View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11868_low_3 (Length: 287)

Name: NF11868_low_3
Description: NF11868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11868_low_3
NF11868_low_3
[»] chr8 (6 HSPs)
chr8 (15-276)||(41930912-41931173)
chr8 (149-210)||(4050438-4050500)
chr8 (169-243)||(45371069-45371143)
chr8 (152-224)||(1310129-1310201)
chr8 (151-243)||(1318609-1318701)
chr8 (147-195)||(18735797-18735845)
[»] chr1 (7 HSPs)
chr1 (151-247)||(6025937-6026033)
chr1 (153-210)||(15956878-15956935)
chr1 (149-206)||(46937566-46937623)
chr1 (149-225)||(47847979-47848054)
chr1 (151-201)||(13277625-13277675)
chr1 (180-241)||(15255191-15255252)
chr1 (148-204)||(35655430-35655486)
[»] chr4 (6 HSPs)
chr4 (152-210)||(27722416-27722474)
chr4 (152-208)||(4145259-4145315)
chr4 (151-206)||(33714235-33714290)
chr4 (149-206)||(26275548-26275605)
chr4 (153-210)||(37579594-37579651)
chr4 (170-210)||(207488-207528)
[»] chr2 (4 HSPs)
chr2 (149-206)||(39597573-39597630)
chr2 (152-232)||(28804335-28804415)
chr2 (149-208)||(41012701-41012760)
chr2 (149-207)||(29378505-29378563)
[»] chr7 (9 HSPs)
chr7 (149-205)||(37233413-37233469)
chr7 (152-241)||(2219498-2219587)
chr7 (169-232)||(24942511-24942574)
chr7 (169-232)||(24945623-24945686)
chr7 (152-223)||(38622870-38622941)
chr7 (149-203)||(29440324-29440378)
chr7 (185-218)||(21450951-21450984)
chr7 (171-235)||(28989994-28990058)
chr7 (151-223)||(29000465-29000540)
[»] chr6 (6 HSPs)
chr6 (144-210)||(19390935-19391001)
chr6 (149-204)||(3736988-3737043)
chr6 (155-210)||(5730197-5730252)
chr6 (185-247)||(4381951-4382013)
chr6 (192-240)||(27832843-27832891)
chr6 (151-203)||(29165841-29165893)
[»] chr3 (7 HSPs)
chr3 (172-210)||(14794298-14794336)
chr3 (153-210)||(2990986-2991043)
chr3 (152-201)||(29208264-29208313)
chr3 (152-206)||(162902-162956)
chr3 (149-206)||(54084308-54084365)
chr3 (170-210)||(38884080-38884120)
chr3 (146-210)||(54838575-54838639)
[»] chr5 (3 HSPs)
chr5 (149-201)||(39647140-39647192)
chr5 (144-210)||(11257719-11257785)
chr5 (179-231)||(631474-631526)


Alignment Details
Target: chr8 (Bit Score: 262; Significance: 1e-146; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 15 - 276
Target Start/End: Original strand, 41930912 - 41931173
Alignment:
Q  15 aggtatgatatgtatacatctttctcatgcatctgcaagcagagtcaaccgatagcggaactttcattaccaaaaaatgaaatagcattttaggagcaat 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41930912 aggtatgatatgtatacatctttctcatgcatctgcaagcagagtcaaccgatagcggaactttcattaccaaaaaatgaaatagcattttaggagcaat 41931011  T
Q  115 ttagctttgttgaatagcagcacacaatggtgttgcggaatttgaataaattgttattgttccacgataagctatttagtacaaaatattgtcaaacaac 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41931012 ttagctttgttgaatagcagcacacaatggtgttgcggaatttgaataaattgttattgttccacgataagctatttagtacaaaatattgtcaaacaac 41931111  T
Q  215 ggctgtagcggcactatagcattgttgtgcagctggatttgatcaaactgcttaagattcat 276  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41931112 ggctgtagcggcactatagcattgttgtgcagctggatttgatcaaactgcttaagattcat 41931173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 210
Target Start/End: Original strand, 4050438 - 4050500
Alignment:
Q  149 gcggaatttgaataaatt-gttattgttccacgataagctatttagtacaaaatattgtcaaa 210  Q
    |||||||||||| ||| | ||||||||| ||| ||| |||||||||| |||||||||||||||    
