View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11867_low_30 (Length: 315)
Name: NF11867_low_30
Description: NF11867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11867_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 11778686 - 11778390
Alignment:
| Q |
1 |
agccaataaccagattttgatctgatggcaggttgtcctctataatcaacagcaccatctacaagatcatctaattgagcttctagcaaaacttcattgt |
100 |
Q |
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| T |
11778686 |
agccaataaccagatttggatctgatggcaggttgtcctctataatcaacagcaccatctacaagatcagctaatttagcatctaacaaaacatcattgt |
11778587 |
T |
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| Q |
101 |
attcctccattgaacgaaattttcttcttcaataaaaatgagttgtttgcgtttatgtattcattacttcttggcccataaaagttaccacacaactaac |
200 |
Q |
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| T |
11778586 |
attcttccatcgaaccaaattttcttcttcaatcaaaatgagttgtttgcgtttatgtattcattacttcttggtccataaaagtcaccactcaactaac |
11778487 |
T |
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| Q |
201 |
ttcttgatctgtccttgttaggatggttttgcttggttaggtgatggatgtactgtgtttgtatgatgtttcttttttgtgttccgcctatatacga |
297 |
Q |
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| T |
11778486 |
ttcttgatatgtccttgttaggatggttttgcttggttaggtgatggatgtaccgtgtttgtatgatgtttcttttctgtgttccacttatatacga |
11778390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 2 - 173
Target Start/End: Complemental strand, 11797256 - 11797084
Alignment:
| Q |
2 |
gccaataaccagattttgatctgatggcaggttgtcctctataatcaacagcaccatctacaagatcatctaattgagcttctagcaaaacttcattgta |
101 |
Q |
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|||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |||||||| |
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| T |
11797256 |
gccaataaccagatttggatctgattgcaggttgccctctataatcaacagcaccatctacaagatcagttaattgagcttctaacaaaacgtcattgta |
11797157 |
T |
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| Q |
102 |
ttcctccattgaacgaaattttcttcttcaataaaaatgag-ttgtttgcgtttatgtattcattacttcttg |
173 |
Q |
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| T |
11797156 |
ttcctccattgaaccaaattttcttcttcaatgaaaatgagtttttttgcgtttatgtattcattacttcttg |
11797084 |
T |
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