View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11870_high_13 (Length: 437)

Name: NF11870_high_13
Description: NF11870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11870_high_13
NF11870_high_13
[»] chr5 (15 HSPs)
chr5 (27-437)||(11298015-11298451)
chr5 (287-431)||(2555501-2555645)
chr5 (288-437)||(30100688-30100834)
chr5 (287-437)||(10760081-10760230)
chr5 (287-437)||(34419536-34419686)
chr5 (289-435)||(21943818-21943964)
chr5 (287-436)||(17497052-17497201)
chr5 (306-437)||(19491728-19491859)
chr5 (310-426)||(30852646-30852762)
chr5 (310-437)||(13753325-13753452)
chr5 (311-384)||(32539365-32539437)
chr5 (291-435)||(20429954-20430098)
chr5 (348-406)||(19564757-19564815)
chr5 (292-362)||(21211495-21211565)
chr5 (306-347)||(31912288-31912329)
[»] chr6 (10 HSPs)
chr6 (306-437)||(19295373-19295504)
chr6 (310-437)||(25089208-25089335)
chr6 (287-437)||(21222538-21222688)
chr6 (314-437)||(13536616-13536740)
chr6 (287-437)||(10672691-10672840)
chr6 (310-432)||(10862074-10862196)
chr6 (316-400)||(26705089-26705173)
chr6 (287-401)||(26705120-26705234)
chr6 (355-437)||(10588012-10588094)
chr6 (313-406)||(12651182-12651274)
[»] chr7 (14 HSPs)
chr7 (287-437)||(27508632-27508782)
chr7 (291-437)||(5080186-5080332)
chr7 (310-437)||(14197555-14197682)
chr7 (307-437)||(6441437-6441567)
chr7 (311-437)||(38761089-38761215)
chr7 (310-402)||(45012944-45013036)
chr7 (378-437)||(36150904-36150963)
chr7 (287-437)||(3404514-3404662)
chr7 (348-437)||(43257366-43257455)
chr7 (292-364)||(43257342-43257414)
chr7 (310-437)||(15000702-15000829)
chr7 (316-358)||(45013014-45013056)
chr7 (382-410)||(21658723-21658751)
chr7 (316-352)||(37787853-37787889)
[»] scaffold0003 (1 HSPs)
scaffold0003 (313-437)||(314134-314258)
[»] chr4 (28 HSPs)
chr4 (301-437)||(10380682-10380818)
chr4 (299-437)||(11821779-11821917)
chr4 (310-437)||(18830670-18830797)
chr4 (310-437)||(30470914-30471041)
chr4 (287-437)||(2634097-2634247)
chr4 (310-437)||(5448252-5448379)
chr4 (306-437)||(9826688-9826819)
chr4 (287-437)||(2063202-2063352)
chr4 (326-437)||(3370021-3370132)
chr4 (291-437)||(47943525-47943671)
chr4 (291-406)||(5324760-5324875)
chr4 (322-437)||(55382664-55382779)
chr4 (310-435)||(30378800-30378924)
chr4 (301-406)||(47144776-47144881)
chr4 (310-433)||(18836375-18836498)
chr4 (306-402)||(1387370-1387466)
chr4 (310-406)||(10757666-10757762)
chr4 (310-406)||(10970837-10970933)
chr4 (378-437)||(22018014-22018073)
chr4 (316-437)||(1387444-1387566)
chr4 (310-435)||(2232468-2232591)
chr4 (310-406)||(37694996-37695092)
chr4 (299-364)||(12140752-12140817)
chr4 (348-437)||(29908945-29909034)
chr4 (316-437)||(37695034-37695155)
chr4 (346-406)||(1387442-1387502)
chr4 (310-410)||(18500681-18500781)
chr4 (291-364)||(8951097-8951170)
[»] chr2 (8 HSPs)
chr2 (290-437)||(39598583-39598730)
chr2 (310-437)||(31499446-31499573)
chr2 (310-437)||(22092916-22093043)
chr2 (306-437)||(31819970-31820101)
chr2 (287-437)||(24006953-24007103)
chr2 (349-437)||(32092862-32092950)
chr2 (287-364)||(32092832-32092909)
chr2 (328-435)||(8219198-8219304)
[»] scaffold0407 (4 HSPs)
scaffold0407 (307-401)||(928-1022)
scaffold0407 (307-401)||(7392-7486)
scaffold0407 (316-435)||(969-1088)
scaffold0407 (316-435)||(7433-7552)
[»] chr1 (7 HSPs)
chr1 (311-437)||(13735501-13735627)
chr1 (287-437)||(50335497-50335647)
chr1 (310-435)||(37608030-37608155)
chr1 (310-437)||(8097811-8097938)
chr1 (316-369)||(32374100-32374153)
chr1 (310-358)||(11633265-11633313)
chr1 (378-422)||(32374098-32374142)
[»] chr8 (17 HSPs)
chr8 (307-437)||(41358775-41358905)
chr8 (307-437)||(4289018-4289148)
chr8 (287-437)||(23976164-23976313)
chr8 (287-403)||(31253994-31254110)
chr8 (320-437)||(21124383-21124500)
