View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11867_low_39 (Length: 241)

Name: NF11867_low_39
Description: NF11867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11867_low_39
NF11867_low_39
[»] chr4 (6 HSPs)
chr4 (1-224)||(9363328-9363549)
chr4 (11-61)||(27572517-27572567)
chr4 (12-58)||(30563606-30563652)
chr4 (9-53)||(25505208-25505252)
chr4 (25-61)||(36193433-36193469)
chr4 (14-61)||(22851319-22851366)
[»] chr2 (7 HSPs)
chr2 (1-62)||(37605975-37606036)
chr2 (9-62)||(39303420-39303473)
chr2 (9-53)||(13536888-13536932)
chr2 (9-53)||(20506603-20506647)
chr2 (11-59)||(21136425-21136473)
chr2 (9-53)||(11033204-11033248)
chr2 (12-59)||(8267385-8267432)
[»] chr1 (8 HSPs)
chr1 (11-62)||(3167365-3167416)
chr1 (9-60)||(13269370-13269421)
chr1 (11-62)||(40777956-40778007)
chr1 (9-54)||(8221766-8221811)
chr1 (1-53)||(45885893-45885945)
chr1 (10-62)||(46149931-46149983)
chr1 (11-62)||(4941676-4941727)
chr1 (9-62)||(23288601-23288654)
[»] chr6 (4 HSPs)
chr6 (1-60)||(24209298-24209357)
chr6 (9-60)||(2603876-2603927)
chr6 (8-61)||(24585142-24585195)
chr6 (9-53)||(3861016-3861060)
[»] chr7 (3 HSPs)
chr7 (9-61)||(7738892-7738944)
chr7 (13-59)||(2746799-2746845)
chr7 (11-53)||(35759231-35759273)
[»] chr8 (3 HSPs)
chr8 (12-59)||(17845006-17845053)
chr8 (9-62)||(1214246-1214299)
chr8 (9-49)||(13241225-13241265)
[»] chr5 (1 HSPs)
chr5 (9-62)||(41732347-41732400)
[»] scaffold0443 (1 HSPs)
scaffold0443 (11-60)||(7588-7637)
[»] chr3 (3 HSPs)
chr3 (11-60)||(26104547-26104596)
chr3 (11-51)||(52032914-52032954)
chr3 (9-53)||(53461728-53461772)


Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 9363328 - 9363549
Alignment:
Q  1 caaatgcttgtaatttatctgtcgtataatatacttataaccaaattaattttatagaggccnnnnnnnnnncaccaaattttttgaagcataaagccct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||    
T  9363328 caaatgcttgtaatttatctgtcgtataatatacttataaccaaattaattttatagaggcctttttttt--caccaaattttttgaagcataaagccct 9363425  T
Q  101 tgtttgggttgcttgaccgttaggccgggccagtcagcttgtgtttacaaatattgttctcaccaaatgagaataaagtagtaataactaataagcatat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9363426 tgtttgggttgcttgaccgttaggccgggccagtcagcttgtgtttacaaatattgttctcaccaaatgagaataaagtagtaataactaataagcatat 9363525  T
Q  201 atgtgcagtttgatgagtgtaaaa 224  Q
    ||||||||||||||||| ||||||    
T  9363526 atgtgcagtttgatgagagtaaaa 9363549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 11 - 61
Target Start/End: Complemental strand, 27572567 - 27572517
Alignment:
Q  11 taatttatctgtcgtataatatacttataaccaaattaattttatagaggc 61  Q
    ||||||||||||| ||||||||| ||||||||||||||||||| |||||||    
T  27572567 taatttatctgtcatataatataattataaccaaattaattttttagaggc 27572517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 12 - 58
Target Start/End: Complemental strand, 30563652 - 30563606
Alignment:
Q  12 aatttatctgtcgtataatatacttataaccaaattaattttataga 58  Q
    |||||||||||| ||||||||||||||||||||||||||||| ||||    
T  30563652 aatttatctgtcatataatatacttataaccaaattaattttttaga 30563606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 25505252 - 25505208
Alignment:
Q  9 tgtaatttatctgtcgtataatatacttataaccaaattaatttt 53  Q
    ||||||||||||||| |||||||||| ||||||||||||||||||    
T  25505252 tgtaatttatctgtcatataatatacctataaccaaattaatttt 25505208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 36193433 - 36193469
Alignment:
Q  25 tataatatacttataaccaaattaattttatagaggc 61  Q
    ||||||||||||||||||||||||||||| |||||||    
T  36193433 tataatatacttataaccaaattaattttttagaggc 36193469  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 61
Target Start/End: Original strand, 22851319 - 22851366
Alignment:
Q  14 tttatctgtcgtataatatacttataaccaaattaattttatagaggc 61  Q
    ||||||| || ||| ||||||||||||||||||||||||| |||||||    
T  22851319 tttatctatcatatgatatacttataaccaaattaattttttagaggc 22851366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 37605975 - 37606036
Alignment:
Q  1 caaatgcttgtaatttatctgtcgtataatatacttataaccaaattaattttatagaggcc 62  Q
    ||||||||||||||||||||||| ||||| ||||||||||| ||||||||||| ||||||||    
T  37605975 caaatgcttgtaatttatctgtcatataacatacttataactaaattaattttttagaggcc 37606036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 62
Target Start/End: Complemental strand, 39303473 - 39303420
Alignment:
Q  9 tgtaatttatctgtcgtataatatacttataaccaaattaattttatagaggcc 62  Q
    ||||||||||||||  ||||||||| ||||||||||||||||||| ||||||||    
T  39303473 tgtaatttatctgttatataatatatttataaccaaattaattttttagaggcc 39303420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 13536932 - 13536888
Alignment:
Q  9 tgtaatttatctgtcgtataatatacttataaccaaattaatttt 53  Q
    ||||||||||||||| |||||||||||||| ||||||||||||||    
T  13536932 tgtaatttatctgtcatataatatacttatgaccaaattaatttt 13536888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 20506647 - 20506603
Alignment:
Q  9 tgtaatttatctgtcgtataatatacttataaccaaattaatttt 53  Q
    |||||||||||||||  ||||||||||||||||||||||||||||    
T  20506647 tgtaatttatctgtcacataatatacttataaccaaattaatttt 20506603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 11 - 59
Target Start/End: Original strand, 21136425 - 21136473
Alignment:
Q  11 taatttatctgtcgtataatatacttataaccaaattaattttatagag 59  Q
    ||||||||||||| |||||||| |||||||||||||||||||| |||||    
T  21136425 taatttatctgtcatataatattcttataaccaaattaattttttagag 21136473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 11033204 - 11033248
Alignment:
Q  9 tgtaatttatctgtcgtataatatacttataaccaaattaatttt 53  Q
    |||| ||||||| || |||||||||||||||||||||||||||||    
T  11033204 tgtagtttatctatcatataatatacttataaccaaattaatttt 11033248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 8267432 - 8267385
Alignment:
Q  12 aatttatctgtcgtataatatacttataaccaaattaattttatagag 59  Q
    ||||||||| || |||||||||||||||| |||||||||||| |||||    
T  8267432 aatttatctctcatataatatacttataatcaaattaattttttagag 8267385  T

