View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11867_low_9 (Length: 543)

Name: NF11867_low_9
Description: NF11867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11867_low_9
NF11867_low_9
[»] chr2 (9 HSPs)
chr2 (250-404)||(21787699-21787846)
chr2 (461-528)||(21788844-21788911)
chr2 (3-111)||(41849224-41849333)
chr2 (10-111)||(17651484-17651585)
chr2 (175-232)||(34409326-34409383)
chr2 (170-233)||(41849344-41849407)
chr2 (14-63)||(26576300-26576349)
chr2 (38-102)||(38783606-38783670)
chr2 (180-233)||(17651616-17651669)
[»] chr5 (1 HSPs)
chr5 (3-80)||(40838127-40838204)
[»] chr7 (4 HSPs)
chr7 (31-102)||(27994152-27994223)
chr7 (14-110)||(11816770-11816867)
chr7 (138-231)||(22291133-22291226)
chr7 (14-102)||(11820374-11820462)
[»] chr8 (7 HSPs)
chr8 (35-93)||(2874948-2875006)
chr8 (5-102)||(13097660-13097757)
chr8 (180-233)||(27402657-27402710)
chr8 (138-255)||(18393289-18393402)
chr8 (13-69)||(31772663-31772719)
chr8 (10-93)||(15131812-15131895)
chr8 (24-110)||(18393393-18393479)
[»] chr6 (6 HSPs)
chr6 (157-233)||(17261930-17262006)
chr6 (170-258)||(17540370-17540454)
chr6 (5-102)||(17261814-17261911)
chr6 (180-233)||(34010950-34011003)
chr6 (32-96)||(6821278-6821342)
chr6 (10-54)||(17540250-17540294)
[»] chr4 (3 HSPs)
chr4 (170-233)||(55681037-55681100)
chr4 (14-88)||(40289005-40289079)
chr4 (9-65)||(18198688-18198744)
[»] chr3 (2 HSPs)
chr3 (10-55)||(26565533-26565578)
chr3 (179-227)||(12704610-12704658)
[»] chr1 (2 HSPs)
chr1 (18-63)||(3387883-3387928)
chr1 (14-102)||(16426663-16426751)
[»] scaffold0002 (1 HSPs)
scaffold0002 (9-65)||(289053-289109)


Alignment Details
Target: chr2 (Bit Score: 69; Significance: 1e-30; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 250 - 404
Target Start/End: Original strand, 21787699 - 21787846
Alignment:
Q  250 ggttataaaagatgatgatatcattaagaaaatagaggtgactactgacagataacaagatagtacaaaagtataacaaagtttaaaataaattagaatt 349  Q
    |||||||| ||||||||||||||||||||||||| |||||||        ||||||||||||||||| |||||||||||| |||||||||||||||||||    
T  21787699 ggttataatagatgatgatatcattaagaaaatataggtgacg-------gataacaagatagtacataagtataacaaaatttaaaataaattagaatt 21787791  T
Q  350 taagtgggttttaattttaacccacgaaacctatttgtaaggtaagggtatccat 404  Q
    | |   | |||||||| || ||| | ||||| |||||||||||||||||||||||    
T  21787792 ttaagagattttaattctatcccgcaaaaccaatttgtaaggtaagggtatccat 21787846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 461 - 528
Target Start/End: Original strand, 21788844 - 21788911
Alignment:
Q  461 tgagcttcaaaatcaagttataaaaattatatacacaatcaaaagtaaataaaaatgcatattttgat 528  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21788844 tgagcttcaaaatcaagttataaaaattatatacacaatcaaaagtaaataaaaatgcatattttgat 21788911  T

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Target: chr2; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 3 - 111
Target Start/End: Original strand, 41849224 - 41849333
Alignment:
Q  3 agacatatgtctgagttgtccgacatgtctcatataagtgttatataggtgttggagaccggtccaaagagcgtcgaaataaagaagaaaataactta-t 101  Q
    |||||| ||| |||||||||||||| | |||||||||||||||||||||||| ||| ||| |||||| ||| ||||||||||| |||||||||||||| |    
T  41849224 agacatttgtttgagttgtccgacacgcctcatataagtgttatataggtgtcggacaccagtccaaggagtgtcgaaataaaaaagaaaataacttatt 41849323  T
Q  102 taggacactt 111  Q
    ||||||||||    
T  41849324 taggacactt 41849333  T