chr8 (287-402)||(22326479-22326594)
chr8 (287-437)||(25149311-25149461)
chr8 (310-435)||(35202656-35202782)
chr8 (310-437)||(18324053-18324180)
chr8 (310-437)||(37543888-37544015)
chr8 (287-437)||(22469506-22469655)
chr8 (339-427)||(29585575-29585663)
chr8 (378-436)||(22426903-22426961)
chr8 (357-437)||(21184355-21184434)
chr8 (310-361)||(21185794-21185845)
chr8 (316-390)||(29585584-29585658)
chr8 (359-404)||(37494422-37494467)
[»] chr3 (20 HSPs)
chr3 (292-437)||(48755383-48755529)
chr3 (299-422)||(15031291-15031414)
chr3 (287-428)||(14434713-14434854)
chr3 (316-437)||(15031244-15031365)
chr3 (310-437)||(11989141-11989268)
chr3 (306-437)||(18445497-18445628)
chr3 (310-437)||(21514800-21514927)
chr3 (310-437)||(43562696-43562823)
chr3 (294-431)||(44967917-44968054)
chr3 (310-426)||(15005025-15005141)
chr3 (287-390)||(20759030-20759133)
chr3 (328-437)||(1426540-1426649)
chr3 (310-437)||(33343062-33343187)
chr3 (306-402)||(36383089-36383185)
chr3 (292-364)||(38498232-38498304)
chr3 (376-437)||(26498678-26498739)
chr3 (387-435)||(42453101-42453149)
chr3 (378-437)||(38498191-38498250)
chr3 (310-364)||(26498644-26498698)
chr3 (290-435)||(26920213-26920358)
[»] scaffold0026 (1 HSPs)
scaffold0026 (306-437)||(57505-57636)
[»] scaffold0024 (1 HSPs)
scaffold0024 (306-437)||(127860-127991)
[»] scaffold0066 (1 HSPs)
scaffold0066 (296-437)||(15421-15562)
[»] scaffold1300 (1 HSPs)
scaffold1300 (287-402)||(1441-1556)
[»] scaffold0102 (1 HSPs)
scaffold0102 (310-437)||(23948-24075)
[»] scaffold0018 (1 HSPs)
scaffold0018 (310-364)||(72011-72065)
[»] scaffold0011 (1 HSPs)
scaffold0011 (292-437)||(190256-190401)
[»] scaffold0049 (1 HSPs)
scaffold0049 (292-364)||(59783-59855)
[»] scaffold0039 (1 HSPs)
scaffold0039 (310-364)||(27585-27639)
[»] scaffold0047 (2 HSPs)
scaffold0047 (378-437)||(11661-11720)
scaffold0047 (307-352)||(11714-11759)


Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-109; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 27 - 437
Target Start/End: Complemental strand, 11298451 - 11298015
Alignment:
Q  27 tacatatcaattgtcaattatacataacattctatattaaagatatctttagtccaaaaagatgtgaagatatttaatacagtcaaaaaagatatttaat 126  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  11298451 tacatatcaattgtcaattatacataacattctatattaaagatatctttagtcaaaaaagatgtaaagatatttaatacagtcaaaaaagatatttaat 11298352  T
Q  127 gtgatacaatgtaatgaaaacata------------tacaaagtttatttaggannnnnnnnnnnnnnnacagtcaaactattcacaact----atggaa 210  Q
    ||||||||||||||||||||||||            ||||||||||||||||||               | |||||||||||||||||||    ||||||    
T  11298351 gtgatacaatgtaatgaaaacataaattaaaatatatacaaagtttatttaggaatatatatatatataa-agtcaaactattcacaactttctatggaa 11298253  T
Q  211 cataatgaattggaaaaataatatctttcgactaaa-----------atagagtaaaatggaaaaatgttctatttccaacttgaatgtccttgaatgaa 299  Q
    |||||||||||| ||||||||||||||| |||||||           ||||| ||||||||||||||||||||||| ||| |||||||||||||||||||    
T  11298252 cataatgaattgaaaaaataatatcttttgactaaacataaattaaaatagactaaaatggaaaaatgttctattttcaatttgaatgtccttgaatgaa 11298153  T
Q  300 gacttggttagtcaatttcagggactaaagtgactaacaaagtgtacattcaggaactaaattgattaatgaattctgcattcagagactaaattgacta 399  Q
    ||||| |||||||||||| |  || |||||||| ||||| ||| ||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||    
T  11298152 gactttgttagtcaattttaaagattaaagtgattaacagagtctacattcaggaactaaattgactaatggagtctgcattcagagactaaattgacta 11298053  T
Q  400 acagagtttacgttgagggactattttgcaatttatct 437  Q
    ||||||| || ||| ||||| |||||||||||||||||    
T  11298052 acagagtctatgttcagggattattttgcaatttatct 11298015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 287 - 431
Target Start/End: Complemental strand, 2555645 - 2555501
Alignment:
