View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11867_low_31 (Length: 301)

Name: NF11867_low_31
Description: NF11867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11867_low_31
NF11867_low_31
[»] chr1 (1 HSPs)
chr1 (1-301)||(5131299-5131598)
[»] chr7 (2 HSPs)
chr7 (1-37)||(35780345-35780381)
chr7 (1-37)||(48361390-48361426)
[»] chr5 (8 HSPs)
chr5 (1-37)||(8536033-8536069)
chr5 (1-36)||(8637405-8637440)
chr5 (1-33)||(1599842-1599874)
chr5 (1-37)||(2844598-2844634)
chr5 (1-37)||(2856425-2856461)
chr5 (1-37)||(2904541-2904577)
chr5 (1-37)||(8529469-8529505)
chr5 (180-232)||(8637669-8637721)
[»] chr4 (1 HSPs)
chr4 (1-37)||(9443630-9443666)


Alignment Details
Target: chr1 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 301
Target Start/End: Original strand, 5131299 - 5131598
Alignment:
Q  1 ttatattcattagttttagattggaaaccaaaaccagaaaatcctaccatagttacacgacctgttttcaacctgagaggagttgtagtagcttgcacga 100  Q
    |||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |||||||||    
T  5131299 ttatattcattagtttta-attggaaaccaaaactagaaaatcctaccataattacacgacctgtgttcaacctgagaggagttgtagtaacttgcacga 5131397  T
Q  101 attcacaacttgaaaactatcatgatctggattgcaagcaatataaaccctttctttacccaccattactttctgattctttttctccaaagctaatctc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  5131398 attcacaacttgaaaactatcatgatctggattgcaagcaatataaaccctttctttacccaccattactttcttattctttttctccaaagctaatctc 5131497  T
Q  201 acagcccgatgagggcgtttggatttattctcaatctcgtctcttttctccctgatcgatttagcatcatgaagaggaagcttaaatataggctccagct 300  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  5131498 acagcccgaagagggtgtttggatttattctcaatctcgtctcttttctccctgatcgatttagcatcacgaagaggaagcttaaatataggctccagct 5131597  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 35780345 - 35780381
Alignment:
Q  1 ttatattcattagttttagattggaaaccaaaaccag 37  Q
    ||||||||||||||||||| |||||||||||||||||    
T  35780345 ttatattcattagttttaggttggaaaccaaaaccag 35780381  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 48361426 - 48361390
Alignment:
Q  1 ttatattcattagttttagattggaaaccaaaaccag 37  Q
    ||||||||||||||||||| |||||||||||||||||    
T  48361426 ttatattcattagttttaggttggaaaccaaaaccag 48361390  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 8536033 - 8536069
Alignment:
Q  1 ttatattcattagttttagattggaaaccaaaaccag 37  Q
    ||||||||||||||||||| |||||||||||||||||    
T  8536033 ttatattcattagttttaggttggaaaccaaaaccag 8536069  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 8637405 - 8637440
Alignment:
Q  1 ttatattcattagttttagattggaaaccaaaacca 36  Q
    ||||||||||||||||||| ||||||||||||||||    
T  8637405 ttatattcattagttttaggttggaaaccaaaacca 8637440  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 1599874 - 1599842
Alignment:
Q  1 ttatattcattagttttagattggaaaccaaaa 33  Q
    ||||||||||||||||||| |||||||||||||    
T  1599874 ttatattcattagttttaggttggaaaccaaaa 1599842  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 2844634 - 2844598
Alignment:
Q  1 ttatattcattagttttagattggaaaccaaaaccag 37  Q
    ||||||||||||||||| | |||||||||||||||||    
T  2844634 ttatattcattagttttgggttggaaaccaaaaccag 2844598  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 2856461 - 2856425
Alignment:
Q  1 ttatattcattagttttagattggaaaccaaaaccag 37  Q
    ||||||||||||||||| | |||||||||||||||||    
T  2856461 ttatattcattagttttgggttggaaaccaaaaccag 2856425  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 2904577 - 2904541
Alignment:
Q  1 ttatattcattagttttagattggaaaccaaaaccag 37  Q
    ||||||||||||||||| | |||||||||||||||||    
T  2904577 ttatattcattagttttgggttggaaaccaaaaccag 2904541  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 8529469 - 8529505
Alignment:
Q  1 ttatattcattagttttagattggaaaccaaaaccag 37  Q
    ||||||||||||||||||| |||||| ||||||||||    
T  8529469 ttatattcattagttttaggttggaatccaaaaccag 8529505  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 232
Target Start/End: Original strand, 8637669 - 8637721
Alignment:
Q  180 tttttctccaaagctaatctcacagcccgatgagggcgtttggatttattctc 232  Q
    ||||||||||||||||||||| |||| |||  |||||| |||| |||||||||    
T  8637669 tttttctccaaagctaatctcgcagcacgaatagggcgcttgggtttattctc 8637721  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 9443630 - 9443666
Alignment:
Q  1 ttatattcattagttttagattggaaaccaaaaccag 37  Q
    ||||||||||||||||||| |||||| ||||||||||    
T  9443630 ttatattcattagttttaggttggaatccaaaaccag 9443666  T

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