T  4050438 gcggaatttgaaaaaaatcgttattgtttcaccatatgctatttagtccaaaatattgtcaaa 4050500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 243
Target Start/End: Complemental strand, 45371143 - 45371069
Alignment:
Q  169 tattgttccacgataagctatttagtacaaaatattgtcaaacaacggctgtagcggcactatagcattgttgtg 243  Q
    ||||||||| | ||| ||||||||||||||||| |||||||| | |  || || ||||||||||||| |||||||    
T  45371143 tattgttccgcaatatgctatttagtacaaaatgttgtcaaatagctactataacggcactatagcactgttgtg 45371069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 224
Target Start/End: Original strand, 1310129 - 1310201
Alignment:
Q  152 gaatttgaataaattgttattgttccacgataagctatttagtacaaaatattgtcaaacaacggctgtagcg 224  Q
    ||||||||| |||||| |||||||||  ||||  ||||||||||||| ||||||| ||| | ||||| |||||    
T  1310129 gaatttgaacaaattgctattgttccttgatacactatttagtacaatatattgtgaaatagcggctatagcg 1310201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 151 - 243
Target Start/End: Complemental strand, 1318701 - 1318609
Alignment:
Q  151 ggaatttgaataaattgttattgttccacgataagctatttagtacaaaatattgtcaaacaacggctgtagcggcactatagcattgttgtg 243  Q
    |||||||||| || |  |||||||||| | ||||||||||||| || | || |||||||| | | ||||||| | | ||||||||||||||||    
T  1318701 ggaatttgaacaagtccttattgttccgcaataagctatttagaactacatgttgtcaaatagcagctgtagtgacgctatagcattgttgtg 1318609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 195
Target Start/End: Original strand, 18735797 - 18735845
Alignment:
Q  147 ttgcggaatttgaataaattgttattgttccacgataagctatttagta 195  Q
    |||||||||||||| ||||||||||| ||||||| ||  ||||||||||    
T  18735797 ttgcggaatttgaacaaattgttatttttccacggtactctatttagta 18735845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 151 - 247
Target Start/End: Complemental strand, 6026033 - 6025937
Alignment:
Q  151 ggaatttgaataaattgttattgttccacgataagctatttagtacaaaatattgtcaaacaacggctgtagcggcactatagcattgttgtgcagc 247  Q
    |||||||||| |||| ||||||||||| ||||| ||||||||||||||||| |||||||| |  |||| |||| || |||||||| ||||| |||||    
T  6026033 ggaatttgaacaaatagttattgttccgcgatatgctatttagtacaaaatgttgtcaaatagtggctatagcagcgctatagcactgttgggcagc 6025937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 153 - 210
Target Start/End: Original strand, 15956878 - 15956935
Alignment:
Q  153 aatttgaataaattgttattgttccacgataagctatttagtacaaaatattgtcaaa 210  Q
    |||||||| |||||||||||||||| | ||| ||||||||||||||| | ||||||||    
T  15956878 aatttgaacaaattgttattgttccgccatacgctatttagtacaaagtgttgtcaaa 15956935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 149 - 206
Target Start/End: Original strand, 46937566 - 46937623
Alignment:
Q  149 gcggaatttgaataaattgttattgttccacgataagctatttagtacaaaatattgt 206  Q
    |||||||||||| ||| || ||||||||| ||||  ||||||||||||||||||||||    
T  46937566 gcggaatttgaacaaagtgctattgttccgcgatgcgctatttagtacaaaatattgt 46937623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 225
Target Start/End: Complemental strand, 47848054 - 47847979
Alignment:
Q  149 gcggaatttgaataaattgttattgttccacgataagctatttagtacaaaatattgtcaaacaacggctgtagcgg 225  Q
    |||||||||||| |||| | ||||||||||||||| || |||| ||||||||| |||||||| | ||||| ||||||    
T  47848054 gcggaatttgaacaaatcgctattgttccacgatatgccattt-gtacaaaatgttgtcaaatagcggctatagcgg 47847979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 201
Target Start/End: Original strand, 13277625 - 13277675
Alignment:
