View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11869_high_1 (Length: 896)

Name: NF11869_high_1
Description: NF11869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11869_high_1
NF11869_high_1
[»] chr1 (1 HSPs)
chr1 (7-880)||(28263633-28264506)


Alignment Details
Target: chr1 (Bit Score: 793; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 793; E-Value: 0
Query Start/End: Original strand, 7 - 880
Target Start/End: Complemental strand, 28264506 - 28263633
Alignment:
Q  7 gttgaaaaaaccagttctaccgccgttggtcgtgcaagcatcttaccgtccgccaaccacgaagagcatttcgtcgacaggatcgccttcgcgaactatg 106  Q
    |||||||||||||||||| || |||||||||||||||| |||| | ||||| | ||| | ||||||||||||||||||||||||||||||||||||||||    
T  28264506 gttgaaaaaaccagttcttccaccgttggtcgtgcaagaatctaaacgtcctcgaacgatgaagagcatttcgtcgacaggatcgccttcgcgaactatg 28264407  T
Q  107 caagttcctggagtgcatagagttggttttagcctttcacatattgcatctaacatcctgtcatccatctgatcgaatagtggtacctgtgcaaatagtt 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28264406 caagttcctggagtgcatagagttggttttagcctttcacatattgcatctaacatcctgtcatccatctgatcgaatagtggtacctgtgcaaatagtt 28264307  T
Q  207 tccagttagtacttcattcttattttgtatacttgtttcccaagcaacatgtcaaaaacatnnnnnnntgtcgcatgcatggtttctaaataaaaggtat 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||    
T  28264306 tccagttagtacttcattcttattttgtatacttgtttcccaagcaacatgtcaaaaacataaaaaaatgtcgcatgcatggtttctaaataaaaggtat 28264207  T
Q  307 gtgattgccaagagtggagacatcaagattctttatttatcaatgatcacatttatgcaaccaaaattgcgatcgcattgatcaaatttgaccatgaatt 406  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  28264206 gtgattgtcaagagtggagacatcaagattctttatttatcaatgatcacatttatgcaaccaaaattgtgatcgcattgatcaaatttgaccatgaatt 28264107  T
Q  407 tttggaatatcagagattgagaccacaattgttactgtgagcgtgattttaaaagttaaaatcttatttgctcgtagagtagtgcggaaacagattccca 506  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28264106 tttggaatatcagagattgagaccacaattgttactgtgagcgtgattttaaaagttaaaatcttatttgctcgtagagtagtgcggaaacagattccca 28264007  T
Q  507 acataaccgtctaatctaaatcaattgtcgagatcgtttaaaattgacatagtgaatgtgtaatctaagtcgtctgatttcacaatcgcaaactgcgaaa 606  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  28264006 acataaccgtctaatctaaatcaattgtcgagatcgtttaaaattgacatagtgaatgtgtaatctaagtcgtttgatttcacaatcgcaaactgcgaaa 28263907  T
Q  607 taaaaagcacatgcagatgcaaagatgaaaacaaagatttacttacctgtctaactagattaaggcaaaggtggcgtttaatgtcacgtcttagatcaac 706  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  28263906 taaaaagcacatacagatgcaaagatgaaaacaaagatttacttacctgtctaactagattaaggcaaaggtggcgtttaatgtctcgtcttagatcaac 28263807  T
Q  707 aggaaggtctctaagaattgcttcctcgtcaactccacgagtagctacccatctaaattggtcatggcgtcgaacattttccttcaggtaacgagggagc 806  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  28263806 aggaaggtctctaagaattgcttcctcgtcaactccacgagtagctacccatctaaattggtcatggcgtcgaacattttccttcaggtaatgagggagc 28263707  T
Q  807 tgtctgtgatgcatccatctttctgtatccgtccttctgattcgccactcttccagccgtatagtggtggattg 880  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28263706 tgtctgtgatgcatccatctttctgtatccgtccttctgattcgccactcttccagccgtatagtggtggattg 28263633  T

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