Q  287 gtccttgaatgaagacttggttagtcaatttcagggactaaagtgactaacaaagtgtacattcaggaactaaattgattaatgaattctgcattcagag 386  Q
    |||| |||||| |||||  ||| |||||||||||||| ||||||||||||| |||| ||| |||||| ||||| |||| ||| ||| ||||||||||  |    
T  2555645 gtccctgaatgtagactgcgttggtcaatttcagggattaaagtgactaacgaagtctacgttcagggactaatttgactaacgaagtctgcattcaacg 2555546  T
Q  387 actaaattgactaacagagtttacgttgagggactattttgcaat 431  Q
    |||||||||||||||||||| ||| || || ||||||||||||||    
T  2555545 actaaattgactaacagagtctacattcagagactattttgcaat 2555501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 288 - 437
Target Start/End: Original strand, 30100688 - 30100834
Alignment:
Q  288 tccttgaatgaagacttggttagtcaatttcagggactaaagtgactaacaaagtgtacattcaggaactaaattgattaatgaattctgcattcagaga 387  Q
    |||||||||| ||||||   || ||||||||||||||||||||||| |||| ||| |||||||||| |||| ||||| ||||| | ||||||||||| ||    
T  30100688 tccttgaatgtagactt---tattcaatttcagggactaaagtgacaaacagagtctacattcagggactatattgactaatggagtctgcattcaggga 30100784  T
Q  388 ctaaattgactaacagagtttacgttgagggactattttgcaatttatct 437  Q
    ||||| ||| ||||||||| | | || | |||||||||||||||||||||    
T  30100785 ctaaagtgattaacagagtctgcattcatggactattttgcaatttatct 30100834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 287 - 437
Target Start/End: Original strand, 10760081 - 10760230
Alignment:
Q  287 gtccttgaatgaagacttggttagtcaatttcagggactaaagtgactaacaaagtgtacattcaggaactaaattgattaatgaattctgcattcagag 386  Q
    |||| |||||| | |||| ||| |||||||||| |||||||| ||| ||||  ||| |||||||||| |||||||||| ||| | | ||||||||||| |    
T  10760081 gtccctgaatgtaaactttgttggtcaatttcaaggactaaa-tgattaacggagtctacattcagggactaaattgactaacggagtctgcattcaggg 10760179  T
Q  387 actaaattgactaacagagtttacgttgagggactattttgcaatttatct 437  Q
    |||||||||||| ||||||| ||| || |||||||||||||||||||||||    
T  10760180 actaaattgacttacagagtctacatttagggactattttgcaatttatct 10760230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 287 - 437
Target Start/End: Complemental strand, 34419686 - 34419536
Alignment:
Q  287 gtccttgaatgaagacttggttagtcaatttcagggactaaagtgactaacaaagtgtacattcaggaactaaattgattaatgaattctgcattcagag 386  Q
    |||| |||||| |||||| ||| ||||||||||||||||||| |||| |||| ||| |||||| | | |||||||||| ||| ||| ||||| || |  |    
T  34419686 gtccctgaatgtagactttgttggtcaatttcagggactaaaatgaccaacagagtctacatttaaggactaaattgactaacgaagtctgcttttatcg 34419587  T
Q  387 actaaattgactaacagagtttacgttgagggactattttgcaatttatct 437  Q
    ||||||||||||||||||  |||| || |||||||||||||||||||||||    
T  34419586 actaaattgactaacagaacttacattcagggactattttgcaatttatct 34419536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 289 - 435
Target Start/End: Original strand, 21943818 - 21943964
Alignment:
Q  289 ccttgaatgaagacttggttagtcaatttcagggactaaagtgactaacaaagtgtacattcaggaactaaattgattaatgaattctgcattcagagac 388  Q
    ||||||||| |||||| |||||||||||| |||||||||||||| ||||| | | ||||||||   |||||||||| |||  || | ||||||||| |||    
T  21943818 ccttgaatgtagactttgttagtcaattttagggactaaagtgattaacataatctacattcaaagactaaattgactaacaaagtatgcattcagggac 21943917  T
Q  389 taaattgactaacagagtttacgttgagggactattttgcaatttat 435  Q
    |||||||| ||||||||| ||| || | | |||||||||||||||||    
T  21943918 taaattgattaacagagtctacattcatgaactattttgcaatttat 21943964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 287 - 436
Target Start/End: Complemental strand, 17497201 - 17497052
Alignment:
Q  287 gtccttgaatgaagacttggttagtcaatttcagggactaaagtgactaacaaagtgtacattcaggaactaaattgattaatgaattctgcattcagag 386  Q
    |||| |||||| |||||| ||| ||||||||||||||||||||||||  ||  ||| |||||||||| |||||||| | |||   | ||||||||||  |    
T  17497201 gtccctgaatgtagactttgttggtcaatttcagggactaaagtgaccgacggagtctacattcagggactaaattaactaacagaatctgcattcaagg 17497102  T