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Target: chr2; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 10 - 111
Target Start/End: Original strand, 17651484 - 17651585
Alignment:
Q  10 tgtctgagttgtccgacatgtctcatataagtgttatataggtgttggagaccggtccaaagagcgtcgaaataaagaagaaaataacttattaggacac 109  Q
    ||||| |||||||||||| | ||||||||||||||||||| |||| ||| ||||||| || ||| |||||| |||||||||||| ||||  |||||||||    
T  17651484 tgtctaagttgtccgacacgcctcatataagtgttatataagtgtcggacaccggtcaaaggagtgtcgaagtaaagaagaaaacaactatttaggacac 17651583  T
Q  110 tt 111  Q
    ||    
T  17651584 tt 17651585  T

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Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 175 - 232
Target Start/End: Complemental strand, 34409383 - 34409326
Alignment:
Q  175 taggggtgtcggacaccaacgcgtttccgacaccacgacacgcctaatcctagaggtg 232  Q
    |||| |||||||||| |||||||| ||||||||| ||||||||||| |||||||||||    
T  34409383 taggagtgtcggacatcaacgcgtgtccgacaccgcgacacgcctagtcctagaggtg 34409326  T

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Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 170 - 233
Target Start/End: Original strand, 41849344 - 41849407
Alignment:
Q  170 tgtcgtaggggtgtcggacaccaacgcgtttccgacaccacgacacgcctaatcctagaggtgt 233  Q
    |||| |||| |||||||||||| |||||| || |||||| ||||||||||||| ||||||||||    
T  41849344 tgtcataggagtgtcggacaccgacgcgtgtctgacaccgcgacacgcctaattctagaggtgt 41849407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 14 - 63
Target Start/End: Original strand, 26576300 - 26576349
Alignment:
Q  14 tgagttgtccgacatgtctcatataagtgttatataggtgttggagaccg 63  Q
    |||||||||||||| | ||| ||| |||||||||||||||||||||||||    
T  26576300 tgagttgtccgacacggctcgtatgagtgttatataggtgttggagaccg 26576349  T

