View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11867_low_24 (Length: 341)
Name: NF11867_low_24
Description: NF11867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11867_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 310; Significance: 1e-174; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 18 - 335
Target Start/End: Original strand, 41108130 - 41108447
Alignment:
| Q |
18 |
acttgaatgcagtgataaaagagagtttacgtttacaccctccagctccaatgttgcttcctaggaaagcaagggtagatgtggaaatagcaggttacac |
117 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41108130 |
acttgaatgcagtgataaaagagagtttacgtttacaccctccagctccaatgttacttcctaggaaagcaagggtagatgtggaaatagcaggttacac |
41108229 |
T |
|
| Q |
118 |
aattccaaaaggtgcacaagttctgatcaatgaatgggctattggtagaacagacatatgggatgatgctcatttgttttcaccagaaagatttttgggt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41108230 |
aattccaaaaggtgcacaagttctgatcaatgaatgggctattggtagaacagacatatgggatgatgctcatttgttttcaccagaaagatttttgggt |
41108329 |
T |
|
| Q |
218 |
tctgaaattgatgtcaaaggtcgacattttaagcttacaccgttcggcagtggaagacgtatatgtcctggctcaccacttgctgttaggatgttgcatt |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41108330 |
tctgaaattgatgtcaaaggtcgacattttaagcttacaccgttcggtagtggaagacgtatatgtcctggctcaccacttgctgttaggatgttgcatt |
41108429 |
T |
|
| Q |
318 |
tgatgttgggatcattga |
335 |
Q |
| |
|
|||||||||||||||||| |
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| T |
41108430 |
tgatgttgggatcattga |
41108447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 18 - 335
Target Start/End: Original strand, 41129254 - 41129571
Alignment:
| Q |
18 |
acttgaatgcagtgataaaagagagtttacgtttacaccctccagctccaatgttgcttcctaggaaagcaagggtagatgtggaaatagcaggttacac |
117 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41129254 |
acttgaatgcagtgataaaagagagtttacgtttacaccctccagctccaatgttacttcctaggaaagcaagggtagatgtggaaatagcaggttacac |
41129353 |
T |
|
| Q |
118 |
aattccaaaaggtgcacaagttctgatcaatgaatgggctattggtagaacagacatatgggatgatgctcatttgttttcaccagaaagatttttgggt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41129354 |
aattccaaaaggtgcacaagttctgatcaatgaatgggctattggtagaacagacatatgggatgatgctcatttgttttcaccagaaagatttttgggt |
41129453 |
T |
|
| Q |
218 |
tctgaaattgatgtcaaaggtcgacattttaagcttacaccgttcggcagtggaagacgtatatgtcctggctcaccacttgctgttaggatgttgcatt |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
41129454 |
tctgaaattgatgtcaaaggtcgacattttaagcttacaccgttcggcagtggaagacgtatatgtcctggctcaccacttgctgttaggatgtttcatt |
41129553 |
T |
|
| Q |
318 |
tgatgttgggatcattga |
335 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
41129554 |
tgatgttgggatcattga |
41129571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 18 - 335
Target Start/End: Complemental strand, 41143429 - 41143112
Alignment:
| Q |
18 |
acttgaatgcagtgataaaagagagtttacgtttacaccctccagctccaatgttgcttcctaggaaagcaagggtagatgtggaaatagcaggttacac |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41143429 |
acttgaatgcagtgataaaagagagtttacgtttacaccctccagctccaatgttacttcctaggaaagcaagggtagatgtggaaatagcaggttacac |
41143330 |
T |
|
| Q |
118 |
aattccaaaaggtgcacaagttctgatcaatgaatgggctattggtagaacagacatatgggatgatgctcatttgttttcaccagaaagatttttgggt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41143329 |
aattccaaaaggtgcacaagttctgatcaatgaatgggctattggtagaacagacatatgggatgatgctcatttgttttcaccagaaagatttttgggt |