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Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 11 - 62
Target Start/End: Complemental strand, 3167416 - 3167365
Alignment:
Q  11 taatttatctgtcgtataatatacttataaccaaattaattttatagaggcc 62  Q
    ||||||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  3167416 taatttatctgtcttataatatacttataaccaaattaattttttagaggcc 3167365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 9 - 60
Target Start/End: Original strand, 13269370 - 13269421
Alignment:
Q  9 tgtaatttatctgtcgtataatatacttataaccaaattaattttatagagg 60  Q
    ||||||||||||||| ||||||||||||| ||||||||||||||| ||||||    
T  13269370 tgtaatttatctgtcatataatatacttacaaccaaattaattttttagagg 13269421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 11 - 62
Target Start/End: Complemental strand, 40778007 - 40777956
Alignment:
Q  11 taatttatctgtcgtataatatacttataaccaaattaattttatagaggcc 62  Q
    ||||||||||||| ||||||||||||||||||||||||| ||| ||||||||    
T  40778007 taatttatctgtcatataatatacttataaccaaattaaatttttagaggcc 40777956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 54
Target Start/End: Original strand, 8221766 - 8221811
Alignment:
Q  9 tgtaatttatctgtcgtataatatacttataaccaaattaatttta 54  Q
    |||| |||||||||| ||||||||||||||||||||||||||||||    
T  8221766 tgtactttatctgtcatataatatacttataaccaaattaatttta 8221811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 45885945 - 45885893
Alignment:
Q  1 caaatgcttgtaatttatctgtcgtataatatacttataaccaaattaatttt 53  Q
    ||||| |||||||||||| |||| ||||||||| |||||| ||||||||||||    
T  45885945 caaatacttgtaatttatttgtcatataatatatttataagcaaattaatttt 45885893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 62
Target Start/End: Complemental strand, 46149983 - 46149931
Alignment:
Q  10 gtaatttatctgtcgtataatatacttataaccaaattaattttatagaggcc 62  Q
    ||||||||| |||  ||||||||| ||||||||||||||||||| ||||||||    
T  46149983 gtaatttatttgttatataatatatttataaccaaattaattttttagaggcc 46149931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 62
Target Start/End: Complemental strand, 4941727 - 4941676
Alignment:
Q  11 taatttatctgtcgtataatatacttataaccaaattaattttatagaggcc 62  Q
    |||||||| |||| ||||||||| |||| |||||||||||||| ||||||||    
T  4941727 taatttatttgtcatataatataattatgaccaaattaattttttagaggcc 4941676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 62
Target Start/End: Complemental strand, 23288654 - 23288601
Alignment:
Q  9 tgtaatttatctgtcgtataatatacttataaccaaattaattttatagaggcc 62  Q
    |||||||||||| || ||||||||| ||||||  ||||||||||| ||||||||    
T  23288654 tgtaatttatctatcatataatatatttataattaaattaattttttagaggcc 23288601  T