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Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 38 - 102
Target Start/End: Complemental strand, 38783670 - 38783606
Alignment:
Q  38 aagtgttatataggtgttggagaccggtccaaagagcgtcgaaataaagaagaaaataacttatt 102  Q
    |||||||||| |||||| ||| |||||||||| ||| |||||| || | ||||||||||||||||    
T  38783670 aagtgttatacaggtgtcggacaccggtccaaggagtgtcgaagtagaaaagaaaataacttatt 38783606  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 180 - 233
Target Start/End: Original strand, 17651616 - 17651669
Alignment:
Q  180 gtgtcggacaccaacgcgtttccgacaccacgacacgcctaatcctagaggtgt 233  Q
    |||||||||||  |||||| || |||||| ||||||||||||||||| ||||||    
T  17651616 gtgtcggacactgacgcgtgtcggacaccgcgacacgcctaatcctaaaggtgt 17651669  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 3 - 80
Target Start/End: Original strand, 40838127 - 40838204
Alignment:
Q  3 agacatatgtctgagttgtccgacatgtctcatataagtgttatataggtgttggagaccggtccaaagagcgtcgaa 80  Q
    |||||| |||||||||||||||||| | ||  ||| |||||||||||| ||| ||| |||||||||||||| ||||||    
T  40838127 agacatttgtctgagttgtccgacacgacttgtatgagtgttatatagatgtcggacaccggtccaaagagtgtcgaa 40838204  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 31 - 102
Target Start/End: Original strand, 27994152 - 27994223
Alignment:
Q  31 ctcatataagtgttatataggtgttggagaccggtccaaagagcgtcgaaataaagaagaaaataacttatt 102  Q
    |||||||||||||||||||||| |  || ||||||||||| || || ||| |||||||||||| ||||||||    
T  27994152 ctcatataagtgttatataggtatcagacaccggtccaaaaagtgttgaagtaaagaagaaaacaacttatt 27994223  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 14 - 110
Target Start/End: Complemental strand, 11816867 - 11816770
Alignment:
Q  14 tgagttgtccgacatgtctcatataagtgttatataggtgttggagaccggtccaaagagcgtcgaaataaagaagaaaataactta-ttaggacact 110  Q
    ||||||||||||||   ||||||||||||| ||||| ||||  || || | ||  | ||| |||||||||||||||||||||||||| ||||||||||    
T  11816867 tgagttgtccgacacacctcatataagtgtcatataagtgtcagacacggatcttaggagtgtcgaaataaagaagaaaataacttatttaggacact 11816770  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 231
Target Start/End: Original strand, 22291133 - 22291226
Alignment:
Q  138 ttaggacacttgttcaacgcgtgtcatacgaatgtcgtaggggtgtcggacaccaacgcgtttccgacaccacgacacgcctaatcctagaggt 231  Q
    |||||||||  ||||||| |||||  ||||  |||| |||| |||||||||||| |||||| || |||||  ||||| ||||| ||||||||||    
T  22291133 ttaggacaccggttcaacacgtgtggtacgggtgtcataggagtgtcggacaccgacgcgtgtcggacactgcgacatgcctagtcctagaggt 22291226  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 14 - 102
Target Start/End: Complemental strand, 11820462 - 11820374
Alignment:
Q  14 tgagttgtccgacatgtctcatataagtgttatataggtgttggagaccggtccaaagagcgtcgaaataaagaagaaaataacttatt 102  Q
    ||||||||| ||||   |||| ||||||||||||||| |||  || |||| ||| ||||| | | || |||||||||||||||||||||    
T  11820462 tgagttgtctgacacacctcaaataagtgttatatagatgtcagacaccgatcctaagagtgacaaagtaaagaagaaaataacttatt 11820374  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 35 - 93
Target Start/End: Complemental strand, 2875006 - 2874948
Alignment:
Q  35 tataagtgttatataggtgttggagaccggtccaaagagcgtcgaaataaagaagaaaa 93  Q
    ||||||| |||||||||||||||| ||| |||||| ||| ||| |||||||||||||||    
T  2875006 tataagttttatataggtgttggacaccagtccaaggagtgtcaaaataaagaagaaaa 2874948  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 5 - 102
Target Start/End: Original strand, 13097660 - 13097757
Alignment:
Q  5 acatatgtctgagttgtccgacatgtctcatataagtgttatataggtgttggagaccggtccaaagagcgtcgaaataaagaagaaaataacttatt 102  Q
    |||| ||| ||| |||||||||| |  ||||||||||||||||||||||| | | ||||||| || ||| |||  | |||||||||||||| ||||||    
T  13097660 acatttgtttgaattgtccgacacgcttcatataagtgttatataggtgtcgcacaccggtctaaggagtgtcacagtaaagaagaaaatatcttatt 13097757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 180 - 233
Target Start/End: Original strand, 27402657 - 27402710
Alignment:
Q  180 gtgtcggacaccaacgcgtttccgacaccacgacacgcctaatcctagaggtgt 233  Q
    |||||||||||| || ||| || |||||||| ||||||||||||||||||||||    
T  27402657 gtgtcggacaccgacacgtgtcagacaccacaacacgcctaatcctagaggtgt 27402710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 138 - 255
Target Start/End: Complemental strand, 18393402 - 18393289
Alignment:
Q  138 ttaggacacttgttcaacgcgtgtcatacgaatgtcgtaggggtgtcggacaccaacgcgtttccgacaccacgacacgcctaatcctagaggtgtgtgt 237  Q
    |||||||||| |||| || |||||| ||||| |||| |||| |||||| ||||| || | | || |||||  ||| ||||||||||||||||    ||||    
T  18393402 ttaggacactagttcgacacgtgtcgtacgagtgtcataggagtgtcgaacacctacacatgtcagacactccgaaacgcctaatcctagag----gtgt 18393307  T
Q  238 atgtgcttcataggttat 255  Q
     |||||||||||||||||    
T  18393306 ttgtgcttcataggttat 18393289  T

