View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11867_low_17 (Length: 405)
Name: NF11867_low_17
Description: NF11867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11867_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 25 - 387
Target Start/End: Original strand, 6586429 - 6586779
Alignment:
| Q |
25 |
tttttggtataaaagagtgtcaaag-tccaaaaaagaggggg-aaactaagaagctaaacgcaaattttagacatgtatgttcgaaaaatatcattaaac |
122 |
Q |
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| T |
6586429 |
tttttggtataaaagagtgtcaaaggtccaaaaaagaggggggaaactaagaagctaaacgcaaattttaggcatgtatgttcgaaaaatatcatcaaac |
6586528 |
T |
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| Q |
123 |
ttaagactttaaaactcacaaagaggagacttcaaaacaaccagattctaagaaagaatctgcatgtaggctaaaatttgctggtcaattgtagtcttca |
222 |
Q |
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| T |
6586529 |
ttaagactttaaaactcacaaagaggagacttcaaaacaaccagattct-------------catataggctaaaatttgctggtcaattgtagtct-ca |
6586614 |
T |
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| Q |
223 |
cacgaaatgtaaataacataagtatgtcaatctcatcgaatgatctcttaaataagtcaaaccaaagaaagaatggtttcattaatcttattattgttaa |
322 |
Q |
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| T |
6586615 |
caccaaatgtaaataacatgagtatgtcaatctcatcgaatgatctcttaaataagtcaaaccaaagaaagaatggtttcattaatcttattattgttaa |
6586714 |
T |
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| Q |
323 |
caatcatatcctgatatccataaacacattcgagtaaatctcaacaatcaaatgagataaaccat |
387 |
Q |
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| T |
6586715 |
caattatatcctgatatccataaacacattcgagtaaatctcaacaatcaaatgagataaaccat |
6586779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 234 - 300
Target Start/End: Complemental strand, 24191173 - 24191107
Alignment:
| Q |
234 |
aataacataagtatgtcaatctcatcgaatgatctcttaaataagtcaaaccaaagaaagaatggtt |
300 |
Q |
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| T |
24191173 |
aataacttaagtatgtcaatctcatcgaaagatcccttgaatacgccaaaccaaagaaggaatggtt |
24191107 |
T |
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