View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11869_high_4 (Length: 483)
Name: NF11869_high_4
Description: NF11869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11869_high_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 9 - 467
Target Start/End: Complemental strand, 53956516 - 53956059
Alignment:
| Q |
9 |
gaagcaaaggttaggattatggaaaatttatgtgtctgtctacttttatttaggtgaataagattatgaaactaaaaacatccagaaataccttaaagaa |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
53956516 |
gaagcaaaggttaggattatggaaaatttatgt--ctgtctacttttatttaggtgaataagattatgaaactaaaaacatccagaaataccataaagaa |
53956419 |
T |
|
| Q |
109 |
ttaaagacagtaccgttagattaagcttaacttaatattgtgatcaaatattgctttactggtgtaattaaattttaatttttctgacctttggagcaat |
208 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53956418 |
ttaaagacagtaccgttaaattaagcttaacttaatattgtgatcaaatattgctttactggtgtaattaaattttaatttttctgacctttggagcaat |
53956319 |
T |
|
| Q |
209 |
gaatgattcttactcaaactacaggttgtactcatgatgaggaagcataatctgctaaaaagcaagaaggagtgtacgtga-ttannnnnnnatttccta |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||| |
|
|
| T |
53956318 |
gaatgattcttactcaaactacaggttgtactcatgatgaggaagcataatctgctaaaaagcaagaaggagtgtacgtgatttttttttttattcccta |
53956219 |
T |
|
| Q |
308 |
ttcttttaattatttatgaaagcttagaatgcacgaataacttatatggtagtggttattattattataggtattgtaatgaatatgcatgcggagctgt |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53956218 |
ttcttttaattatttatgaaagcttagaatgcacgaataacttatatggtagtggttattattattataggtattgtaatgaatatgcatgcggagctgt |
53956119 |
T |
|
| Q |
408 |
acaaaggttcagaaaccgaggatgatacatgttatctgattgttttggcaacaagaaaag |
467 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53956118 |
ataaaggttcagaaaccgaggatgatacatgttatctgattgttttggcaacaagaaaag |
53956059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University