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Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 69
Target Start/End: Original strand, 31772663 - 31772719
Alignment:
Q  13 ctgagttgtccgacatgtctcatataagtgttatataggtgttggagaccggtccaa 69  Q
    ||||||||||||||| ||||| ||| |||||||||||||| | ||| ||||||||||    
T  31772663 ctgagttgtccgacacgtctcgtatgagtgttatataggtatcggacaccggtccaa 31772719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 93
Target Start/End: Complemental strand, 15131895 - 15131812
Alignment:
Q  10 tgtctgagttgtccgacatgtctcatataagtgttatataggtgttggagaccggtccaaagagcgtcgaaataaagaagaaaa 93  Q
    |||||||||||| |||||   ||||||| |||||||||||||||| ||| |||||||  | ||| |||||| ||||||| ||||    
T  15131895 tgtctgagttgttcgacactgctcatatgagtgttatataggtgtcggacaccggtcgtaggagtgtcgaagtaaagaaaaaaa 15131812  T

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Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 110
Target Start/End: Complemental strand, 18393479 - 18393393
Alignment:
Q  24 gacatgtctcatataagtgttatataggtgttggagaccggtccaaagagcgtcgaaataaagaagaaaataactta-ttaggacact 110  Q
    |||| ||||||||| |||||||||||||||||||| ||||| |||  ||| |||||| |||||| ||||| || ||| ||||||||||    
T  18393479 gacacgtctcatatgagtgttatataggtgttggacaccgg-ccagggagtgtcgaagtaaagatgaaaacaaattatttaggacact 18393393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 157 - 233
Target Start/End: Original strand, 17261930 - 17262006
Alignment:
Q  157 cgtgtcatacgaatgtcgtaggggtgtcggacaccaacgcgtttccgacaccacgacacgcctaatcctagaggtgt 233  Q
    |||||| ||||| ||||||||| |||| |||||   |||||| || ||||||||||||||||||||  |||||||||    
T  17261930 cgtgtcgtacgagtgtcgtaggagtgttggacaatgacgcgtgtcggacaccacgacacgcctaatgatagaggtgt 17262006  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 170 - 258
Target Start/End: Original strand, 17540370 - 17540454
Alignment:
Q  170 tgtcgtaggggtgtcggacaccaacgcgtttccgacaccacgacacgcctaatcctagaggtgtgtgtatgtgcttcataggttataaa 258  Q
    |||| |||| |||||||||||| | |||| || |||||  ||||||| ||||||||||||    |||||||||||||||| ||||||||    
T  17540370 tgtcataggagtgtcggacaccgatgcgtatcggacactgcgacacgtctaatcctagag----gtgtatgtgcttcatatgttataaa 17540454  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 102
Target Start/End: Original strand, 17261814 - 17261911
Alignment:
Q  5 acatatgtctgagttgtccgacatgtctcatataagtgttatataggtgttggagaccggtccaaagagcgtcgaaataaagaagaaaataacttatt 102  Q
    |||||||| ||| ||||||||||    ||||||||||||||   |||||| ||| ||||||| ||  || ||||||||||||||||||| | ||||||    
T  17261814 acatatgtttgaattgtccgacacacttcatataagtgttaagcaggtgtcggacaccggtctaagaagtgtcgaaataaagaagaaaacaccttatt 17261911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 180 - 233
Target Start/End: Complemental strand, 34011003 - 34010950
Alignment:
Q  180 gtgtcggacaccaacgcgtttccgacaccacgacacgcctaatcctagaggtgt 233  Q
    |||||||||||| |||||| || |||||| ||||||||||| |||| |||||||    
T  34011003 gtgtcggacaccgacgcgtgtcggacaccgcgacacgcctagtccttgaggtgt 34010950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 32 - 96
Target Start/End: Original strand, 6821278 - 6821342
Alignment:
Q  32 tcatataagtgttatataggtgttggagaccggtccaaagagcgtcgaaataaagaagaaaataa 96  Q
    |||||||||||||||||| ||||  || |  ||||||||| | || |||||||||||||||||||    
