View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11867_low_27 (Length: 333)
Name: NF11867_low_27
Description: NF11867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11867_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 13 - 260
Target Start/End: Original strand, 41697820 - 41698067
Alignment:
| Q |
13 |
gaaagaatacttataaagcaattttatttgaattcgagaacaaaatatgaatatgaatacaaacgcttacgtgtgaccaacaagaacaacatttgcatcc |
112 |
Q |
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| T |
41697820 |
gaaagaatacttataaagcaattttatttgaattcgagaacaaaatatgaatatgaatacaaacgcttacgtgtgaccaacaagaacaacatttgcatcc |
41697919 |
T |
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| Q |
113 |
tcattgtgtgctgcaattgccatagattcatcaacaacaagaactgtagaacactcgtttgaggaatcatcttctaaacttttcaatccttctttcggaa |
212 |
Q |
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| T |
41697920 |
tcattgtgtgctgcaattgccatagattcatcaacaacaagaactgtagaacactcatttgaggaatcatcttctaaacttttcaatccttctttcggaa |
41698019 |
T |
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| Q |
213 |
caaatgcaagaatttccttcttgaaattaataagtaaaatctgctcac |
260 |
Q |
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| T |
41698020 |
caaatgcaagaatttccttcttgaaattaataagtaaaatctgctcac |
41698067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 286 - 321
Target Start/End: Original strand, 41698097 - 41698132
Alignment:
| Q |
286 |
ttactattaattatacatacatgcaataacattggt |
321 |
Q |
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| T |
41698097 |
ttactattaattatacatacatgcaataacattggt |
41698132 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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