View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11868_high_1 (Length: 443)
Name: NF11868_high_1
Description: NF11868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11868_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 19 - 428
Target Start/End: Original strand, 13412090 - 13412495
Alignment:
| Q |
19 |
ttagaaaatttaaagacaataaaggaacatacgtgcaattcaaagacttgcaaattcaagtctaagaatggtcttgaattgagagctcaaaatcttgaaa |
118 |
Q |
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| T |
13412090 |
ttagaaaatttaaagacaataaaggaacatacgtgcaattcaaagacttgcaaattcaagtctaagaatggtcttgaattgagagctcagaatcttgaaa |
13412189 |
T |
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| Q |
119 |
caatttgaagaaggagagaaaaattgtgatgaagaaattgagtttatttgtgttgctattggcatgtatttaagtaatatgtatttcaataactgccctt |
218 |
Q |
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| T |
13412190 |
caatttgaagaaggagagaaaaattgtgatgaag----tgagtttatttgtgttgctattggcatgtatttaagtagtatgtatttcaataactgccctt |
13412285 |
T |
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| Q |
219 |
atatttcatcattattaacgataatgcctcgtgacgagttataatataaagtggtccgtgataattttttgtctttatctttgtcctctttcattattca |
318 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
13412286 |
atatttcatcattattaacgataatgcctcttgacgagttataatataaagtggtccatgataattttttgtctttatctttgtcctctttcattattca |
13412385 |
T |
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| Q |
319 |
actgtgaaaatatttgtgttattattttatgaatgggataaccgtgtgcacgtgctagagactgatattttgatccaaattgacggcaaagaatccctaa |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13412386 |
actgtgaaaatatttgtgttattattttatgaatgggataaccgtgtgcacgtgctagagactgatattttgatccaaattgacggcaaagaatccctaa |
13412485 |
T |
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| Q |
419 |
aattgctaac |
428 |
Q |
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| T |
13412486 |
aattgttaac |
13412495 |
T |
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