T  6821278 tcatataagtgttatataagtgtgtgacattggtccaaagggtgttgaaataaagaagaaaataa 6821342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 17540250 - 17540294
Alignment:
Q  10 tgtctgagttgtccgacatgtctcatataagtgttatataggtgt 54  Q
    |||||||||||||||||| |  |||||| ||||||||||||||||    
T  17540250 tgtctgagttgtccgacacggttcatatgagtgttatataggtgt 17540294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 170 - 233
Target Start/End: Original strand, 55681037 - 55681100
Alignment:
Q  170 tgtcgtaggggtgtcggacaccaacgcgtttccgacaccacgacacgcctaatcctagaggtgt 233  Q
    |||| |||| |||||||||||| |||||| || |||||| ||||||||||| |||| |||||||    
T  55681037 tgtcataggagtgtcggacaccgacgcgtgtcggacaccgcgacacgcctagtcctcgaggtgt 55681100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 14 - 88
Target Start/End: Complemental strand, 40289079 - 40289005
Alignment:
Q  14 tgagttgtccgacatgtctcatataagtgttatataggtgttggagaccggtccaaagagcgtcgaaataaagaa 88  Q
    |||||||||||||||| ||| ||| |||||||||||||||| ||| |||| ||  | ||| |||||| |||||||    
T  40289079 tgagttgtccgacatgactcgtatgagtgttatataggtgtcggacaccgatcgtaggagtgtcgaagtaaagaa 40289005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 18198744 - 18198688
Alignment:
Q  9 atgtctgagttgtccgacatgtctcatataagtgttatataggtgttggagaccggt 65  Q
    |||||| ||||||| || ||||||| ||| |||||||||||||||| ||| ||||||    
T  18198744 atgtctcagttgtctgatatgtctcgtatgagtgttatataggtgtcggacaccggt 18198688  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 55
Target Start/End: Original strand, 26565533 - 26565578
Alignment:
Q  10 tgtctgagttgtccgacatgtctcatataagtgttatataggtgtt 55  Q
    |||||||||||||||||| | ||| ||| |||||||||||||||||    
T  26565533 tgtctgagttgtccgacacggctcgtatgagtgttatataggtgtt 26565578  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 179 - 227
Target Start/End: Complemental strand, 12704658 - 12704610
Alignment:
Q  179 ggtgtcggacaccaacgcgtttccgacaccacgacacgcctaatcctag 227  Q
    |||||||||||||||||| | ||||||||||  ||||| ||||||||||    
T  12704658 ggtgtcggacaccaacgcatgtccgacaccagaacacgtctaatcctag 12704610  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 3387883 - 3387928
Alignment:
Q  18 ttgtccgacatgtctcatataagtgttatataggtgttggagaccg 63  Q
    ||||| |||| ||||||||| |||||||||||||||||||| ||||    
T  3387883 ttgtcggacacgtctcatatgagtgttatataggtgttggacaccg 3387928  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 102
Target Start/End: Original strand, 16426663 - 16426751
Alignment:
Q  14 tgagttgtccgacatgtctcatataagtgttatat-aggtgttggagaccggtccaaagagcgtcgaaataaagaagaaaataacttatt 102  Q
    |||||||||| ||| | |||||||||||||||||| |||||| | | | |||||||||||| ||| || ||||||| |||| ||||||||    
T  16426663 tgagttgtccaacacgcctcatataagtgttatataaggtgtcgaaca-cggtccaaagagtgtcaaagtaaagaaaaaaaaaacttatt 16426751  T

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Target: scaffold0002 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 289053 - 289109
Alignment:
Q  9 atgtctgagttgtccgacatgtctcatataagtgttatataggtgttggagaccggt 65  Q
    |||||| ||||||| || ||||||| ||| |||||||||||||||| ||| ||||||    
T  289053 atgtctcagttgtctgatatgtctcgtatgagtgttatataggtgtcggacaccggt 289109  T

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