View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11867_low_22 (Length: 381)
Name: NF11867_low_22
Description: NF11867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11867_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 339; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 17 - 359
Target Start/End: Original strand, 46167086 - 46167428
Alignment:
| Q |
17 |
cagagagatggcttgatgaaaatggaaattttcaaagagagagcccttttaagttcacagccttccaggtatgaacaacttaattaggtgcttgtcgtcg |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
46167086 |
cagagagatggcttgatgaaaatggaaattttcaaagagagagcccttttaagttcacagccttccaggtatgaacaacttaattaggcgcttgtcgtcg |
46167185 |
T |
|
| Q |
117 |
cataatcgcttatcatatacgtgcttctgtataagcaatttctaccactagataaaatcaaattgtattcatataagctatatcatattttcataagctc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46167186 |
cataatcgcttatcatatacgtgcttctgtataagcaatttctaccactagataaaatcaaattgtattcatataagctatatcatattttcataagctc |
46167285 |
T |
|
| Q |
217 |
tttcaaacagtctcacaatatatctctatgtaactttactatcaatgtgatttcctaacacaggcgggtccaagaatttgccttggcaaggagtttgcat |
316 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46167286 |
tttcaaacagtctcacaatatatctctatgtaactttactatcaatgtgatttcctaacacaggcgggtccaagaatttgccttggcaaggagtttgcat |
46167385 |
T |
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| Q |
317 |
acagacagatgaagatattttctgcagttctgttaggtagcca |
359 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46167386 |
acagacagatgaagatattttctgcagttctgttaggtagcca |
46167428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 241 - 356
Target Start/End: Original strand, 46160794 - 46160909
Alignment:
| Q |
241 |
tctatgtaactttactatcaatgtgatttcctaacacaggcgggtccaagaatttgccttggcaaggagtttgcatacagacagatgaagatattttctg |
340 |
Q |
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|||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |
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| T |
46160794 |
tctatgtaactttactgtcaatgtgacatcctaacacaggcgggtccaagaatttgtcttggcaaggagtttgtatacagacagatgaagatattttctg |
46160893 |
T |
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| Q |
341 |
cagttctgttaggtag |
356 |
Q |
| |
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|||||||||||||||| |
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| T |
46160894 |
cagttctgttaggtag |
46160909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 17 - 136
Target Start/End: Original strand, 46160224 - 46160340
Alignment:
| Q |
17 |
cagagagatggcttgatgaaaatggaaattttcaaagagagagcccttttaagttcacagccttccaggtatgaacaacttaattaggtgcttgtcgtcg |
116 |
Q |
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|||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||| || | |
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| T |
46160224 |
cagagagatggcttgatgaaaatggaaattttcagagagaaagcccttttaagttcacagcctttcaggtatgaacaacttaattaggcgctt---gtag |
46160320 |
T |
|
| Q |
117 |
cataatcgcttatcatatac |
136 |
Q |
| |
|
|||||||||||||||||||| |
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| T |
46160321 |
cataatcgcttatcatatac |
46160340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 281 - 359
Target Start/End: Original strand, 46182598 - 46182676
Alignment:
| Q |
281 |
cgggtccaagaatttgccttggcaaggagtttgcatacagacagatgaagatattttctgcagttctgttaggtagcca |
359 |
Q |
| |
|
||||||||||| |||||||||||||| |||||||||||||||| || |||||||||||||||||||| ||||||||||| |
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|
| T |
46182598 |
cgggtccaagagtttgccttggcaagaagtttgcatacagacatataaagatattttctgcagttctattaggtagcca |
46182676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 160
Target Start/End: Original strand, 26516212 - 26516256
Alignment:
| Q |
116 |
gcataatcgcttatcatatacgtgcttctgtataagcaatttcta |
160 |
Q |
| |
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|||||| ||||||||||||| |||||| ||||||||| ||||||| |
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|
| T |
26516212 |
gcataagcgcttatcatataagtgcttatgtataagctatttcta |
26516256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 202 - 234
Target Start/End: Complemental strand, 28283593 - 28283561
Alignment:
| Q |
202 |
tattttcataagctctttcaaacagtctcacaa |
234 |
Q |
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|||||||||||| |||||||||||||||||||| |
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| T |
28283593 |
tattttcataagttctttcaaacagtctcacaa |
28283561 |
T |
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