View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11870_high_12 (Length: 463)

Name: NF11870_high_12
Description: NF11870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11870_high_12
NF11870_high_12
[»] chr5 (8 HSPs)
chr5 (6-96)||(15063189-15063279)
chr5 (45-96)||(5048083-5048134)
chr5 (46-96)||(5046541-5046591)
chr5 (46-96)||(5047312-5047362)
chr5 (101-188)||(5663817-5663905)
chr5 (412-448)||(15063149-15063185)
chr5 (305-356)||(28800785-28800836)
chr5 (97-154)||(5046425-5046482)
[»] chr2 (3 HSPs)
chr2 (291-406)||(19251150-19251265)
chr2 (15-96)||(20978765-20978846)
chr2 (291-449)||(25290440-25290600)
[»] chr4 (10 HSPs)
chr4 (101-184)||(28787906-28787990)
chr4 (6-96)||(51246707-51246797)
chr4 (46-95)||(17525452-17525501)
chr4 (46-96)||(24853431-24853481)
chr4 (46-96)||(24856322-24856372)
chr4 (97-154)||(51246599-51246656)
chr4 (99-154)||(17525557-17525612)
chr4 (103-181)||(24853295-24853374)
chr4 (107-156)||(24856212-24856261)
chr4 (97-184)||(28786956-28787042)
[»] chr8 (1 HSPs)
chr8 (300-431)||(4282076-4282209)
[»] chr1 (3 HSPs)
chr1 (97-215)||(22056604-22056723)
chr1 (97-188)||(22055529-22055621)
chr1 (104-156)||(29374155-29374207)
[»] chr3 (4 HSPs)
chr3 (98-154)||(12739319-12739375)
chr3 (97-154)||(12738168-12738225)
chr3 (46-91)||(12738289-12738334)
chr3 (97-154)||(15023036-15023093)
[»] chr7 (1 HSPs)
chr7 (97-215)||(22622439-22622558)
[»] scaffold0406 (2 HSPs)
scaffold0406 (97-139)||(6272-6314)
scaffold0406 (6-96)||(6365-6455)


Alignment Details
Target: chr5 (Bit Score: 71; Significance: 6e-32; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 6 - 96
Target Start/End: Complemental strand, 15063279 - 15063189
Alignment:
Q  6 agtagcataggaccagaggacgcacattagcgatgagcatattgtaggaggtgagaatatgatatggtgaagcctttaatattattgacat 96  Q
    ||||| || |||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  15063279 agtagtatcggactagaggacgcacattagtgatgagcatattgtaggaggtgagaatatgatatggtgaagccttcaatattattgacat 15063189  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 45 - 96
Target Start/End: Complemental strand, 5048134 - 5048083
Alignment:
Q  45 tattgtaggaggtgagaatatgatatggtgaagcctttaatattattgacat 96  Q
    |||||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  5048134 tattgtaggaggagagaatatgatatggtgaagcctctaatattattgacat 5048083  T

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Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 46 - 96
Target Start/End: Complemental strand, 5046591 - 5046541
Alignment:
Q  46 attgtaggaggtgagaatatgatatggtgaagcctttaatattattgacat 96  Q
    ||||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  5046591 attgtaggaggagagaatatgatatggtgaagcctctaatattattgacat 5046541  T

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Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 46 - 96
Target Start/End: Complemental strand, 5047362 - 5047312
Alignment:
Q  46 attgtaggaggtgagaatatgatatggtgaagcctttaatattattgacat 96  Q
    ||||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  5047362 attgtaggaggagagaatatgatatggtgaagcctctaatattattgacat 5047312  T

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Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 101 - 188
Target Start/End: Original strand, 5663817 - 5663905
Alignment:
Q  101 ttgaagatgtttctagagctagaataatctaggcttttggtttccttttctacatt-cattattatatatatttctaggctacaattta 188  Q
    ||||||||||||||| | |||||| | ||||||| |||| ||||| ||||||||||  ||||||||| || ||||||||||||||||||    
T  5663817 ttgaagatgtttctaaaactagaagagtctaggcctttgttttccgtttctacattagattattatagatgtttctaggctacaattta 5663905  T

