View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11867_low_34 (Length: 279)
Name: NF11867_low_34
Description: NF11867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11867_low_34 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 37779588 - 37779319
Alignment:
| Q |
1 |
tggtgcacg-tattaaggccatggatttcaggttttgttcttgttgatttgattcccttatccttcaagtaaagagcttcctctaaggtcattaatagaa |
99 |
Q |
| |
|
||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37779588 |
tggtgcacgatattaaggccatggacttcaggttttgttcttgttgatttgattcccttatccttcaagtaaagagcttcctctaaggtcattaatagaa |
37779489 |
T |
|
| Q |
100 |
atcacaaacagattgatgaaatatgtatattattgaatggaaataatgagcatagaagctctacaatgaagggatcacatttcaagagtcagaaactcct |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37779488 |
atcacaaacagattgatgaaatatgtatattattgaatggaaataatgagcatagaagctctacaatgaagggatcacatttcaagagtcagaaactcct |
37779389 |
T |
|
| Q |
200 |
aaccagagagatgttctctcctaacctcctcaatagtaatagaatgaatgaattttggatcttgtctgtg |
269 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37779388 |
aaccagagagatgttctctcctaacctactcaatagtaatagaatgaatgaattttggatcttgtctgtg |
37779319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 105 - 166
Target Start/End: Original strand, 3382150 - 3382211
Alignment:
| Q |
105 |
aaacagattgatgaaatatgtatattattgaatggaaataatgagcatagaagctctacaat |
166 |
Q |
| |
|
||||||| ||||||||||||| ||||||| |||| |||| |||||||||||||||||||||| |
|
|
| T |
3382150 |
aaacagaatgatgaaatatgtgtattattcaatgtaaatgatgagcatagaagctctacaat |
3382211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University