |||||||| | || ||||||| ||| || ||| | ||| ||||||||||||||||||| || ||||||||||| |
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| T |
39454687 |
gttatcacggttgattagaagtttcgcgaactcaagggtggaaactaaatggccaacaccaggagaagggataaacaccacttctgctttcttcatgttg |
39454588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 124
Target Start/End: Complemental strand, 39451048 - 39450942
Alignment:
| Q |
18 |
gttatcatggttgattagaagcttggcgaactctacggcagaaactagatgacctacagcgggaaaagggataaacaccacttccactgtcttcatgttg |
117 |
Q |
| |
|
||||||| | |||||||||||||| ||||| || | || ||||||||||| | ||| | ||||||||||||||||||||||| || ||||||| ||| |
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|
| T |
39451048 |
gttatcacgattgattagaagcttcgcgaattcaagggtggaaactagatggctcacaccaggaaaagggataaacaccacttctgctttcttcatcttg |
39450949 |
T |
|
| Q |
118 |
gagcaca |
124 |
Q |
| |
|
|||||| |
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|
| T |
39450948 |
aagcaca |
39450942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 101
Target Start/End: Complemental strand, 39480421 - 39480338
Alignment:
| Q |
18 |
gttatcatggttgattagaagcttggcgaactctacggcagaaactagatgacctacagcgggaaaagggataaacaccacttc |
101 |
Q |
| |
|
||||||| |||||||||||||||| ||||| || | || |||||||||||||| ||| | || ||||||||| ||||||||| |
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|
| T |
39480421 |
gttatcacggttgattagaagcttcgcgaattcaagggtggaaactagatgaccaacaccaggtgaagggataatcaccacttc |
39480338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 119
Target Start/End: Complemental strand, 39486507 - 39486406
Alignment:
| Q |
18 |
gttatcatggttgattagaagcttggcgaactctacggcagaaactagatgacctacagcgggaaaagggataaacaccacttccactgtcttcatgttg |
117 |
Q |
| |
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||||||| |||||||||||||||| || || || | || |||||||||||||| ||| | || ||||||||| ||||||||| || ||||||| ||| |
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|
| T |
39486507 |
gttatcacggttgattagaagctttgcaaattcaagggtggaaactagatgaccaacaccaggtgaagggataatcaccacttctgctttcttcatcttg |
39486408 |
T |
|
| Q |
118 |
ga |
119 |
Q |
| |
|
|| |
|
|
| T |
39486407 |
ga |
39486406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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