View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11867_low_21 (Length: 391)

Name: NF11867_low_21
Description: NF11867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11867_low_21
NF11867_low_21
[»] chr2 (3 HSPs)
chr2 (1-373)||(16237019-16237401)
chr2 (208-373)||(32714168-32714333)
chr2 (134-359)||(160868-161091)
[»] chr7 (1 HSPs)
chr7 (1-373)||(28575043-28575425)
[»] chr3 (2 HSPs)
chr3 (1-373)||(20633235-20633617)
chr3 (3-254)||(48823268-48823529)
[»] chr1 (3 HSPs)
chr1 (134-373)||(38835872-38836111)
chr1 (1-135)||(38833333-38833467)
chr1 (1-67)||(18185400-18185466)
[»] chr6 (1 HSPs)
chr6 (1-370)||(18568452-18568836)
[»] chr5 (1 HSPs)
chr5 (1-67)||(39180666-39180732)


Alignment Details
Target: chr2 (Bit Score: 312; Significance: 1e-176; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 373
Target Start/End: Complemental strand, 16237401 - 16237019
Alignment:
Q  1 acatttaattctactgcagtgaaccccatacgttttgcacaccgaagaccttccaaaacttcccatagctctgcaataaaagcatcacacttccctaaaa 100  Q
    ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  16237401 acatttaattctactgcagtgaaccccatacgtttcgcacaccggagaccttccaaaactccccatagctctgcaataaaagcatcacacttccctaaaa 16237302  T
Q  101 atttagagaaccccgctaaccactcgccttgcgaa----------gtcctccacaccccgcgatactaccatccttacaatctccgtcagtattgatctt 190  Q
    |||| ||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  16237301 atttggagaaccccgctaaccactcgccttgcgaacctcggataagtcctccacaccccgcgatactaccatccttacacgctccgtcagtattgatctt 16237202  T
Q  191 gacccacccaatcggtggttccttccatctcacttcctccaaatgtctcagctgagatgtcacaataacagactttgctattgcattacgataatcatta 290  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  16237201 gacccacccaatcggtggttccttccatcccacttcctccaaatgtctcagctgagatgtcacaataacagactttgctattgcattatgataatcatta 16237102  T
Q  291 acataactcataataatatttttagcatgtaaaggtctttggtagttatcattatgagttttcttgtttctccaattccatat 373  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  16237101 acataactcataataatatttttagcatgtaaaggtctttggtagttatcattatgagtttccttgtttctccaattccatat 16237019  T

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Target: chr2; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 208 - 373
Target Start/End: Original strand, 32714168 - 32714333
Alignment:
Q  208 gttccttccatctcacttcctccaaatgtctcagctgagatgtcacaataacagactttgctattgcattacgataatcattaacataactcataataat 307  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  32714168 gttccttccatcccacttcctccaaatgtctcagctgagatgtcacaataacagactttgctattgcattatgataatcattaacataactcataataat 32714267  T
Q  308 atttttagcatgtaaaggtctttggtagttatcattatgagttttcttgtttctccaattccatat 373  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  32714268 atttttagcatgtaaaggtctttggtagttatcattatgagtttccttgtttctccaattccatat 32714333  T

