View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11867_low_20 (Length: 394)
Name: NF11867_low_20
Description: NF11867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11867_low_20 |
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Alignment Details
Target: chr6 (Bit Score: 294; Significance: 1e-165; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 8 - 333
Target Start/End: Complemental strand, 21117287 - 21116962
Alignment:
| Q |
8 |
caaaggatttggggattgaacccatcaagaagtggtttgtttccattttaacaaattaatattggttcctcaaatcaatactagtattgattgctataat |
107 |
Q |
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| T |
21117287 |
caaaggatttggggattgaacccatcaagaagtggtttgtttccattttaacaaattaatatttgttcctcgaatcaatactagtattgattgctataat |
21117188 |
T |
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| Q |
108 |
caaaatgtggtcaggcatggacactggactcgacactattagtgacattagtattggttgctcaaatcacaaatcacaaattaaccaatcaagtatctat |
207 |
Q |
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|||||||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21117187 |
caaaatgtggtcagacatggacactggactcgacactatcaatgacattagtattggttgctcaaatcacaaatcacaaattaaccaatcaagtatctat |
21117088 |
T |
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| Q |
208 |
atatacataaaatgctaaatcgttaaatctatttattagcaaggtaatggaatgaatccatgttcacattctagcattctccgttgattaagcactcaat |
307 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21117087 |
atatacataaaatgcgaaatcgttaaatctatttattagcaaggtaatggaatgaatccatgttcacattctagcattctccgttgattaagcactcaat |
21116988 |
T |
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| Q |
308 |
cacgtcgataaattctcgattcacta |
333 |
Q |
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| T |
21116987 |
catgtcgataaattctcgactcacta |
21116962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 145
Target Start/End: Complemental strand, 21137088 - 21136990
Alignment:
| Q |
47 |
tttccattttaacaaattaatattggttcctcaaatcaatactagtattgattgctataatcaaaatgtggtcaggcatggacactggactcgacacta |
145 |
Q |
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| T |
21137088 |
tttcctttttaacaaactagtaatggttgctctaatcagtagtaatattgattgctcaaataaaaaaatggtcagacatggacattggactcgacacta |
21136990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 347 - 378
Target Start/End: Complemental strand, 21116962 - 21116931
Alignment:
| Q |
347 |
atcaagtgtctccaatcttcacattgcattct |
378 |
Q |
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| T |
21116962 |
atcaagtgtctccaatcttcacattgcattct |
21116931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 344 - 378
Target Start/End: Complemental strand, 21116839 - 21116805
Alignment:
| Q |
344 |
acaatcaagtgtctccaatcttcacattgcattct |
378 |
Q |
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|||| |||||||||||||||||||||||||||||| |
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| T |
21116839 |
acaaacaagtgtctccaatcttcacattgcattct |
21116805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 344 - 378
Target Start/End: Complemental strand, 12920835 - 12920801
Alignment:
| Q |
344 |
acaatcaagtgtctccaatcttcacattgcattct |
378 |
Q |
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|||| |||||||||||||||||||||||||||||| |
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| T |
12920835 |
acaaacaagtgtctccaatcttcacattgcattct |
12920801 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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