Q  151 ggaatttgaataaattgttattgttccacgataagctatttagtacaaaat 201  Q
    |||||||||  |||| ||||||||||||| ||| |||||||||||||||||    
T  13277625 ggaatttgagcaaatcgttattgttccactatacgctatttagtacaaaat 13277675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 241
Target Start/End: Complemental strand, 15255252 - 15255191
Alignment:
Q  180 gataagctatttagtacaaaatattgtcaaacaacggctgtagcggcactatagcattgttg 241  Q
    |||| |||||||||| || |||||||| |||||  |||| |||||||||||||||| |||||    
T  15255252 gatatgctatttagtgcataatattgtgaaacagtggctatagcggcactatagcaatgttg 15255191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 204
Target Start/End: Complemental strand, 35655486 - 35655430
Alignment:
Q  148 tgcggaatttgaataaattgttattgttccacgataagctatttagtacaaaatatt 204  Q
    ||||||||||||| ||||||||||  |||| |  || ||||||||||||||||||||    
T  35655486 tgcggaatttgaacaaattgttataattccgcactatgctatttagtacaaaatatt 35655430  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 152 - 210
Target Start/End: Complemental strand, 27722474 - 27722416
Alignment:
Q  152 gaatttgaataaattgttattgttccacgataagctatttagtacaaaatattgtcaaa 210  Q
    |||||||||  ||||| ||||||||||||||| |||||| |||||||||||||||||||    
T  27722474 gaatttgaactaattgctattgttccacgatatgctattaagtacaaaatattgtcaaa 27722416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 152 - 208
Target Start/End: Complemental strand, 4145315 - 4145259
Alignment:
Q  152 gaatttgaataaattgttattgttccacgataagctatttagtacaaaatattgtca 208  Q
    ||||||||| |||||||||||||||||| ||| |||||| |||||||||| ||||||    
T  4145315 gaatttgaacaaattgttattgttccaccatacgctattcagtacaaaatgttgtca 4145259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 151 - 206
Target Start/End: Complemental strand, 33714290 - 33714235
Alignment:
Q  151 ggaatttgaataaattgttattgttccacgataagctatttagtacaaaatattgt 206  Q
    |||||||||| |||| | | |||||||||||||||| |||||||||||||||||||    
T  33714290 ggaatttgaacaaatcgctgttgttccacgataagccatttagtacaaaatattgt 33714235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 206
Target Start/End: Complemental strand, 26275605 - 26275548
Alignment:
Q  149 gcggaatttgaataaattgttattgttccacgataagctatttagtacaaaatattgt 206  Q
    |||| ||||||| |||| | ||||||||||  ||| ||||||||||||||||||||||    
T  26275605 gcgggatttgaacaaatcgctattgttccaaaatacgctatttagtacaaaatattgt 26275548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 210
Target Start/End: Complemental strand, 37579651 - 37579594
Alignment:
Q  153 aatttgaataaattgttattgttccacgataagctatttagtacaaaatattgtcaaa 210  Q
    ||||| ||||||| ||||||||||| ||||| |||||||||||| || | ||||||||    
T  37579651 aattttaataaatcgttattgttccgcgatatgctatttagtactaagtgttgtcaaa 37579594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 170 - 210
Target Start/End: Original strand, 207488 - 207528
Alignment:
Q  170 attgttccacgataagctatttagtacaaaatattgtcaaa 210  Q
    |||||||| ||||| ||||||||||||||| ||||||||||    
T  207488 attgttccgcgatatgctatttagtacaaagtattgtcaaa 207528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 149 - 206
Target Start/End: Original strand, 39597573 - 39597630
Alignment:
Q  149 gcggaatttgaataaattgttattgttccacgataagctatttagtacaaaatattgt 206  Q
    ||||||||| ||||||| | ||||||||| ||||| ||||||||||||||||||||||    
T  39597573 gcggaatttaaataaatcgctattgttccgcgatacgctatttagtacaaaatattgt 39597630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 152 - 232