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Target: chr2; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 134 - 359
Target Start/End: Complemental strand, 161091 - 160868
Alignment:
Q  134 aagtcctccacaccccgcgatactaccatccttacaatctccgtcagtattgatcttgacccacccaatcggtggttccttccatctcacttcctccaaa 233  Q
    ||||||||||||||||||||||||| |||||||| || |  |||||||||| |||||||||||||| |||||  || ||||| ||| ||| | ||| |||    
T  161091 aagtcctccacaccccgcgatactatcatccttataaacatcgtcagtattaatcttgacccaccc-atcggcagtcccttcaatcccaccttctctaaa 160993  T
Q  234 tgtctcagctgagatgtcacaataacagactttgctattgcattacgataatcattaacataactcataataatatttttagcatgtaaaggtctttggt 333  Q
     || || ||||||||||    ||| ||||| ||| | ||||| |  ||||||||  |||| |||||| ||||||| ||||||||||||||||||||||      
T  160992 cgtgtcggctgagatgtagttatagcagaccttgttgttgcaatgtgataatcaccaacacaactcaaaataata-ttttagcatgtaaaggtctttgaa 160894  T
Q  334 agttatcattatgagttttcttgttt 359  Q
    | |||||||||||||||| |||||||    
T  160893 aattatcattatgagtttccttgttt 160868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 373
Target Start/End: Original strand, 28575043 - 28575425
Alignment:
Q  1 acatttaattctactgcagtgaaccccatacgttttgcacaccgaagaccttccaaaacttcccatagctctgcaataaaagcatcacacttccctaaaa 100  Q
    ||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  28575043 acatttaattctactgcagtgaaccccatacgtttcgcacatcggagaccttccaaaactccccatagctctgcaataaaagcatcacacttccctaaaa 28575142  T
Q  101 atttagagaaccccgctaaccactcgccttgcgaa----------gtcctccacaccccgcgatactaccatccttacaatctccgtcagtattgatctt 190  Q
    |||| ||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  28575143 atttggagaaccccgctaaccactcgccttgcgaacctcggataagtcctccacaccccgcgatactaccatccttacacgctccgtcagtattgatctt 28575242  T
Q  191 gacccacccaatcggtggttccttccatctcacttcctccaaatgtctcagctgagatgtcacaataacagactttgctattgcattacgataatcatta 290  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  28575243 gacccacccaatcggtggttccttccatcccacttcctccaaatgtctcagctgagatgtcacaataacagactttgctattgcattatgataatcatta 28575342  T
Q  291 acataactcataataatatttttagcatgtaaaggtctttggtagttatcattatgagttttcttgtttctccaattccatat 373  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  28575343 acataactcataataatatttttagcatgtaaaggtctttggtagttatcattatgagtttccttgtttctccaattccatat 28575425  T

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Target: chr3 (Bit Score: 280; Significance: 1e-157; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 373
Target Start/End: Original strand, 20633235 - 20633617
Alignment:
Q  1 acatttaattctactgcagtgaaccccatacgttttgcacaccgaagaccttccaaaacttcccatagctctgcaataaaagcatcacacttccctaaaa 100  Q
    ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  20633235 acatttaattctactgcagtgaaccccatacgtttcgcacaccggagaccttccaaaactccccatagctctgcaataaaagcatcacacttccctaaaa 20633334  T
Q  101 atttagagaaccccgctaaccactcgccttgcgaa----------gtcctccacaccccgcgatactaccatccttacaatctccgtcagtattgatctt 190  Q
    |||| ||||||||||||||||||||||||| ||||          ||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  20633335 atttggagaaccccgctaaccactcgccttccgaacctctgataagtcctccacaccccgcgatactaccatccttacaagctccgtcagtattgatctt 20633434  T
Q  191 gacccacccaatcggtggttccttccatctcacttcctccaaatgtctcagctgagatgtcacaataacagactttgctattgcattacgataatcatta 290  Q
    |||||||| ||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||||||| | |||||||| |||||  |||||||||||    
T  20633435 gacccacctaatcgctggttccttccatcccacttcctccaaatgtctcggctgagatgtcacaataacaaattttgctatagcattgtgataatcatta 20633534  T
Q  291 acataactcataataatatttttagcatgtaaaggtctttggtagttatcattatgagttttcttgtttctccaattccatat 373  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  20633535 acataaatcataataatatttttagcatgtaaaggtctttggtagttatcattatgagtttccttgtttctccaattccatat 20633617  T

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Target: chr3; HSP #2
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 3 - 254
Target Start/End: Original strand, 48823268 - 48823529
Alignment:
Q  3 atttaattctactgcagtgaaccccatacgttttgcacaccgaagaccttccaaaacttcccatagctctgcaataaaagcatcacacttccctaaaaat 102  Q
    ||||||||||||||||||||||||  |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||    
T  48823268 atttaattctactgcagtgaaccctgtacgttttgcacaccggagaccttccaaaactccccatagctctgcaataaaagcatcactcttccctaaaaat 48823367  T
Q  103 ttagagaaccccgctaaccactcgccttgcg----------aagtcctccacaccccgcgatactaccatccttacaatctccgtcagtattgatcttga 192  Q
    || ||||||||||||||||||||||||| ||          ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  48823368 ttggagaaccccgctaaccactcgccttccgaacctctgataagtcctccacaccccgcgatactaccatccttacaagctccgtcagtattgatcttga 48823467  T
Q  193 cccacccaatcggtggttccttccatctcacttcctccaaatgtctcagctgagatgtcaca 254  Q
    |||| ||||||| |||||||||||||| ||||||||| ||||||||  ||||||||||||||    
T  48823468 cccatccaatcgctggttccttccatcccacttcctctaaatgtcttggctgagatgtcaca 48823529  T

