View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11867_low_32 (Length: 297)
Name: NF11867_low_32
Description: NF11867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11867_low_32 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 267; Significance: 1e-149; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 6 - 280
Target Start/End: Complemental strand, 38584823 - 38584549
Alignment:
| Q |
6 |
actgcataagttcatcgtttatagctttcactgcattttgtgatttcttcagttaatttaggtttcaaaattgtagaaatgtcatagttaatttgttaat |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38584823 |
actgcataagttcatcgtttatagctttcactgcattttgtgatttcttcagttaatttaggtttcaaaattgtagaaatgtcatagttaatttgttaat |
38584724 |
T |
|
| Q |
106 |
caaattctacgcatttcatttgctaatatgagcaatcaccgaaccttttttcatgagtaaaaatgttttgatctattttgacatgaattcacaattaagc |
205 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38584723 |
caaattctacgcacttcatttgctaatatgagcaatcaccaaaccttttttcatgagtaaaaatgttttgatctattttgacatgaattcacaattaagc |
38584624 |
T |
|
| Q |
206 |
ttcgtttatgttcggtaaaatcagagatctagaagttggagttctcgatcttaaatttcattacattgctatttt |
280 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38584623 |
ttcgtttatgttcggtaaaatcagagatctagaagttggagttctcgatcttaaatttcattacattgctatttt |
38584549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 163 - 280
Target Start/End: Complemental strand, 38877312 - 38877194
Alignment:
| Q |
163 |
taaaaatgttttgatctat-tttgacatgaattcacaattaagcttcgtttatgttcggtaaaatcagagatctagaagttggagttctcgatcttaaat |
261 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |||||| |||||| |||||| |||||||||| |
|
|
| T |
38877312 |
taaaaatgttttgatctatctttgacatgaattcacaattaagcatcgtttatgttcggtaaaatcaaagatcttgaagtttaagttcttgatcttaaat |
38877213 |
T |
|
| Q |
262 |
ttcattacattgctatttt |
280 |
Q |
| |
|
|||| ||| |||||||||| |
|
|
| T |
38877212 |
ttcagtacgttgctatttt |
38877194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 115
Target Start/End: Complemental strand, 38877393 - 38877325
Alignment:
| Q |
47 |
gatttcttcagttaatttaggtttcaaaattgtagaaatgtcatagttaatttgttaatcaaattctac |
115 |
Q |
| |
|
|||||||| ||||||| || |||| |||||| |||| |||||||| || |||||| |||||||||||| |
|
|
| T |
38877393 |
gatttctttagttaatgtatgtttaaaaattatagagatgtcatatgtactttgttgatcaaattctac |
38877325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University