View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11869_high_3 (Length: 598)
Name: NF11869_high_3
Description: NF11869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11869_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 29 - 581
Target Start/End: Original strand, 11663864 - 11664400
Alignment:
| Q |
29 |
gtaagtgttgcgtatcgatggaccgagtaatgaataaggtctgaaataaattttaagtggagaaactttttacaccacaaacatgactttgtgtggtttt |
128 |
Q |
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| T |
11663864 |
gtaagtgttgcgtatcgatggaccgagtaatgaataaggtcttaaataaattttaagtggagaaattttttacaccacaaacatgactttgtgtggtttt |
11663963 |
T |
|
| Q |
129 |
taagagattatgagtgagaaattttagagagactttcaatagaccttttataagcgagacttttttaatcccaaatcagttgtttaagcggtttgaccct |
228 |
Q |
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| T |
11663964 |
taagagaatgtgagtgagaaattttagagaaactttaaatagaccttttataagcgagaattttttaatctcaaatcagttgtttaagtgatttgaccct |
11664063 |
T |
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| Q |
229 |
tagaccgaccctatcgataaaagtatcttagattttcttattgtatcacgaatataaaagctatgaactttacaaatacctttgaatttgatatcttgaa |
328 |
Q |
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| T |
11664064 |
tagaccgaccctatcaaaaagagtatcttagattttcttattgtatcgcaaatataaaaactataaactttacaaatacctttgaatttgatatcttgaa |
11664163 |
T |
|
| Q |
329 |
cagctttcctgtgcagatatttgacaacattcccacatctcatagcttcattaatcacctagtgttaacaannnnnnngataccacacatgagaaagaac |
428 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
11664164 |
cagctttcctgtgcagatatttgacaacattcccacatctcatagcttcattaatcacctagtgttaacaatttttttgataccacacatgagaaagaa- |
11664262 |
T |
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| Q |
429 |
aaaatcactaggaggcaaaatcatatattgctataaagtcacttaatatttaactggttcataatttcctacattttgagtgaactgcatttgcctatag |
528 |
Q |
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| T |
11664263 |
---------------caaaatcatatactgctataaagtcacttaatatttaattggtttataatttcctacattttgagtgaactgcatttgcctatag |
11664347 |
T |
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| Q |
529 |
tcctcccagttcaatagctccccttccaatttacttttccttatcacttgatg |
581 |
Q |
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| T |
11664348 |
tcctcccagttcaatagctccccttccaatttacttttccttatcacttgatg |
11664400 |
T |
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