Target Start/End: Original strand, 28804335 - 28804415
Alignment:
Q  152 gaatttgaataaattgttattgttccacgataagctatttagtacaaaatattgtcaaacaacggctgtagcggcactata 232  Q
    ||||||||| |||| | ||||||| ||  ||||||||||||||||||| |||||||||| ||||||| ||| | |||||||    
T  28804335 gaatttgaacaaatcgctattgtttcagaataagctatttagtacaaagtattgtcaaataacggctatagtgacactata 28804415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 149 - 208
Target Start/End: Original strand, 41012701 - 41012760
Alignment:
Q  149 gcggaatttgaataaattgttattgttccacgataagctatttagtacaaaatattgtca 208  Q
    |||| ||||||| |||||||||||||||| |||||  ||||||||| |||| ||||||||    
T  41012701 gcggtatttgaacaaattgttattgttcctcgatacactatttagtgcaaattattgtca 41012760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 207
Target Start/End: Original strand, 29378505 - 29378563
Alignment:
Q  149 gcggaatttgaataaattgttattgttccacgataagctatttagtacaaaatattgtc 207  Q
    |||||||||||| |||||| ||||||||  ||||| ||||||| ||||||| |||||||    
T  29378505 gcggaatttgaacaaattgatattgttctgcgatacgctattttgtacaaagtattgtc 29378563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 149 - 205
Target Start/End: Original strand, 37233413 - 37233469
Alignment:
Q  149 gcggaatttgaataaattgttattgttccacgataagctatttagtacaaaatattg 205  Q
    |||||||||||| ||||||||||||||| ||||||  ||||||| ||||||||||||    
T  37233413 gcggaatttgaacaaattgttattgttctacgatacactatttaatacaaaatattg 37233469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 152 - 241
Target Start/End: Complemental strand, 2219587 - 2219498
Alignment:
Q  152 gaatttgaataaattgttattgttccacgataagctatttagtacaaaatattgtcaaacaacggctgtagcggcactatagcattgttg 241  Q
    ||||||||| | || ||||||||||   |||| |||||||||||||||||||||||||| | ||| | || |||  ||||||||||||||    
T  2219587 gaatttgaacatatcgttattgttctctgatatgctatttagtacaaaatattgtcaaatagcggttataacggtgctatagcattgttg 2219498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 169 - 232
Target Start/End: Original strand, 24942511 - 24942574
Alignment:
Q  169 tattgttccacgataagctatttagtacaaaatattgtcaaacaacggctgtagcggcactata 232  Q
    |||||||||| |||| |||| |||||||||||| |||||||| | | ||||||||||| |||||    
T  24942511 tattgttccatgatacgctaattagtacaaaatgttgtcaaatagcagctgtagcggcgctata 24942574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 169 - 232
Target Start/End: Original strand, 24945623 - 24945686
Alignment:
Q  169 tattgttccacgataagctatttagtacaaaatattgtcaaacaacggctgtagcggcactata 232  Q
    ||||||||||||||| ||||  ||| ||||||| |||||||| | ||||||||||||| |||||    
T  24945623 tattgttccacgatacgctaactagcacaaaatgttgtcaaatagcggctgtagcggcgctata 24945686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 152 - 223
Target Start/End: Complemental strand, 38622941 - 38622870
Alignment:
Q  152 gaatttgaataaattgttattgttccacgataagctatttagtacaaaatattgtcaaacaacggctgtagc 223  Q
    |||||||||||||| | |||||||||| ||||  |||||||| ||||||| |||||||| | ||||| ||||    
T  38622941 gaatttgaataaatcgatattgttccatgatacactatttagcacaaaatgttgtcaaatagcggctatagc 38622870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 203
Target Start/End: Complemental strand, 29440378 - 29440324
Alignment:
Q  149 gcggaatttgaataaattgttattgttccacgataagctatttagtacaaaatat 203  Q
    ||||| |||||| ||| || ||||||||||||||| | |||||||||||||||||    
