View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11867_low_35 (Length: 263)

Name: NF11867_low_35
Description: NF11867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11867_low_35
NF11867_low_35
[»] chr1 (3 HSPs)
chr1 (150-243)||(21644460-21644553)
chr1 (149-247)||(23241006-23241104)
chr1 (1-34)||(40661758-40661791)
[»] chr5 (6 HSPs)
chr5 (111-154)||(4671734-4671777)
chr5 (1-31)||(11720918-11720948)
chr5 (1-34)||(22498966-22498999)
chr5 (1-34)||(33645693-33645726)
chr5 (1-34)||(35412981-35413014)
chr5 (1-34)||(39914925-39914958)
[»] chr7 (2 HSPs)
chr7 (1-35)||(22777362-22777396)
chr7 (1-31)||(45088900-45088930)
[»] chr3 (5 HSPs)
chr3 (1-34)||(4216403-4216436)
chr3 (1-35)||(46469301-46469335)
chr3 (1-34)||(31797261-31797294)
chr3 (1-34)||(46226081-46226114)
chr3 (3-35)||(49223029-49223061)
[»] chr4 (4 HSPs)
chr4 (1-35)||(49949358-49949392)
chr4 (1-34)||(8020651-8020684)
chr4 (1-34)||(27655755-27655788)
chr4 (3-35)||(50442750-50442782)
[»] chr2 (1 HSPs)
chr2 (1-35)||(40099386-40099420)
[»] chr8 (1 HSPs)
chr8 (3-35)||(34968581-34968613)


Alignment Details
Target: chr1 (Bit Score: 82; Significance: 8e-39; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 150 - 243
Target Start/End: Complemental strand, 21644553 - 21644460
Alignment:
Q  150 tttataaccctactatgaccaatggttggaatgtactcaaacaatactataatctgtcaaacaatgttcatgttaagttggcttattacggaat 243  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||    
T  21644553 tttataaccctactataaccaatggttggaatgtactcaaacaatactataatctgccaaacaatgttcatgttaagttggcttattagggaat 21644460  T

