View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11869_low_7 (Length: 380)
Name: NF11869_low_7
Description: NF11869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11869_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 346; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 11 - 364
Target Start/End: Complemental strand, 33310133 - 33309780
Alignment:
| Q |
11 |
caaaggtagcaaacagttttgcatactattttggtgaaatgttcaattttacactttattagcattaatatgcaaaagggtaatttagttgtactatata |
110 |
Q |
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| T |
33310133 |
caaaggtagcaaacagttttgcatactattttggtgaaatgttcaattttacactttattagcattaatatgcaaaagggtaatttagttgtactatata |
33310034 |
T |
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| Q |
111 |
ctgcagttaatacaatggaagaatgattctcacaatctacaagtgaaacgtgaagttctcaaatgcttgaaaatgataagcagtttaaataccgaggcag |
210 |
Q |
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| T |
33310033 |
ctgcagttaatacaatggaagaatgattctcacaatctacaagtgaaacgtgaagttctcaaatgcttgaaaatgatacgcagtttaaataccgaggcag |
33309934 |
T |
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| Q |
211 |
attccatctacgaactttacaatgaaaccgacgctactatgggacctggctctgtttggaatgacattgttctttctccttctagatcaaatgatgtgga |
310 |
Q |
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| T |
33309933 |
attccatctacgaactttacaatgaaaccgacgctactatgggacctggctctgtttggaatgacattgttctttctccttctaggtcaaatgatgtgga |
33309834 |
T |
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| Q |
311 |
aaagttaagggaatccattcagaaaatagaaaaaatcatcagaaaacaataact |
364 |
Q |
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| T |
33309833 |
aaagttaagggaatccattcagaaaatagaaaaaatcatcagaaaacaataact |
33309780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 342
Target Start/End: Complemental strand, 33301600 - 33301507
Alignment:
| Q |
249 |
atgggacctggctctgtttggaatgacattgttctttctccttctagatcaaatgatgtggaaaagttaagggaatccattcagaaaatagaaa |
342 |
Q |
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| T |
33301600 |
atggaacctggttctgtttggaatgactttgttttgtcaccttcaaggtcaagtgttcagaaagagttaagggaatccattcttaaaatagaaa |
33301507 |
T |
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