Q  387 actaaattgactaacagagtttacgttgagggactattttgcaatttatc 436  Q
    |||||||||||||||||||  ||| || | ||||||||||||||||||||    
T  17497101 actaaattgactaacagagactacattcacggactattttgcaatttatc 17497052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 306 - 437
Target Start/End: Complemental strand, 19491859 - 19491728
Alignment:
Q  306 gttagtcaatttcagggactaaagtgactaacaaagtgtacattcaggaactaaattgattaatgaattctgcattcagagactaaattgactaacagag 405  Q
    |||||||||||||| ||| ||| |||||||||  ||| || ||||||| |||||||||||||| ||| |||||||||||| ||||| |||||||||| ||    
T  19491859 gttagtcaatttcaaggattaatgtgactaactgagtctaaattcagggactaaattgattaacgaagtctgcattcagatactaagttgactaacatag 19491760  T
Q  406 tttacgttgagggactattttgcaatttatct 437  Q
    | ||| || |   |||||||||||||||||||    
T  19491759 tatacattcataaactattttgcaatttatct 19491728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 310 - 426
Target Start/End: Complemental strand, 30852762 - 30852646
Alignment:
Q  310 gtcaatttcagggactaaagtgactaacaaagtgtacattcaggaactaaattgattaatgaattctgcattcagagactaaattgactaacagagttta 409  Q
    |||||||||| | |||||||||||||||  | | |||||||||  |||||||||| | | ||| ||||||||||| ||||||||||||||||||||||||    
T  30852762 gtcaatttcatgaactaaagtgactaacggaatctacattcagagactaaattgacttacgaagtctgcattcagggactaaattgactaacagagttta 30852663  T
Q  410 cgttgagggactatttt 426  Q
    | || ||| ||||||||    
T  30852662 cattcaggaactatttt 30852646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 310 - 437
Target Start/End: Original strand, 13753325 - 13753452
Alignment:
Q  310 gtcaatttcagggactaaagtgactaacaaagtgtacattcaggaactaaattgattaatgaattctgcattcagagactaaattgactaacagagttta 409  Q
    ||||||||||||||||||||||||| |   ||| ||| ||||||  ||||||||| ||| | | |||||||| |  ||||||||||||| ||||||| ||    
T  13753325 gtcaatttcagggactaaagtgactgatggagtctactttcaggggctaaattgactaacggagtctgcatttaaggactaaattgacttacagagtcta 13753424  T
Q  410 cgttgagggactattttgcaatttatct 437  Q
    | || |||||||||||||||||||||||    
T  13753425 catttagggactattttgcaatttatct 13753452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 311 - 384
Target Start/End: Original strand, 32539365 - 32539437
Alignment:
Q  311 tcaatttcagggactaaagtgactaacaaagtgtacattcaggaactaaattgattaatgaattctgcattcag 384  Q
    ||||||||||| |||||||||||||||| ||| |||||||| |||||||||||| ||| ||| | |||||||||    
T  32539365 tcaatttcagg-actaaagtgactaacatagtctacattcaagaactaaattgactaacgaagtatgcattcag 32539437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 291 - 435
Target Start/End: Original strand, 20429954 - 20430098
Alignment:
Q  291 ttgaatgaagacttggttagtcaatttcagggactaaagtgactaacaaagtgtacattcaggaactaaattgattaatgaattctgcattcagagacta 390  Q
    ||||||| |||||  ||| |||||||||| ||||||||||||| |||| ||| ||||||||  ||||||||| | |||   | ||||||||||   ||||    
T  20429954 ttgaatgtagactctgttggtcaatttcaaggactaaagtgacgaacagagtttacattcaaaaactaaattaactaacagagtctgcattcatgaacta 20430053  T
Q  391 aattgactaacagagtttacgttgagggactattttgcaatttat 435  Q
    ||||||||||| |||| ||  || |   |||||||||||||||||    
T  20430054 aattgactaacggagtctatattcaaaaactattttgcaatttat 20430098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 348 - 406
Target Start/End: Original strand, 19564757 - 19564815
Alignment:
Q  348 ttcaggaactaaattgattaatgaattctgcattcagagactaaattgactaacagagt 406  Q
    |||||| |||||| ||||||||| | ||| |||||||||||||||||||||||| ||||    
T  19564757 ttcagggactaaagtgattaatggagtctacattcagagactaaattgactaacggagt 19564815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 292 - 362
Target Start/End: Original strand, 21211495 - 21211565
Alignment:
Q  292 tgaatgaagacttggttagtcaatttcagggactaaagtgactaacaaagtgtacattcaggaactaaatt 362  Q