T  29440378 gcggagtttgaaaaaactgctattgttccacgatatgttatttagtacaaaatat 29440324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 218
Target Start/End: Complemental strand, 21450984 - 21450951
Alignment:
Q  185 gctatttagtacaaaatattgtcaaacaacggct 218  Q
    ||||||||||||||| ||||||||||||||||||    
T  21450984 gctatttagtacaaactattgtcaaacaacggct 21450951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 235
Target Start/End: Complemental strand, 28990058 - 28989994
Alignment:
Q  171 ttgttccacgataagctatttagtacaaaatattgtcaaacaacggctgtagcggcactatagca 235  Q
    ||||||||| ||  ||||||||||||||||||||||  |  | |||||||||| |||||||||||    
T  28990058 ttgttccactatttgctatttagtacaaaatattgtggataagcggctgtagcagcactatagca 28989994  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 151 - 223
Target Start/End: Complemental strand, 29000540 - 29000465
Alignment:
Q  151 ggaatttgaataaattgttattgttccacga-taagctatt--tagtacaaaatattgtcaaacaacggctgtagc 223  Q
    |||||||||| |||  | ||||||||||||| || ||||||  |||||||||||||||| ||| ||||||||||||    
T  29000540 ggaatttgaacaaacagctattgttccacgaatatgctattaatagtacaaaatattgtgaaataacggctgtagc 29000465  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 144 - 210
Target Start/End: Original strand, 19390935 - 19391001
Alignment:
Q  144 gtgttgcggaatttgaataaattgttattgttccacgataagctatttagtacaaaatattgtcaaa 210  Q
    |||| |||||||||||  |||  ||| ||||||||| ||||||||||||||||||| ||||||||||    
T  19390935 gtgtagcggaatttgaccaaaccgttgttgttccacaataagctatttagtacaaagtattgtcaaa 19391001  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 149 - 204
Target Start/End: Original strand, 3736988 - 3737043
Alignment:
Q  149 gcggaatttgaataaattgttattgttccacgataagctatttagtacaaaatatt 204  Q
    |||||||||||| |||||||||||||||  ||||| |||||| |||||||| ||||    
T  3736988 gcggaatttgaacaaattgttattgttctgcgatatgctattcagtacaaactatt 3737043  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 155 - 210
Target Start/End: Complemental strand, 5730252 - 5730197
Alignment:
Q  155 tttgaataaattgttattgttccacgataagctatttagtacaaaatattgtcaaa 210  Q
    ||||||||||| | | |||||||| |||| ||||||||||||||||| ||||||||    
T  5730252 tttgaataaatcgctcttgttccatgatatgctatttagtacaaaatcttgtcaaa 5730197  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 247
Target Start/End: Complemental strand, 4382013 - 4381951
Alignment:
Q  185 gctatttagtacaaaatattgtcaaacaacggctgtagcggcactatagcattgttgtgcagc 247  Q
    ||||||||||||||||| |||||||| || |||| ||| |||  || ||||||||||||||||    
T  4382013 gctatttagtacaaaatgttgtcaaataaaggctatagtggctgtagagcattgttgtgcagc 4381951  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 27832843 - 27832891
Alignment:
Q  192 agtacaaaatattgtcaaacaacggctgtagcggcactatagcattgtt 240  Q
    |||||||||||||||| || ||||||| |||| ||||||||| ||||||    
T  27832843 agtacaaaatattgtcgaataacggctatagcagcactatagtattgtt 27832891  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 151 - 203
Target Start/End: Original strand, 29165841 - 29165893
Alignment:
Q  151 ggaatttgaataaattgttattgttccacgataagctatttagtacaaaatat 203  Q
    |||||||||| ||||||||||||||||  ||||  ||||||| ||||||||||    
T  29165841 ggaatttgaacaaattgttattgttcctagatactctatttaatacaaaatat 29165893  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 172 - 210
Target Start/End: Complemental strand, 14794336 - 14794298
Alignment:
