View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11867_low_36 (Length: 250)
Name: NF11867_low_36
Description: NF11867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11867_low_36 |
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| [»] scaffold0018 (1 HSPs) |
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| [»] scaffold0118 (1 HSPs) |
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Alignment Details
Target: scaffold0018 (Bit Score: 149; Significance: 8e-79; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 72195 - 72386
Alignment:
| Q |
1 |
ctttaatagttattggaattttgaaagaatgttactatgatgagtacattaatatcttatatatgtatatctttaattttcataagtcttcaagttggta |
100 |
Q |
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| T |
72195 |
ctttaatagttattggaattttgaaagaatgttactatgatgagtacattaatatcttatatgtatatatctttaattttcataagtcttcaagttggta |
72294 |
T |
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| Q |
101 |
tgttgacaatttaaacatgtaaggaaattctttaagattttatgtttaataagtaaatgatgaatcgttaattaggttcctgaatgaccactatt |
195 |
Q |
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| T |
72295 |
tgttgacaatttacacatgtgaggaaattcattaagattttatttttaacaagtaa---atgaatcgttaattaggttcctgaattaccactatt |
72386 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0118 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: scaffold0118
Description:
Target: scaffold0118; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 90 - 232
Target Start/End: Original strand, 37123 - 37262
Alignment:
| Q |
90 |
tcaagttggtatgttgacaatttaaacatgtaaggaaattctttaagattttatgtttaataagtaaatgatgaatcgttaattaggttcctgaatgacc |
189 |
Q |
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|||||||||||||| ||||||||||| |||| ||||||||| |||||||||||||||||||||||| |||| |||||||||||||||||| ||| ||| |
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| T |
37123 |
tcaagttggtatgtcgacaatttaaagatgtgaggaaattcattaagattttatgtttaataagtacatga---atcgttaattaggttccttaattacc |
37219 |
T |
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| Q |
190 |
actattgaattagtccctcaactatagatactaaacggtcctt |
232 |
Q |
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| T |
37220 |
actgttgaattagtccctcaactatagaaactaaacggtcctt |
37262 |
T |
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