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Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 412 - 448
Target Start/End: Complemental strand, 15063185 - 15063149
Alignment:
Q  412 ctatttcggttatttggaagcatatgaatgagattat 448  Q
    |||||||||||||||||||||||||||||||||||||    
T  15063185 ctatttcggttatttggaagcatatgaatgagattat 15063149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 305 - 356
Target Start/End: Original strand, 28800785 - 28800836
Alignment:
Q  305 caatttaatttcttaatacctcgtaatctttttgttcattttgaattttggt 356  Q
    |||||||||||||||||||| | ||||||||||| ||| ||||||| |||||    
T  28800785 caatttaatttcttaataccacataatctttttgctcactttgaatgttggt 28800836  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 154
Target Start/End: Complemental strand, 5046482 - 5046425
Alignment:
Q  97 gtgcttgaagatgtttctagagctagaataatctaggcttttggtttccttttctaca 154  Q
    ||||||| ||||||||||| | |||||||||||||||| |||| || |||| ||||||    
T  5046482 gtgcttgtagatgtttctaaaactagaataatctaggcctttgtttgccttatctaca 5046425  T

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Target: chr2 (Bit Score: 64; Significance: 8e-28; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 291 - 406
Target Start/End: Complemental strand, 19251265 - 19251150
Alignment:
Q  291 tgatgagttggctacaatttaatttcttaatacctcgtaatctttttgttcattttgaattttggtttaatgtggcttcttctaagaaaattagtagggg 390  Q
    ||||||||||||| || |||||||||||||||| || |||||||||||||| |||||||| ||||||||| | |||| ||||||| |||||||| |||||    
T  19251265 tgatgagttggcttcagtttaatttcttaatacttcataatctttttgttcgttttgaatgttggtttaaggaggctacttctaataaaattagaagggg 19251166  T
Q  391 ttattgtttgatttgg 406  Q
    || || ||||||||||    
T  19251165 tttttatttgatttgg 19251150  T

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Target: chr2; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 15 - 96
Target Start/End: Original strand, 20978765 - 20978846
Alignment:
Q  15 ggaccagaggacgcacattagcgatgagcatattgtaggaggtgagaatatgatatggtgaagcctttaatattattgacat 96  Q
    |||| ||||||| |||||||| ||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||    
T  20978765 ggacaagaggacacacattagtgataagcatattgtaggaggagagaatatgatatggtgaagccttcaatattattgacat 20978846  T

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Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 291 - 449
Target Start/End: Original strand, 25290440 - 25290600
Alignment:
Q  291 tgatgagttggctacaatttaatttcttaatacctcgtaatctttttgttcattttgaattttggtttaatgtggcttcttctaagaaaattagtagggg 390  Q
    ||||| ||||| || ||||| | ||| ||||||| | |||||| | ||| |||||||||| |||||| |||| ||||  |||||||||| | || |||||    
T  25290440 tgatgtgttggttagaatttcacttcataataccccataatctctatgtacattttgaatgttggttaaatgaggctatttctaagaaattaagaagggg 25290539  T
Q  391 ttattgtttgatttggct--cgtctatttcggttatttggaagcatatgaatgagattatt 449  Q
     | |||||||||||||||  | |||||||  || ||||||||||| | |||||||||||||    
T  25290540 attttgtttgatttggcttgcctctatttgagtgatttggaagcaaaggaatgagattatt 25290600  T