    |||||| |||||| ||| |||||||||||| |||||||||||||||  | | |||||||||  ||||||||    
T  21211495 tgaatgtagactttgttggtcaatttcaggaactaaagtgactaacgcaatctacattcagagactaaatt 21211565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 347
Target Start/End: Original strand, 31912288 - 31912329
Alignment:
Q  306 gttagtcaatttcagggactaaagtgactaacaaagtgtaca 347  Q
    |||||||||||||| |||||||||||||||||| ||| ||||    
T  31912288 gttagtcaatttcatggactaaagtgactaacagagtctaca 31912329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 80; Significance: 2e-37; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 306 - 437
Target Start/End: Original strand, 19295373 - 19295504
Alignment:
Q  306 gttagtcaatttcagggactaaagtgactaacaaagtgtacattcaggaactaaattgattaatgaattctgcattcagagactaaattgactaacagag 405  Q
    |||||||||||||||||||||||||||| |||  ||| |||||||||| |||||||||| ||||||| ||||||||||| ||||||||||||||||||||    
T  19295373 gttagtcaatttcagggactaaagtgaccaacggagtctacattcagggactaaattgactaatgaagtctgcattcagggactaaattgactaacagag 19295472  T
Q  406 tttacgttgagggactattttgcaatttatct 437  Q
    | | | || ||||||||||||| |||||||||    
T  19295473 tctgcattcagggactattttgtaatttatct 19295504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 310 - 437
Target Start/End: Complemental strand, 25089335 - 25089208
Alignment:
Q  310 gtcaatttcagggactaaagtgactaacaaagtgtacattcaggaactaaattgattaatgaattctgcattcagagactaaattgactaacagagttta 409  Q
    |||||||||| ||||||||||||||||  |||| |||||||||| |||||||||| ||||| | ||||||||||  ||||||||||||||||||||| ||    
T  25089335 gtcaatttcatggactaaagtgactaatgaagtctacattcagggactaaattgactaatggagtctgcattcaatgactaaattgactaacagagtcta 25089236  T
Q  410 cgttgagggactattttgcaatttatct 437  Q
    | || |||||||||||||||||||||||    
T  25089235 cattcagggactattttgcaatttatct 25089208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 287 - 437
Target Start/End: Original strand, 21222538 - 21222688
Alignment:
Q  287 gtccttgaatgaagacttggttagtcaatttcagggactaaagtgactaacaaagtgtacattcaggaactaaattgattaatgaattctgcattcagag 386  Q
    ||||||||| | |||||  |||||||||||||| ||| ||| |||||||||  ||| |||||||||| |||||||||| ||| ||| |||||||||||||    
T  21222538 gtccttgaacgtagactctgttagtcaatttcaaggattaatgtgactaactgagtctacattcagggactaaattgactaacgaagtctgcattcagag 21222637  T
Q  387 actaaattgactaacagagtttacgttgagggactattttgcaatttatct 437  Q
    ||||| |||||||||| ||| ||| || || ||||||||||||||||||||    
T  21222638 actaagttgactaacatagtatacattcagagactattttgcaatttatct 21222688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 314 - 437
Target Start/End: Complemental strand, 13536740 - 13536616
Alignment:
Q  314 atttcagggactaaagtgactaacaaagtgtacattcaggaa-ctaaattgattaatgaattctgcattcagagactaaattgactaacagagtttacgt 412  Q
    ||||||||||||||||||||||||| ||| ||||||||||   ||||||||| ||| | | ||||||||||| ||||||||||||||||||||| ||| |    
T  13536740 atttcagggactaaagtgactaacagagtctacattcagggggctaaattgactaacggagtctgcattcagggactaaattgactaacagagtctacat 13536641  T
Q  413 tgagggactattttgcaatttatct 437  Q
    | |||||||||||||||||||||||    
T  13536640 tcagggactattttgcaatttatct 13536616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 287 - 437
Target Start/End: Original strand, 10672691 - 10672840
Alignment:
Q  287 gtccttgaatgaagacttggttagtcaatttcagggactaaagtgactaacaaagtgtacattcaggaactaaattgattaatgaattctgcattcagag 386  Q
    |||| |||||| |||||  ||| || ||||||||| |||| |||||||||| |||| |||||||||| |||||||||| ||| ||| | |||||||||||    
T  10672691 gtccctgaatgtagactatgttggtaaatttcaggaactatagtgactaacgaagtctacattcagggactaaattgactaacgaaatatgcattcagag 10672790  T
Q  387 actaaattgactaacagagtttacgttgagggactattttgcaatttatct 437  Q
    |||||||||| ||||| | | ||| || ||| |||||||||||||||||||    
