View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11869_high_5 (Length: 455)
Name: NF11869_high_5
Description: NF11869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11869_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 18 - 445
Target Start/End: Complemental strand, 35831816 - 35831389
Alignment:
| Q |
18 |
acttctatttggtgacaattatttttaagttttgaaaattaaataatttatgtttgaatagaatcacttaaaagcgaattgaacaatggaaacaaggtca |
117 |
Q |
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| T |
35831816 |
acttctatttggtgacaattatttttaagttt-gaaaattaaataatttacgtttgaatagaatcacttaaaagcgaattgaacaatggaaacgaggtca |
35831718 |
T |
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| Q |
118 |
annnnnnnnnnnnnnnn-ccatttaaggtccaaatactaacttgaaaattaaaaataattatactcgagaatatctaaatatggtaaatcgtgttcgaaa |
216 |
Q |
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| T |
35831717 |
atttttttttttttttttccatttaaggtccaaatactaacttgaaaattaaaaataattatactcgagaatatctaaatatggtaaatcgtgttcgaaa |
35831618 |
T |
|
| Q |
217 |
aagcgaatccaaacatgtacaaattgaaggcataaaatttgacaagctaagactagatagatacctagtttggttgacagggtaaatgagtatgggacca |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35831617 |
aagcgaatccaaacatgtacaaattgaaggcataaaatttgacaagctaagactagatagatacctagtttggttgacagggtaaatgagtatgggacca |
35831518 |
T |
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| Q |
317 |
ttacttgtgtccttgagaatattgccatacacttctttagcaaagacatgaatctcactccttgggatcagaaggttcagccaaggatggtgaacttccc |
416 |
Q |
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| T |
35831517 |
ttacttgtgtccttgagaatattgccaaacacttctttagcaaagtcatgaatctcactccttgggatcagaaggttcagccaaggatggtgaacttccc |
35831418 |
T |
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| Q |
417 |
ataagccttgtgctcttagcttcatctca |
445 |
Q |
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| T |
35831417 |
ataagccttgtgctcttagcttcttctca |
35831389 |
T |
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