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Target: chr4 (Bit Score: 49; Significance: 7e-19; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 101 - 184
Target Start/End: Complemental strand, 28787990 - 28787906
Alignment:
Q  101 ttgaagatgtttctagagctagaataatctaggcttttggtttccttttctacatt-cattattatatatatttctaggctacaa 184  Q
    ||||||||||||||||| |||||||||||||||| |||| ||||||||| ||||||  || |||||| |||||||||||||||||    
T  28787990 ttgaagatgtttctagaactagaataatctaggcctttgttttccttttgtacattagataattatagatatttctaggctacaa 28787906  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 6 - 96
Target Start/End: Complemental strand, 51246797 - 51246707
Alignment:
Q  6 agtagcataggaccagaggacgcacattagcgatgagcatattgtaggaggtgagaatatgatatggtgaagcctttaatattattgacat 96  Q
    ||||| || |||| ||||||| ||||||||  || |||  ||||||||||| ||||||||||| |||||||||||| ||||||||||||||    
T  51246797 agtagtatgggacaagaggacacacattaggaattagctcattgtaggaggagagaatatgatttggtgaagccttcaatattattgacat 51246707  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 46 - 95
Target Start/End: Original strand, 17525452 - 17525501
Alignment:
Q  46 attgtaggaggtgagaatatgatatggtgaagcctttaatattattgaca 95  Q
    ||||||||||| |||||||||||||||||||||||| |||||||||||||    
T  17525452 attgtaggaggagagaatatgatatggtgaagccttcaatattattgaca 17525501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 46 - 96
Target Start/End: Complemental strand, 24853481 - 24853431
Alignment:
Q  46 attgtaggaggtgagaatatgatatggtgaagcctttaatattattgacat 96  Q
    |||||||||||  ||||||||||||| ||||||||| ||||||||||||||    
T  24853481 attgtaggaggaaagaatatgatatgatgaagccttcaatattattgacat 24853431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 46 - 96
Target Start/End: Complemental strand, 24856372 - 24856322
Alignment:
Q  46 attgtaggaggtgagaatatgatatggtgaagcctttaatattattgacat 96  Q
    ||||||||||| ||||||||||||||||||| | || ||||||||||||||    
T  24856372 attgtaggaggagagaatatgatatggtgaaactttcaatattattgacat 24856322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 97 - 154
Target Start/End: Complemental strand, 51246656 - 51246599
Alignment:
Q  97 gtgcttgaagatgtttctagagctagaataatctaggcttttggtttccttttctaca 154  Q
    ||||||| ||||||||||||| |||||||||||||||| |||| || |||| ||||||    
T  51246656 gtgcttgtagatgtttctagaactagaataatctaggcctttgtttgccttatctaca 51246599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 99 - 154
Target Start/End: Original strand, 17525557 - 17525612
Alignment:
Q  99 gcttgaagatgtttctagagctagaataatctaggcttttggtttccttttctaca 154  Q
    ||||| ||||||||||||| |||||||||||||||| |||| || |||| ||||||    
T  17525557 gcttgtagatgtttctagaactagaataatctaggcctttgtttgccttatctaca 17525612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 103 - 181
Target Start/End: Complemental strand, 24853374 - 24853295
Alignment:
Q  103 gaagatgtttctagagctagaataatctaggcttttggtttccttttctacatt-cattattatatatatttctaggcta 181  Q
    |||||||||| |||| |||||||||| ||||| |||| || |||||||||||||  ||||||||| || ||||| |||||    
T  24853374 gaagatgtttttagaactagaataatttaggcctttgtttgccttttctacattagattattatagatgtttcttggcta 24853295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 107 - 156
Target Start/End: Complemental strand, 24856261 - 24856212
Alignment:
Q  107 atgtttctagagctagaataatctaggcttttggtttccttttctacatt 156  Q
    ||||||||||| |||||||||||||||| |||| || ||||| |||||||    
T  24856261 atgtttctagaactagaataatctaggcctttgtttgcctttcctacatt 24856212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 184
Target Start/End: Complemental strand, 28787042 - 28786956
Alignment:
Q  97 gtgcttgaagatgtttctagagctagaataatctaggcttttggtttccttttctacat-tcattattatatatatttctaggctacaa 184  Q
    ||||||||||||||||||||| ||  |||||| ||||| ||||  ||||||||||||||   || |||||| || ||||||||||||||    
T  28787042 gtgcttgaagatgtttctagaact--aataatttaggcctttgtattccttttctacataagataattatagatgtttctaggctacaa 28786956  T