T  10672791 actaaattgattaaca-aatctacattcaggaactattttgcaatttatct 10672840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 310 - 432
Target Start/End: Complemental strand, 10862196 - 10862074
Alignment:
Q  310 gtcaatttcagggactaaagtgactaacaaagtgtacattcaggaactaaattgattaatgaattctgcattcagagactaaattgactaacagagttta 409  Q
    |||||||||||||||||||||||| |||| ||| || ||||||| |||||||||| ||| | | ||||| ||||| || | |||||||||||||||| ||    
T  10862196 gtcaatttcagggactaaagtgacgaacagagtctatattcagggactaaattgactaacggagtctgccttcagggattgaattgactaacagagtcta 10862097  T
Q  410 cgttgagggactattttgcaatt 432  Q
    | || ||||||||  ||||||||    
T  10862096 cattcagggactacattgcaatt 10862074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 316 - 400
Target Start/End: Complemental strand, 26705173 - 26705089
Alignment:
Q  316 ttcagggactaaagtgactaacaaagtgtacattcaggaactaaattgattaatgaattctgcattcagagactaaattgactaa 400  Q
    ||||||||||||| ||||||||  | | || ||||||| |||||||||||||| ||| ||||||||||| |||||||||||||||    
T  26705173 ttcagggactaaattgactaacggattctatattcagggactaaattgattaacgaaatctgcattcagggactaaattgactaa 26705089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 287 - 401
Target Start/End: Complemental strand, 26705234 - 26705120
Alignment:
Q  287 gtccttgaatgaagacttggttagtcaatttcagggactaaagtgactaacaaagtgtacattcaggaactaaattgattaatgaattctgcattcagag 386  Q
    |||| |||||| |||| | ||| ||||||||||||||||||||||||||||    | |||||||||| |||||||||| ||| | |||||  |||||| |    
T  26705234 gtccctgaatgtagacgttgttggtcaatttcagggactaaagtgactaacgggttctacattcagggactaaattgactaacggattctatattcaggg 26705135  T
Q  387 actaaattgactaac 401  Q
    |||||||||| ||||    
T  26705134 actaaattgattaac 26705120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 355 - 437
Target Start/End: Original strand, 10588012 - 10588094
Alignment:
Q  355 actaaattgattaatgaattctgcattcagagactaaattgactaacagagtttacgttgagggactattttgcaatttatct 437  Q
    |||||||||| ||| | | ||||||||||  ||||||||||||||| | ||| ||| || | |||||||||||||||||||||    
T  10588012 actaaattgactaacggagtctgcattcaaggactaaattgactaataaagtctacattcatggactattttgcaatttatct 10588094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 406
Target Start/End: Original strand, 12651182 - 12651274
Alignment:
Q  313 aatttcagggactaaagtgactaacaaagtgtacattcaggaactaaattgattaatgaattctgcattcagagactaaattgactaacagagt 406  Q
    ||||| || ||||||||||||||||||||| |||| ||||  |||||||||| |||   | || |||||||| ||| |||||||||||| ||||    
T  12651182 aattttagagactaaagtgactaacaaagtctaca-tcagagactaaattgactaacagagtcggcattcagggaccaaattgactaacggagt 12651274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 2e-34; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 287 - 437
Target Start/End: Complemental strand, 27508782 - 27508632
Alignment:
Q  287 gtccttgaatgaagacttggttagtcaatttcagggactaaagtgactaacaaagtgtacattcaggaactaaattgattaatgaattctgcattcagag 386  Q
    |||| |||||| |||||  |||||||||||||| |||||||||||||||||  ||| |||||||||| |||||||||| |||   | ||||||||||| |    
T  27508782 gtccctgaatgtagactctgttagtcaatttcatggactaaagtgactaacggagtctacattcagggactaaattgactaacagagtctgcattcaggg 27508683  T
Q  387 actaaattgactaacagagtttacgttgagggactattttgcaatttatct 437  Q
    |||||||||||||||| ||| ||| || |||||||||||||||||||||||    
T  27508682 actaaattgactaacatagtctacattcagggactattttgcaatttatct 27508632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 291 - 437
Target Start/End: Original strand, 5080186 - 5080332
Alignment:
Q  291 ttgaatgaagacttggttagtcaatttcagggactaaagtgactaacaaagtgtacattcaggaactaaattgattaatgaattctgcattcagagacta 390  Q
    ||||||| |||||  |||||||||||||| |||||||| ||| ||||  ||| |||||||||| |||||||||||||| | | ||||||||||| |||||    