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Target: chr1; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 149 - 247
Target Start/End: Complemental strand, 23241104 - 23241006
Alignment:
Q  149 ttttataaccctactatgaccaatggttggaatgtactcaaacaatactataatctgtcaaacaatgttcatgttaagttggcttattacggaatgaat 247  Q
    ||||||||||||||||| || ||||||||||||||||||| | |||||||||||||| ||||||||||| ||||||||||||||||||| |||||||||    
T  23241104 ttttataaccctactataactaatggttggaatgtactcagataatactataatctgccaaacaatgttaatgttaagttggcttattatggaatgaat 23241006  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 40661791 - 40661758
Alignment:
Q  1 acaatgcataatatatgcaaggtcggggttcgaa 34  Q
    |||| |||||||||||||||||||||||||||||    
T  40661791 acaaagcataatatatgcaaggtcggggttcgaa 40661758  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 111 - 154
Target Start/End: Complemental strand, 4671777 - 4671734
Alignment:
Q  111 attagaattgcatctcttaagtacattatatttgtttcttttat 154  Q
    ||||||||||||||||||||||||||||||| ||||||||||||    
T  4671777 attagaattgcatctcttaagtacattatatctgtttcttttat 4671734  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 11720918 - 11720948
Alignment:
Q  1 acaatgcataatatatgcaaggtcggggttc 31  Q
    |||||||||||||||||||||||||||||||    
T  11720918 acaatgcataatatatgcaaggtcggggttc 11720948  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 22498966 - 22498999
Alignment:
Q  1 acaatgcataatatatgcaaggtcggggttcgaa 34  Q
    |||||||||||||||||||||||| |||||||||    
T  22498966 acaatgcataatatatgcaaggtctgggttcgaa 22498999  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 33645726 - 33645693
Alignment:
Q  1 acaatgcataatatatgcaaggtcggggttcgaa 34  Q
    |||||| |||||||||||||||||||||||||||    
T  33645726 acaatgtataatatatgcaaggtcggggttcgaa 33645693  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 35412981 - 35413014
Alignment:
Q  1 acaatgcataatatatgcaaggtcggggttcgaa 34  Q
    |||||||||||||||||||||||| |||||||||    
T  35412981 acaatgcataatatatgcaaggtccgggttcgaa 35413014  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 39914925 - 39914958
Alignment:
Q  1 acaatgcataatatatgcaaggtcggggttcgaa 34  Q
    |||||||||||||||||||||||| |||||||||    
T  39914925 acaatgcataatatatgcaaggtccgggttcgaa 39914958  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 22777396 - 22777362
Alignment:
Q  1 acaatgcataatatatgcaaggtcggggttcgaat 35  Q
    |||||||||||||||||||||||||||||||||||    
T  22777396 acaatgcataatatatgcaaggtcggggttcgaat 22777362  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 45088900 - 45088930
Alignment:
Q  1 acaatgcataatatatgcaaggtcggggttc 31  Q
    |||||||||||||||||||||||||||||||    
T  45088900 acaatgcataatatatgcaaggtcggggttc 45088930  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 4216436 - 4216403
Alignment:
Q  1 acaatgcataatatatgcaaggtcggggttcgaa 34  Q
    ||||||||||||||||||||||||||||||||||    
T  4216436 acaatgcataatatatgcaaggtcggggttcgaa 4216403  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 46469301 - 46469335
Alignment:
Q  1 acaatgcataatatatgcaaggtcggggttcgaat 35  Q
    |||||||||||||||| ||||||||||||||||||    
T  46469301 acaatgcataatatattcaaggtcggggttcgaat 46469335  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 31797294 - 31797261
Alignment:
Q  1 acaatgcataatatatgcaaggtcggggttcgaa 34  Q
    |||||||||||||||||||||||| |||||||||    
T  31797294 acaatgcataatatatgcaaggtctgggttcgaa 31797261  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 46226114 - 46226081
Alignment:
Q  1 acaatgcataatatatgcaaggtcggggttcgaa 34  Q
    |||||||||||||||||||||||| |||||||||    
T  46226114 acaatgcataatatatgcaaggtccgggttcgaa 46226081  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 35
Target Start/End: Complemental strand, 49223061 - 49223029
Alignment:
Q  3 aatgcataatatatgcaaggtcggggttcgaat 35  Q
    ||||||||||||||||||||| |||||||||||    
T  49223061 aatgcataatatatgcaaggttggggttcgaat 49223029  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 49949358 - 49949392
Alignment:
Q  1 acaatgcataatatatgcaaggtcggggttcgaat 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  49949358 acaatgcataatatatgcaaggtctgggttcgaat 49949392  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 8020684 - 8020651
Alignment:
Q  1 acaatgcataatatatgcaaggtcggggttcgaa 34  Q
    ||||||||||||||||||||||||| ||||||||    
T  8020684 acaatgcataatatatgcaaggtcgaggttcgaa 8020651  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 27655755 - 27655788
Alignment:
Q  1 acaatgcataatatatgcaaggtcggggttcgaa 34  Q
    |||||||||||||||||||||||| |||||||||    
T  27655755 acaatgcataatatatgcaaggtctgggttcgaa 27655788  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 35
Target Start/End: Complemental strand, 50442782 - 50442750
Alignment:
Q  3 aatgcataatatatgcaaggtcggggttcgaat 35  Q
    |||||||||||||||||||||| ||||||||||    
T  50442782 aatgcataatatatgcaaggtctgggttcgaat 50442750  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 40099420 - 40099386
Alignment:
Q  1 acaatgcataatatatgcaaggtcggggttcgaat 35  Q
    ||||||||||||||||||||||||| |||||||||    
T  40099420 acaatgcataatatatgcaaggtcgaggttcgaat 40099386  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 35
Target Start/End: Original strand, 34968581 - 34968613
Alignment:
Q  3 aatgcataatatatgcaaggtcggggttcgaat 35  Q
    |||||||||||||||||| ||||||||||||||    
T  34968581 aatgcataatatatgcaaagtcggggttcgaat 34968613  T

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