View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11867_low_28 (Length: 329)
Name: NF11867_low_28
Description: NF11867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11867_low_28 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 12 - 312
Target Start/End: Original strand, 9574570 - 9574876
Alignment:
| Q |
12 |
agagagatataggttgaggctaaactcaatagtgccatgaat------aataatacttttcaaaaagacatgtgttgtgtttttgggttatgtataaaca |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |||||||||||| |
|
|
| T |
9574570 |
agagagatataggttgaggctaaactcaatagtgccatgaatgtaatgaataatacttttcataaagacatgtgttgtgtttttggggtatgtataaaca |
9574669 |
T |
|
| Q |
106 |
agcacacttcttgaacttcagaagagatatttgatcttgtaaatgtcaggtattgcaaagatcaagcgaggttatgatattatgttggatcttcatagga |
205 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||| | |||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
9574670 |
agcacacttcttgaacttcataagagatatttgatcttgtaaatgtcaggtactacaatgctcaagcgaggctatgatattatgttggatcttcataggg |
9574769 |
T |
|
| Q |
206 |
gtttcttgaagaaccactgagttttgcctttgtattcacatgtgtgggtgatgacttgccagcagacatacatgtgtgctcaataacttcctctgcatat |
305 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9574770 |
gtttcatgaagaaccactgagttttgcctttgtattcacatgtatgggtgatgacttgccagtagacatacatgtgtgctcaataacttcctctgcatat |
9574869 |
T |
|
| Q |
306 |
ttatttt |
312 |
Q |
| |
|
||||||| |
|
|
| T |
9574870 |
ttatttt |
9574876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 151
Target Start/End: Complemental strand, 25745419 - 25745339
Alignment:
| Q |
71 |
agacatgtgttgtgtttttgggttatgtataaacaagcacacttcttgaacttcagaagagatatttgatcttgtaaatgt |
151 |
Q |
| |
|
|||||| |||| ||||||||| | ||| ||||||||||| || | ||||||| || ||||||||| || |||||||||||| |
|
|
| T |
25745419 |
agacatatgttatgtttttggatcatgcataaacaagcatacatgttgaactacataagagatatctggtcttgtaaatgt |
25745339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University