View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11870_high_11 (Length: 473)
Name: NF11870_high_11
Description: NF11870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11870_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 315; Significance: 1e-177; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 21 - 381
Target Start/End: Complemental strand, 30731699 - 30731350
Alignment:
| Q |
21 |
gaaaacgaaagaatctccaacattacattacataaaccccatatagttaaaggagacaccaacaccaccaagtactgtttatttcttctctttgatattg |
120 |
Q |
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| T |
30731699 |
gaaaacgaaagaatctccaacattacattacataaaccccatatagttaaaggagacaccaacaccaccaagtactgtttatttcttctctttgatattg |
30731600 |
T |
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| Q |
121 |
atgtcactgagtggtgcacatgtgtttcactgaattccaatcatgcaactttgagtggtccccttatataaagtaaacacatcacgtgactaccacagtt |
220 |
Q |
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| T |
30731599 |
atgtcactgagtggtgcacatgtgtttcactgaattccaatcatgcaactttgagtggtcccattatataaagtaaacacatcacgtgactaccacagtt |
30731500 |
T |
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| Q |
221 |
tgatatcaaaagcttaccacttatattctcccatcacattatccttcatcaatttcctattaaaatttcttaccattacattacaactttttgtcttttc |
320 |
Q |
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| T |
30731499 |
tgatagcaaaagcttaccacttatattctcccatcacattatccttcatc-----------aaaatttcttaccattacattacaactttttgtcttttc |
30731411 |
T |
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| Q |
321 |
tttttctacttaattattcttccttccaaattttagtagtaagaaatagggatattccaac |
381 |
Q |
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| T |
30731410 |
tttttctacttaattattcttccttccaaattttagtagtaagaaatagggatattccaac |
30731350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 419 - 455
Target Start/End: Complemental strand, 30731311 - 30731275
Alignment:
| Q |
419 |
tcaagaaagacaacataggatcatgtgaactagccat |
455 |
Q |
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| T |
30731311 |
tcaagaaagacaacataggatcatgtgaactagccat |
30731275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 135 - 182
Target Start/End: Complemental strand, 39030773 - 39030725
Alignment:
| Q |
135 |
tgcacatgtgtttcactgaattccaatcatgc-aactttgagtggtccc |
182 |
Q |
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| T |
39030773 |
tgcacatgtgtttccctgcattccaatcatgcaaactttgagtggtccc |
39030725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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