View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11867_low_33 (Length: 288)
Name: NF11867_low_33
Description: NF11867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11867_low_33 |
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Alignment Details
Target: chr4 (Bit Score: 111; Significance: 5e-56; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 20 - 138
Target Start/End: Complemental strand, 35040282 - 35040165
Alignment:
| Q |
20 |
gtatctaattcttgaatggctttgtttaaaacttcaggattgttaagaagtaaagaaacagaccaggtcaatgtcgctgcggtagtgtctagtacctgct |
119 |
Q |
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| T |
35040282 |
gtatctaattcttgaatggctttgtttaaaacttcaggattgttaagaagtaaagaaacagaccaggtcaatgtcgctgcggtagtgtct-gtacctgct |
35040184 |
T |
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| Q |
120 |
agaattagtgcctgcaaaa |
138 |
Q |
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||||||||||||||||||| |
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| T |
35040183 |
agaattagtgcctgcaaaa |
35040165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 20 - 138
Target Start/End: Complemental strand, 35032265 - 35032148
Alignment:
| Q |
20 |
gtatctaattcttgaatggctttgtttaaaacttcaggattgttaagaagtaaagaaacagaccaggtcaatgtcgctgcggtagtgtctagtacctgct |
119 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||| |||||||| |||||||||| ||| ||| | ||| |
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| T |
35032265 |
gtatctaattcttgaatggctttgtttagaacttcaggattgttaagaagtaaagatagtgaccatgtcaatgttcctgcggtagtatct-gtagccgct |
35032167 |
T |
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| Q |
120 |
agaattagtgcctgcaaaa |
138 |
Q |
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||||||| ||||||||||| |
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| T |
35032166 |
agaattaatgcctgcaaaa |
35032148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 20 - 138
Target Start/End: Complemental strand, 35026319 - 35026202
Alignment:
| Q |
20 |
gtatctaattcttgaatggctttgtttaaaacttcaggattgttaagaagtaaagaaacagaccaggtcaatgtcgctgcggtagtgtctagtacctgct |
119 |
Q |
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||||||||||| |||||| ||||||||| || ||| ||||||||||||||||||| | || ||| |||||||| |||| ||||||||| ||| ||||| |
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| T |
35026319 |
gtatctaattcatgaatgactttgtttaggacctcacgattgttaagaagtaaagatagagtccaagtcaatgttcctgctgtagtgtct-gtagctgct |
35026221 |
T |
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| Q |
120 |
agaattagtgcctgcaaaa |
138 |
Q |
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||||||||||||||||||| |
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| T |
35026220 |
agaattagtgcctgcaaaa |
35026202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 198 - 275
Target Start/End: Complemental strand, 35040105 - 35040028
Alignment:
| Q |
198 |
gataattgaaagttgagtatttataatgtcgcaactnnnnnnntctattaggacattcagttgtttataccttcatct |
275 |
Q |
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||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |
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| T |
35040105 |
gataactgaaagttgagtatttataatgtcgcaactaaaaaaatctattaggacgttcagttgtttataccttcatct |
35040028 |
T |
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