View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11868_low_4 (Length: 238)
Name: NF11868_low_4
Description: NF11868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11868_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 12600342 - 12600115
Alignment:
| Q |
1 |
gtttcttcatcctttttaaagaatcagtactgacgaaaagtcaaatgctttgcaaacttcaaaaccaagtcatttacaggttctgtttcctacaaaaaca |
100 |
Q |
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| T |
12600342 |
gtttcttcatcctttttaaagaatcagtactgacgaaaagtcaaatgctttgcaaacttcaaaaccaagtcatttacaggttctgtttcctacaaaaaca |
12600243 |
T |
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| Q |
101 |
tagaagtgtaaagcgaaaccatttttcgcttccttgctagagacatgggaggagaaattgtccgtggaagttcaacgaaagagcttggtaaacgaagtag |
200 |
Q |
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| T |
12600242 |
tagaagtgtaaagcgaaacca-ttttcgcttccttgctagagacatgggaggagaaattgtccgtggaagttcaacgaaagagcttggtaaatgaagtag |
12600144 |
T |
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| Q |
201 |
attgtggtatcgtgaggatgttcatgatg |
229 |
Q |
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|||||||||||||||||||||||| |||| |
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| T |
12600143 |
attgtggtatcgtgaggatgttcacgatg |
12600115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 15806361 - 15806502
Alignment:
| Q |
1 |
gtttcttcatcctttttaaagaatcagtactgacgaaaagtcaaatgctttgcaaacttcaaaaccaagtcatttacaggttctgtttcctacaaaaaca |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
15806361 |
gtttcttcatcctttttaaagaatcagtactgacgaaaagttaaatgctttgcaaacttcaaagccaagtcatttacaggttctgtttcctacaaaaaca |
15806460 |
T |
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| Q |
101 |
tagaagtgtaaagcgaaaccatttttcgcttccttgctagaga |
143 |
Q |
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| T |
15806461 |
tagaagtgtaaagtgaaacca-ttttcgcttccttgctagaga |
15806502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 6e-21; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 3387971 - 3387849
Alignment:
| Q |
1 |
gtttcttcatcctttttaaagaatcagtactgacgaaaagtcaaatgctttgcaaacttcaaaaccaagtcatttacaggttctgtttcctacaaaaaca |
100 |
Q |
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||||||||||||| ||||||||||||||||||| ||||||| | | || ||||| ||||||||||||||||| ||||| |||||| |||| ||||||| |
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| T |
3387971 |
gtttcttcatcctctttaaagaatcagtactgaagaaaagtttacttctctgcaa-cttcaaaaccaagtcatctacagtttctgtcccctataaaaaca |
3387873 |
T |
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| Q |
101 |
tagaagtgtaaagcgaaaccattt |
124 |
Q |
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|||| |||| |||||||||||| |
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| T |
3387872 |
aagaaaagtaaggcgaaaccattt |
3387849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 227
Target Start/End: Complemental strand, 3326188 - 3326100
Alignment:
| Q |
139 |
agagacatgggaggagaaattgtccgtggaagttcaacgaaagagcttggtaaacgaagtagattgtggtatcgtgaggatgttcatga |
227 |
Q |
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| T |
3326188 |
agagacatgggaagagaaattattcgtgaaagttctgcaaaagagcctgggaagcgtagtagattgtggtttcatgaggatgtgcatga |
3326100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 143
Target Start/End: Original strand, 3321353 - 3321493
Alignment:
| Q |
2 |
tttcttcatcctttttaaagaatcagtactgacgaaaagtcaaatgctttgcaaacttcaaaaccaagtcatttacaggttctgttt-cctacaaaaaca |
100 |
Q |
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|||||||||||| ||||||||||| ||| || |||||| | | || ||||| ||||||||||||||||| ||||| |||||||| |||| ||||||| |
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| T |
3321353 |
tttcttcatcctctttaaagaatcggtaacgaaaaaaagtttacttctctgcaa-cttcaaaaccaagtcatctacagtttctgtttccctataaaaaca |
3321451 |
T |
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| Q |
101 |
tagaagtgtaaagcgaaaccatttttcgcttccttgctagaga |
143 |
Q |
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|||| |||| | ||| ||| ||| | ||||||||||||||| |
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| T |
3321452 |
aagaaaagtaaggtgaaccca-tttccacttccttgctagaga |
3321493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 229
Target Start/End: Complemental strand, 3408525 - 3408435
Alignment:
| Q |
139 |
agagacatgggaggagaaattgtccgtggaagttcaacgaaagagcttggtaaacgaagtagattgtggtatcgtgaggatgttcatgatg |
229 |
Q |
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|||||||||||| ||||||||||||||| ||||||| | | ||| | ||| || || ||| ||||||||| || |||||||| ||||||| |
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| T |
3408525 |
agagacatgggaagagaaattgtccgtgaaagttcagcaagagaacctgggaagcgtagtcgattgtggtttcacgaggatgtacatgatg |
3408435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 221
Target Start/End: Original strand, 3313723 - 3313804
Alignment:
| Q |
140 |
gagacatgggaggagaaattgtccgtggaagttcaacgaaagagcttggtaaacgaagtagattgtggtatcgtgaggatgt |
221 |
Q |
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| T |
3313723 |
gagacatgggacgagaaattgtccgtgaaagttcacctgaggagcctgaaaagcgtagtcgattgtggtatcatgaggatgt |
3313804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 176
Target Start/End: Complemental strand, 6907055 - 6907018
Alignment:
| Q |
139 |
agagacatgggaggagaaattgtccgtggaagttcaac |
176 |
Q |
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|||||||||||| |||||||||| |||||||||||||| |
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| T |
6907055 |
agagacatgggaagagaaattgttcgtggaagttcaac |
6907018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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