41143230 |
T |
|
| Q |
218 |
tctgaaattgatgtcaaaggtcgacattttaagcttacaccgttcggcagtggaagacgtatatgtcctggctcaccacttgctgttaggatgttgcatt |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41143229 |
tctgaaattgatgtcaaaggtcgacattttaagcttacaccgttcggaagtggaagacgtatatgtcctggctcaccacttgctgttaggatgttgcatt |
41143130 |
T |
|
| Q |
318 |
tgatgttgggatcattga |
335 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
41143129 |
tgatgttgggatcattga |
41143112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 18 - 335
Target Start/End: Complemental strand, 41119287 - 41118970
Alignment:
| Q |
18 |
acttgaatgcagtgataaaagagagtttacgtttacaccctccagctccaatgttgcttcctaggaaagcaagggtagatgtggaaatagcaggttacac |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41119287 |
acttgaatgcagtgataaaagagagtttacgtttacaccctccagctccaatgttacttcctaggaaagcaagggtagatgtggaaatagcaggttacac |
41119188 |
T |
|
| Q |
118 |
aattccaaaaggtgcacaagttctgatcaatgaatgggctattggtagaacagacatatgggatgatgctcatttgttttcaccagaaagatttttgggt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
41119187 |
aattccaaaaggtgcacaagttctgatcaatgaatgggctattggtagaacagacatatgggatgatgcacatttgttttcaccagaaagatttttgggt |
41119088 |
T |
|
| Q |
218 |
tctgaaattgatgtcaaaggtcgacattttaagcttacaccgttcggcagtggaagacgtatatgtcctggctcaccacttgctgttaggatgttgcatt |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
41119087 |
tctgaaattgatgtcaaaggtcgacattttaagcttacaccgttcggtagtggaagacgtatatgtcctggctcaccacttgctgttaggatgttacatt |
41118988 |
T |
|
| Q |
318 |
tgatgttgggatcattga |
335 |
Q |
| |
|
|||||||||||||||||| |
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| T |
41118987 |
tgatgttgggatcattga |
41118970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 166; Significance: 8e-89; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 26 - 331
Target Start/End: Original strand, 41035732 - 41036037
Alignment:
| Q |
26 |
gcagtgataaaagagagtttacgtttacaccctccagctccaatgttgcttcctaggaaagcaagggtagatgtggaaatagcaggttacacaattccaa |
125 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||| | ||||| || | ||||| || ||||||||| ||||||||| ||||| ||||||| |
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|
| T |
41035732 |
gcagtgataaaagagagtttacgcttacaccctccagctccacttttgctcccacgtaaagctagagtagatgtgcaaatagcagtgtacactattccaa |
41035831 |
T |
|
| Q |
126 |
aaggtgcacaagttctgatcaatgaatgggctattggtagaacagacatatgggatgatgctcatttgttttcaccagaaagatttttgggttctgaaat |
225 |
Q |
| |
|
| ||||||||| ||| ||| |||||||||||||||||||||||| ||||||||||||||||| |||| |||||||||||||||||||| || |||||||| |
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|
| T |
41035832 |
agggtgcacaaattcggataaatgaatgggctattggtagaacaaacatatgggatgatgctgatttattttcaccagaaagatttttaggatctgaaat |
41035931 |
T |
|
| Q |
226 |
tgatgtcaaaggtcgacattttaagcttacaccgttcggcagtggaagacgtatatgtcctggctcaccacttgctgttaggatgttgcatttgatgttg |
325 |
Q |
| |
|
|||| ||||||||||||| ||||| |||||||| || || ||||| ||||||||||||||||| |||||| | ||| |||||||| |||||| ||||||| |
|
|
| T |
41035932 |
tgatatcaaaggtcgacactttaatcttacaccatttggtagtgggagacgtatatgtcctggttcaccattggctattaggatgatgcattcgatgttg |
41036031 |
T |
|
| Q |
326 |
ggatca |
331 |
Q |
| |
|
|||||| |
|
|
| T |
41036032 |
ggatca |
41036037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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