View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11867_low_11 (Length: 535)
Name: NF11867_low_11
Description: NF11867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11867_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 19 - 525
Target Start/End: Original strand, 8920852 - 8921368
Alignment:
| Q |
19 |
tgttatgttaatatttttctactttatttgtatttgaattctaaacttttacttcttacctcctttaatcttttagttcaaccaactaaattaatcatcc |
118 |
Q |
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| T |
8920852 |
tgttatgttaatatttttctactttatttgtatttgaattctaaacttttacttcttacctcctttaatcttttagttcaacgaactaaattaatcatcc |
8920951 |
T |
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| Q |
119 |
ctggaacaattgttttgttggcatgacattggaaaagaaaaagagtgagaaaattaattaagttttgcgttgctatatatgaattaat------------ |
206 |
Q |
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| T |
8920952 |
ctggaacaattgttttgttggcatgacattggaaaagaaaaagagtgagaaaattaattaaggcatgcgtagctatatatgaattaatcataatttagag |
8921051 |
T |
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| Q |
207 |
-aacaggttatttatgctgtgaccttatttatcaaggcgattgaggtaaaataggtgagacatgcattacaccttgctgaattaaaggtaatgtatccct |
305 |
Q |
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| T |
8921052 |
caacaggttatttatgctgtgaccttat----caaggcgattgaggtaaaataggtgagatatgcattacaccttgatgaattaaaggtaatgtatctct |
8921147 |
T |
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| Q |
306 |
aatgacaagtataattcaattcttaaacgaatgagatagtgatcacaagtactctaaaatctctcggttaactatttaattacctccactaattatctct |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8921148 |
aatgacaagtataattcaattcttaaacgaatgagatagtgatcacaagtactctaaaatctctcggttaactatttaattacctccactaattatctct |
8921247 |
T |
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| Q |
406 |
ctccacttcaagagacacaatctggcgcaggcactatagaaagcaacactgcatgtgagtaaagacctaaagttgaatgaatctaatccccgtc-aactc |
504 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
8921248 |
ctccacttcatgagacacaatctggcgcaggcactatagaaagcaacactgcatgtgagtaaagacctaaagttgaatgaatctaatccccgtcaaactc |
8921347 |
T |
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| Q |
505 |
tacatgccccatacacctttg |
525 |
Q |
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| T |
8921348 |
tgcatgccccatacacctttg |
8921368 |
T |
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