T  5080186 ttgaatgtagactctgttagtcaatttcaaggactaaaatgattaacggagtctacattcaggtactaaattgattaacggagtctgcattcagggacta 5080285  T
Q  391 aattgactaacagagtttacgttgagggactattttgcaatttatct 437  Q
    |||||||||| | ||||||| || || ||||||||| ||||||||||    
T  5080286 aattgactaatatagtttacattcagagactattttacaatttatct 5080332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 310 - 437
Target Start/End: Original strand, 14197555 - 14197682
Alignment:
Q  310 gtcaatttcagggactaaagtgactaacaaagtgtacattcaggaactaaattgattaatgaattctgcattcagagactaaattgactaacagagttta 409  Q
    ||||||||||||||||||||||||||||  ||| |||||| ||  |||||||||| ||| | | ||||||||||| || |||||||||||||||||| ||    
T  14197555 gtcaatttcagggactaaagtgactaacggagtctacattgagagactaaattgactaacggagtctgcattcagggattaaattgactaacagagtcta 14197654  T
Q  410 cgttgagggactattttgcaatttatct 437  Q
    | || ||||||||| |||||||||||||    
T  14197655 cattcagggactatattgcaatttatct 14197682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 307 - 437
Target Start/End: Original strand, 6441437 - 6441567
Alignment:
Q  307 ttagtcaatttcagggactaaagtgactaacaaagtgtacattcaggaactaaattgattaatgaattctgcattcagagactaaattgactaacagagt 406  Q
    ||||||||||||| |||| ||||||||||||  ||| |||||| ||  |||||||||| |||   | ||||||||||| ||||||||||||||||| |||    
T  6441437 ttagtcaatttcaaggacaaaagtgactaacggagtctacatttagagactaaattgactaacagagtctgcattcagggactaaattgactaacaaagt 6441536  T
Q  407 ttacgttgagggactattttgcaatttatct 437  Q
     ||| || ||||| |||||||||||||||||    
T  6441537 ctacattcagggattattttgcaatttatct 6441567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 311 - 437
Target Start/End: Original strand, 38761089 - 38761215
Alignment:
Q  311 tcaatttcagggactaaagtgactaacaaagtgtacattcaggaactaaattgattaatgaattctgcattcagagactaaattgactaacagagtttac 410  Q
    |||||||  ||||||||||||||||||| ||| | |||||||| |||||||||| |||   | |||||||||   ||||||||||| ||||| ||| |||    
T  38761089 tcaatttttgggactaaagtgactaacagagtctgcattcagggactaaattgactaacagagtctgcattcgaggactaaattgattaacaaagtctac 38761188  T
Q  411 gttgagggactattttgcaatttatct 437  Q
     || |||||||||||||||||||||||    
T  38761189 attcagggactattttgcaatttatct 38761215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 310 - 402
Target Start/End: Original strand, 45012944 - 45013036
Alignment:
Q  310 gtcaatttcagggactaaagtgactaacaaagtgtacattcaggaactaaattgattaatgaattctgcattcagagactaaattgactaaca 402  Q
    ||||||||||||||||||||||| || |  ||| |||||||||  | |||||||| ||| | | ||||||||||| |||||||||||||||||    
T  45012944 gtcaatttcagggactaaagtgattagcggagtctacattcagagattaaattgactaacggagtctgcattcagggactaaattgactaaca 45013036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 378 - 437
Target Start/End: Complemental strand, 36150963 - 36150904
Alignment:
Q  378 cattcagagactaaattgactaacagagtttacgttgagggactattttgcaatttatct 437  Q
    ||||||||||||||||||||||||||||| ||| |  ||||| |||||||||||||||||    
T  36150963 cattcagagactaaattgactaacagagtctacatctagggattattttgcaatttatct 36150904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 287 - 437
Target Start/End: Complemental strand, 3404662 - 3404514
Alignment:
Q  287 gtccttgaatgaagacttggttagtcaatttcagggactaaagtgactaacaaagtgtacattcaggaactaaattgattaatgaattctgcattcagag 386  Q
    ||||||||||| ||||| ||||||||||| ||||  ||||||||||||||   |   |||| ||||| |||||||||| |||   |  ||||||| || |    
T  3404662 gtccttgaatgtagactcggttagtcaatatcagaaactaaagtgactaatggaac-tacactcagggactaaattgactaacagag-ctgcatttaggg 3404565  T
Q  387 actaaattgactaacagagtttacgttgagggactattttgcaatttatct 437  Q
    |||||||||||||||||||| ||| || | |||||| ||||||||||||||    
T  3404564 actaaattgactaacagagtgtacattcatggactactttgcaatttatct 3404514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 348 - 437