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Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 300 - 431
Target Start/End: Original strand, 4282076 - 4282209
Alignment:
Q  300 ggctacaatttaatttcttaatacctcgtaatctttttgttcattttgaattttggtttaatgtggcttcttctaagaaaattagtaggggttattgttt 399  Q
    ||||||||||||||||| | ||||| ||||||||||||| | ||||||||| ||||| | ||| |||||| |||| |||||| ||  |||| | ||| ||    
T  4282076 ggctacaatttaatttcattataccacgtaatctttttgctaattttgaatgttggtattatgaggcttcatctaggaaaataagacggggattttgctt 4282175  T
Q  400 gatttggct--cgtctatttcggttatttggaag 431  Q
    |||||||||  | ||||||| |||||||||||||    
T  4282176 gatttggcttgcttctatttgggttatttggaag 4282209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 7e-16; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 97 - 215
Target Start/End: Original strand, 22056604 - 22056723
Alignment:
Q  97 gtgcttgaagatgtttctagagctagaataatctaggcttttggtttccttttctacatt-cattattatatatatttctaggctacaatttactgaagg 195  Q
    |||||||||||| |||||||| |||||||||||||||| |||| || |||||||||||||  ||||| ||| || ||| |||||||||| ||| |  ||     
T  22056604 gtgcttgaagatatttctagaactagaataatctaggcatttgtttgccttttctacattagattatcatagatgtttttaggctacaaattaatctaga 22056703  T
Q  196 tattaacagaacaatataga 215  Q
     |||||||||||||| ||||    
T  22056704 cattaacagaacaatctaga 22056723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 97 - 188
Target Start/End: Original strand, 22055529 - 22055621
Alignment:
Q  97 gtgcttgaagatgtttctagagctagaataatctaggcttttggtttccttttctacatt-cattattatatatatttctaggctacaattta 188  Q
    ||||||||||||| ||||||| ||| |||||||||||  |||| || |||||| ||||||  ||||||||| || ||||||||||||||||||    
T  22055529 gtgcttgaagatgattctagaactaaaataatctaggtctttgtttgccttttatacattagattattatagatgtttctaggctacaattta 22055621  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 104 - 156
Target Start/End: Complemental strand, 29374207 - 29374155
Alignment:
Q  104 aagatgtttctagagctagaataatctaggcttttggtttccttttctacatt 156  Q
    |||||| | ||||||||| ||| || |||||||||| ||||||||||||||||    
T  29374207 aagatgatgctagagctataatgatttaggcttttgttttccttttctacatt 29374155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 98 - 154
Target Start/End: Complemental strand, 12739375 - 12739319
Alignment:
Q  98 tgcttgaagatgtttctagagctagaataatctaggcttttggtttccttttctaca 154  Q
    |||||| ||||||||||||| ||| ||||||||||||||||| || |||||||||||    
T  12739375 tgcttgtagatgtttctagaactaaaataatctaggcttttgtttgccttttctaca 12739319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 97 - 154
Target Start/End: Complemental strand, 12738225 - 12738168
Alignment:
Q  97 gtgcttgaagatgtttctagagctagaataatctaggcttttggtttccttttctaca 154  Q
    ||||||| ||||||||||||| ||| ||| ||||||||||||| || |||||||||||    
T  12738225 gtgcttgtagatgtttctagaactaaaattatctaggcttttgtttgccttttctaca 12738168  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 46 - 91
Target Start/End: Complemental strand, 12738334 - 12738289
Alignment:
Q  46 attgtaggaggtgagaatatgatatggtgaagcctttaatattatt 91  Q
    ||||||||||  ||||||||||| |||||||||||| |||||||||    
T  12738334 attgtaggagaagagaatatgatttggtgaagccttcaatattatt 12738289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 154
Target Start/End: Complemental strand, 15023093 - 15023036
Alignment:
Q  97 gtgcttgaagatgtttctagagctagaataatctaggcttttggtttccttttctaca 154  Q
    ||||||| ||||||||||||| ||| |||||||||||| |||| || |||| ||||||    
T  15023093 gtgcttgtagatgtttctagaactaaaataatctaggcatttgtttgccttatctaca 15023036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 97 - 215
Target Start/End: Original strand, 22622439 - 22622558
Alignment:
Q  97 gtgcttgaagatgtttctagagctagaataatctaggcttttggtttccttttctacatt-cattattatatatatttctaggctacaatttactgaagg 195  Q
    |||| ||||||||||||||||  ||||||||||||||  |||| || |||||||||||||  | |||| || || ||| |||||||||||||| |  ||     
T  22622439 gtgcctgaagatgtttctagaattagaataatctaggtctttgtttgccttttctacattagaatattgtagatgtttttaggctacaatttaatctaga 22622538  T
Q  196 tattaacagaacaatataga 215  Q
    |||||| |||||||| ||||    
T  22622539 tattaatagaacaatctaga 22622558  T

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Target: scaffold0406 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 97 - 139
Target Start/End: Complemental strand, 6314 - 6272
Alignment:
Q  97 gtgcttgaagatgtttctagagctagaataatctaggcttttg 139  Q
    |||||||||| |||||||||| |||||||||||||||| ||||    
T  6314 gtgcttgaagctgtttctagaactagaataatctaggcctttg 6272  T

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Target: scaffold0406; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 96
Target Start/End: Complemental strand, 6455 - 6365
Alignment:
Q  6 agtagcataggaccagaggacgcacattagcgatgagcatattgtaggaggtgagaatatgatatggtgaagcctttaatattattgacat 96  Q
    |||||||| |||| ||| ||| ||||||||  || |||  ||| ||||||| || |||||||| | |||||||||| ||||||||||||||    
T  6455 agtagcattggacaagatgacacacattaggaattagctcattataggaggagataatatgattttgtgaagccttcaatattattgacat 6365  T

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