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Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 24209298 - 24209357
Alignment:
Q  1 caaatgcttgtaatttatctgtcgtataatatacttataaccaaattaattttatagagg 60  Q
    ||||||| |||||||||||| |  ||||||||||||||||||||||||||||| ||||||    
T  24209298 caaatgcatgtaatttatctatgatataatatacttataaccaaattaattttttagagg 24209357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 60
Target Start/End: Original strand, 2603876 - 2603927
Alignment:
Q  9 tgtaatttatctgtcgtataatatacttataaccaaattaattttatagagg 60  Q
    ||||||||||||||  ||||||||||||||||||||||||||| | ||||||    
T  2603876 tgtaatttatctgttatataatatacttataaccaaattaattatttagagg 2603927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 24585195 - 24585142
Alignment:
Q  8 ttgtaatttatctgtcgtataatatacttataaccaaattaattttatagaggc 61  Q
    ||||||||||||| || ||||||||||||||||| | ||||||||| |||||||    
T  24585195 ttgtaatttatctctcatataatatacttataactagattaattttttagaggc 24585142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 3861016 - 3861060
Alignment:
Q  9 tgtaatttatctgtcgtataatatacttataaccaaattaatttt 53  Q
    |||||||||| |||| ||||||||| ||||||| |||||||||||    
T  3861016 tgtaatttatatgtcatataatataattataactaaattaatttt 3861060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 7738892 - 7738944
Alignment:
Q  9 tgtaatttatctgtcgtataatatacttataaccaaattaattttatagaggc 61  Q
    ||||||||||||||| ||||||||| ||||||||||||| ||||| |||||||    
T  7738892 tgtaatttatctgtcatataatatatttataaccaaattgattttttagaggc 7738944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 2746799 - 2746845
Alignment:
Q  13 atttatctgtcgtataatatacttataaccaaattaattttatagag 59  Q
    |||||||| || ||||||||||||||||| ||||||||||| |||||    
T  2746799 atttatctatcatataatatacttataacaaaattaattttttagag 2746845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 53
Target Start/End: Original strand, 35759231 - 35759273
Alignment:
Q  11 taatttatctgtcgtataatatacttataaccaaattaatttt 53  Q
    |||||||||| || ||||||||||||||||| |||||||||||    
T  35759231 taatttatctatcatataatatacttataactaaattaatttt 35759273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 59
Target Start/End: Original strand, 17845006 - 17845053
Alignment:
Q  12 aatttatctgtcgtataatatacttataaccaaattaattttatagag 59  Q
    |||||||||||  ||||||||||||||||||||||||||||| |||||    
T  17845006 aatttatctgttatataatatacttataaccaaattaattttttagag 17845053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 62
Target Start/End: Complemental strand, 1214299 - 1214246
Alignment:
Q  9 tgtaatttatctgtcgtataatatacttataaccaaattaattttatagaggcc 62  Q
    |||||||||| |||| ||||||||||||||||   |||||||||| ||||||||    
T  1214299 tgtaatttatttgtcatataatatacttataaattaattaattttttagaggcc 1214246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 13241225 - 13241265
Alignment:
Q  9 tgtaatttatctgtcgtataatatacttataaccaaattaa 49  Q
    |||||||||||| || ||||||||||| |||||||||||||    
T  13241225 tgtaatttatctatcatataatatactcataaccaaattaa 13241265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 62
Target Start/End: Original strand, 41732347 - 41732400
Alignment:
Q  9 tgtaatttatctgtcgtataatatacttataaccaaattaattttatagaggcc 62  Q
    |||||||||||| || ||||||||||||||||||| ||||| ||| ||||||||    
T  41732347 tgtaatttatctatcatataatatacttataaccatattaaatttttagaggcc 41732400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0443 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0443
Description:

Target: scaffold0443; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 60
Target Start/End: Original strand, 7588 - 7637
Alignment:
Q  11 taatttatctgtcgtataatatacttataaccaaattaattttatagagg 60  Q
    |||||||||| || |||||||| ||| |||||||||||||||| ||||||    
T  7588 taatttatctatcatataatatgcttctaaccaaattaattttttagagg 7637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 60
Target Start/End: Original strand, 26104547 - 26104596
Alignment:
Q  11 taatttatctgtcgtataatatacttataaccaaattaattttatagagg 60  Q
    |||||||| |||| ||||||||| ||||||| ||||||||||| ||||||    
T  26104547 taatttatttgtcatataatataattataactaaattaattttttagagg 26104596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 51
Target Start/End: Original strand, 52032914 - 52032954
Alignment:
Q  11 taatttatctgtcgtataatatacttataaccaaattaatt 51  Q
    |||||||| |||| ||||||||||||||||| |||||||||    
T  52032914 taatttatatgtcatataatatacttataacaaaattaatt 52032954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 53461728 - 53461772
Alignment:
Q  9 tgtaatttatctgtcgtataatatacttataaccaaattaatttt 53  Q
    |||||||||| |||| ||||||||| ||||||||||||| |||||    
T  53461728 tgtaatttatttgtcatataatatatttataaccaaatttatttt 53461772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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