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Target: chr1 (Bit Score: 180; Significance: 4e-97; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 134 - 373
Target Start/End: Original strand, 38835872 - 38836111
Alignment:
Q  134 aagtcctccacaccccgcgatactaccatccttacaatctccgtcagtattgatcttgacccacccaatcggtggttccttccatctcacttcctccaaa 233  Q
    ||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||| ||||| ||||||||||||||| |||||||||||||    
T  38835872 aagtcctccacaccccgcgatactaccatccttacaagcttcgttagtattgatcttgacccacgcaatcagtggttccttccatcccacttcctccaaa 38835971  T
Q  234 tgtctcagctgagatgtcacaataacagactttgctattgcattacgataatcattaacataactcataataatatttttagcatgtaaaggtctttggt 333  Q
    |||||| |||||||| ||||||||||||||||||||| | ||||  |||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  38835972 tgtctcggctgagatatcacaataacagactttgctaatacattgtgataataattaacataactcataataatatttttagcatgtaaaggtctttggt 38836071  T
Q  334 agttatcattatgagttttcttgtttctccaattccatat 373  Q
    |||| ||||||||||||| |||||||||||||||||||||    
T  38836072 agttgtcattatgagtttccttgtttctccaattccatat 38836111  T

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Target: chr1; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 38833333 - 38833467
Alignment:
Q  1 acatttaattctactgcagtgaaccccatacgttttgcacaccgaagaccttccaaaacttcccatagctctgcaataaaagcatcacacttccctaaaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  38833333 acatttaattctactgcagtgaaccccatacgttttgcacaccggagaccttccaaaactccccatagctctgcaataaaagcatcacacttccctaaaa 38833432  T
Q  101 atttagagaaccccgctaaccactcgccttgcgaa 135  Q
    |||| ||||||||||||||||||||||||| ||||    
T  38833433 atttggagaaccccgctaaccactcgccttccgaa 38833467  T

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Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 18185466 - 18185400
Alignment:
Q  1 acatttaattctactgcagtgaaccccatacgttttgcacaccgaagaccttccaaaacttcccata 67  Q
    ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||    
T  18185466 acatttaattctactgcagtgaaccccatacgtttcgcacaccggagaccttccaaaactccccata 18185400  T

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Target: chr6 (Bit Score: 140; Significance: 3e-73; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 1 - 370
Target Start/End: Complemental strand, 18568836 - 18568452
Alignment:
Q  1 acatttaattctactgcagtgaaccccatacgttttgcacaccgaagaccttccaaaacttcccatagctctgcaataaaagcatcacacttccctaaaa 100  Q
    |||||||| | ||||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||||| |||| ||||||   ||||||||| ||||    
T  18568836 acatttaagtatactgcagtgaaccccatatgttttgcacatcga-gaccttccaaaacttcccatagctccgcaacaaaagcgctacacttccccaaaa 18568738  T
Q  101 atttagagaaccccgctaaccactcgccttgcgaa----------gtcctccacac-cccgcgatactaccatccttacaatctccgtcagtattgatct 189  Q
    ||||  |||||||| ||||||| ||||||| | ||          | | ||||| | ||||| ||| |||||||||||||| |  ||| |||||||||||    
T  18568737 atttgaagaaccccactaaccattcgcctttcaaacctctaataagccatccacgctcccgcaatattaccatccttacaagcatcgttagtattgatct 18568638  T
Q  190 tgacccacccaatcggtggttccttccatctcacttcctccaaatgtctcagctgagatgtcacaa-------taacagactttgctattgcattacgat 282  Q
    ||||||||||||| |||||| ||||||||| ||||||| ||||||||||| |||||||||||||||       ||||| |||||| | |||||||  |||    
T  18568637 tgacccacccaattggtggtaccttccatcccacttccgccaaatgtctcggctgagatgtcacaactcacaataacaaactttgttgttgcattgtgat 18568538  T
Q  283 aatcattaacataactcataataatatttttagcatgtaaaggtctttggtagttatcattatgagttttcttgtttctccaattcca 370  Q
    |||| |||||||||||||  |||||||||||||||||||||||| ||||||| |||| ||||||||||| ||||||||||||||||||    
T  18568537 aatcgttaacataactca--ataatatttttagcatgtaaaggtgtttggtaattattattatgagtttccttgtttctccaattcca 18568452  T

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Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 39180732 - 39180666
Alignment:
Q  1 acatttaattctactgcagtgaaccccatacgttttgcacaccgaagaccttccaaaacttcccata 67  Q
    ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||    
T  39180732 acatttaattctactgcagtgaaccccatacgtttcgcacaccggagaccttccaaaactccccata 39180666  T

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