Q  172 tgttccacgataagctatttagtacaaaatattgtcaaa 210  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  14794336 tgttccacgatacgctatttagtacaaaatattgtcaaa 14794298  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 153 - 210
Target Start/End: Complemental strand, 2991043 - 2990986
Alignment:
Q  153 aatttgaataaattgttattgttccacgataagctatttagtacaaaatattgtcaaa 210  Q
    |||||||| |||||  | ||||||||||||| ||||||||||||||||| ||||||||    
T  2991043 aatttgaacaaatttcttttgttccacgatacgctatttagtacaaaatgttgtcaaa 2990986  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 152 - 201
Target Start/End: Original strand, 29208264 - 29208313
Alignment:
Q  152 gaatttgaataaattgttattgttccacgataagctatttagtacaaaat 201  Q
    ||||||||| |||| ||||||||||||||||| ||| |||||||||||||    
T  29208264 gaatttgaacaaatcgttattgttccacgatacgctgtttagtacaaaat 29208313  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 206
Target Start/End: Original strand, 162902 - 162956
Alignment:
Q  152 gaatttgaataaattgttattgttccacgataagctatttagtacaaaatattgt 206  Q
    ||||||||| ||||||||||| |||  ||||  ||||||||||||||||||||||    
T  162902 gaatttgaacaaattgttattattctgcgatgcgctatttagtacaaaatattgt 162956  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 206
Target Start/End: Original strand, 54084308 - 54084365
Alignment:
Q  149 gcggaatttgaataaattgttattgttccacgataagctatttagtacaaaatattgt 206  Q
    |||||||||||| ||| || || |||||||| ||| |||||||||| |||||||||||    
T  54084308 gcggaatttgaacaaactgataatgttccacaatacgctatttagtgcaaaatattgt 54084365  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 170 - 210
Target Start/End: Complemental strand, 38884120 - 38884080
Alignment:
Q  170 attgttccacgataagctatttagtacaaaatattgtcaaa 210  Q
    |||||||||| ||| ||||||| ||||||||||||||||||    
T  38884120 attgttccacaatatgctatttggtacaaaatattgtcaaa 38884080  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 210
Target Start/End: Original strand, 54838575 - 54838639
Alignment:
Q  146 gttgcggaatttgaataaattgttattgttccacgataagctatttagtacaaaatattgtcaaa 210  Q
    |||| |||||||||  |||||||| |||||||||| |  || |||||||||||||| ||||||||    
T  54838575 gttggggaatttgagcaaattgtttttgttccacggtgtgcaatttagtacaaaatgttgtcaaa 54838639  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 201
Target Start/End: Complemental strand, 39647192 - 39647140
Alignment:
Q  149 gcggaatttgaataaattgttattgttccacgataagctatttagtacaaaat 201  Q
    |||||||||||| |||| ||||||||||  ||||| |||||||||||||||||    
T  39647192 gcggaatttgaacaaatcgttattgttctgcgatatgctatttagtacaaaat 39647140  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 210
Target Start/End: Original strand, 11257719 - 11257785
Alignment:
Q  144 gtgttgcggaatttgaataaattgttattgttccacgataagctatttagtacaaaatattgtcaaa 210  Q
    |||| ||||||| |||| |||| | |||||||  |||||| ||||||||||||||||| ||||||||    
T  11257719 gtgtagcggaatatgaacaaatcgctattgttatacgatatgctatttagtacaaaatgttgtcaaa 11257785  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 231
Target Start/End: Complemental strand, 631526 - 631474
Alignment:
Q  179 cgataagctatttagtacaaaatattgtcaaacaacggctgtagcggcactat 231  Q
    ||||| |||||||||||||||||||||||| | | ||||| |||| |||||||    
T  631526 cgatacgctatttagtacaaaatattgtcatatagcggctatagctgcactat 631474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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