View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11867_low_18 (Length: 404)
Name: NF11867_low_18
Description: NF11867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11867_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 300; Significance: 1e-168; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 10 - 387
Target Start/End: Complemental strand, 2907643 - 2907264
Alignment:
| Q |
10 |
atgagatgaattaaattgaatttaatttgctattaatcatcatgaatatgtatctttaccttatttgcaattgtgatactttgacattgatcaacaataa |
109 |
Q |
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| T |
2907643 |
atgacatgaattaaaatgaatttaatttgctattaatcatcatgaatatgtatctttaccttatttgcaattgtgatactttgacattgatcaacaataa |
2907544 |
T |
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| Q |
110 |
tatcacatgtcaaagtatattaacacttccttc--gaaaaaacgtaaatgaacaccgtcaaaaatgtcatcaataaacttcatatcagaatgtcaacatc |
207 |
Q |
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| T |
2907543 |
tatcacatgtcaaagtatattaacacttccttcgagaaaaaacgtaaatgaacaccatcaaaaatgtcatcaataaacttcatatcagaatgtcaacatc |
2907444 |
T |
|
| Q |
208 |
gtttcactaatcctatgannnnnnnaataatagattcatcgtcaaaaagtttactctcttgaatgtgcgacattgatgaaagataaaatacatcattaga |
307 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
2907443 |
gtttcactaatcctatgattattttaataatagattcatcgtcaaaaaatttattctcttgaatgtgcgacattgatttaagataaaatacatcattaga |
2907344 |
T |
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| Q |
308 |
acagagtgaaatgagaattattagctcaaagggaaaatgtgtatttgttgcattcatttaaaaaatcatatcggctaaat |
387 |
Q |
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| T |
2907343 |
acaggatgaaatgagaattattagctcaaagggaaaatacgtatttgttgcattcatttaaaaaattatatcggctaaat |
2907264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 26 - 134
Target Start/End: Complemental strand, 2814096 - 2813993
Alignment:
| Q |
26 |
tgaatttaatttgctattaatcatcatgaatatgtatctttaccttatttgcaattgtgatactttgacattgatcaacaataatatcacatgtcaaagt |
125 |
Q |
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| T |
2814096 |
tgaattaaatttgttattaatcatcatgaataggcatcatttc----tttgcaattgtgatagtttgacattgatc-acaataatttcacatgtcaaagt |
2814002 |
T |
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| Q |
126 |
atattaaca |
134 |
Q |
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| T |
2814001 |
aaattaaca |
2813993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 145; Significance: 3e-76; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 169 - 387
Target Start/End: Complemental strand, 13505794 - 13505574
Alignment:
| Q |
169 |
aaatgtcatcaataaacttcatatcagaatgtcaacatcgtttcactaatcctatgannnnnnn--aataatagattcatcgtcaaaaagtttactctct |
266 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||| ||||||||||||||||| |||||||||| |
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| T |
13505794 |
aaatgtcatcaataaacttcatatcagaatgtcagcatcgtttcactaatcctttgatttttttttaataacagattcatcgtcaaaaattttactctct |
13505695 |
T |
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| Q |
267 |
tgaatgtgcgacattgatgaaagataaaatacatcattagaacagagtgaaatgagaattattagctcaaagggaaaatgtgtatttgttgcattcattt |
366 |
Q |
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||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
13505694 |
tgaatgtgcgacattgatgaaagataaaatacatcattaaaaaagggtgaaatgagaattattagctcaaagggaaaataaatatttgttgcattcattt |
13505595 |
T |
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| Q |
367 |
aaaaaatcatatcggctaaat |
387 |
Q |
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| T |
13505594 |
aaaaaatcatatctgctaaat |
13505574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 239 - 372
Target Start/End: Original strand, 40798474 - 40798606
Alignment:
| Q |
239 |
agattcatcgtcaaaaagtttactctcttgaatgtgcgacattgatgaaagataaaatacatcattagaacagagtgaaatgagaattattagctcaaag |
338 |
Q |
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||||||||| || |||| ||||| |||||| |||||||||||||||| ||||||| ||| |||| ||| | |||||| |||||||||||||||||| |
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| T |
40798474 |
agattcatcctcgaaaaatttacgctcttgggtgtgcgacattgatgacggataaaacacaacatttgaaaatggtgaaaagagaattattagctcaaa- |
40798572 |
T |
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| Q |
339 |
ggaaaatgtgtatttgttgcattcatttaaaaaa |
372 |
Q |
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| T |
40798573 |
gaaaaataggtatctgttgcattcatttaaaaaa |
40798606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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