Target Start/End: Original strand, 43257366 - 43257455
Alignment:
Q  348 ttcaggaactaaattgattaatgaattctgcattcagagactaaattgactaacagagtttacgttgagggactattttgcaatttatct 437  Q
    |||||| | |||||||| ||| ||| ||| |||| || ||||||||||||||||||||| ||  || | ||| |||||||||||||||||    
T  43257366 ttcagggagtaaattgactaacgaagtctacatttagggactaaattgactaacagagtctatattcaaggattattttgcaatttatct 43257455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 292 - 364
Target Start/End: Original strand, 43257342 - 43257414
Alignment:
Q  292 tgaatgaagacttggttagtcaatttcagggactaaagtgactaacaaagtgtacattcaggaactaaattga 364  Q
    |||||| ||| || ||| |||||||||||||| |||| |||||||| |||| |||||| ||| ||||||||||    
T  43257342 tgaatgtagattttgttggtcaatttcagggagtaaattgactaacgaagtctacatttagggactaaattga 43257414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 310 - 437
Target Start/End: Complemental strand, 15000829 - 15000702
Alignment:
Q  310 gtcaatttcagggactaaagtgactaacaaagtgtacattcaggaactaaattgattaatgaattctgcattcagagactaaattgactaacagagttta 409  Q
    |||||||||||||||||||||| | |||  ||| |||||| ||| |||||||||| ||  | | ||| ||||||  ||||||| ||||||||| | | ||    
T  15000829 gtcaatttcagggactaaagtgtccaacggagtctacattaagggactaaattgactatcggagtcttcattcaaggactaaactgactaacataatcta 15000730  T
Q  410 cgttgagggactattttgcaatttatct 437  Q
    | ||  | || |||||||||||||||||    
T  15000729 cattctgagaatattttgcaatttatct 15000702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 316 - 358
Target Start/End: Original strand, 45013014 - 45013056
Alignment:
Q  316 ttcagggactaaagtgactaacaaagtgtacattcaggaacta 358  Q
    ||||||||||||| ||||||||||| | |||||||||||||||    
T  45013014 ttcagggactaaattgactaacaaactctacattcaggaacta 45013056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 382 - 410
Target Start/End: Complemental strand, 21658751 - 21658723
Alignment:
Q  382 cagagactaaattgactaacagagtttac 410  Q
    |||||||||||||||||||||||||||||    
T  21658751 cagagactaaattgactaacagagtttac 21658723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 316 - 352
Target Start/End: Original strand, 37787853 - 37787889
Alignment:
Q  316 ttcagggactaaagtgactaacaaagtgtacattcag 352  Q
    ||||||||||||| ||||||||||||| |||||||||    
T  37787853 ttcagggactaaattgactaacaaagtctacattcag 37787889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 313 - 437
Target Start/End: Complemental strand, 314258 - 314134
Alignment:
Q  313 aatttcagggactaaagtgactaacaaagtgtacattcaggaactaaattgattaatgaattctgcattcagagactaaattgactaacagagtttacgt 412  Q
    |||||||||||||||||||||||||| | | |||||||||| |||||||||| ||| | | ||||||||||| ||||||||||||||||||||| ||| |    
T  314258 aatttcagggactaaagtgactaacagactctacattcagggactaaattgactaacggagtctgcattcagggactaaattgactaacagagtctacat 314159  T
Q  413 tgagggactattttgcaatttatct 437  Q
    | |||||||||||||||||| ||||    
T  314158 ttagggactattttgcaattaatct 314134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 3e-33; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 301 - 437
Target Start/End: Original strand, 10380682 - 10380818
Alignment:
Q  301 acttggttagtcaatttcagggactaaagtgactaacaaagtgtacattcaggaactaaattgattaatgaattctgcattcagagactaaattgactaa 400  Q
    |||| ||| ||||||||||||||||||||||||||||  ||| |||||| ||| |||||||||| ||| ||| ||||||||||| || ||||||||||||    
T  10380682 actttgttggtcaatttcagggactaaagtgactaactgagtctacatttagggactaaattgactaacgaagtctgcattcagggattaaattgactaa 10380781  T
Q  401 cagagtttacgttgagggactattttgcaatttatct 437  Q
    |||||| ||| || || ||||||||||||||||||||    
T  10380782 cagagtctacatttagagactattttgcaatttatct 10380818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 299 - 437
Target Start/End: Complemental strand, 11821917 - 11821779
Alignment:
Q  299 agacttggttagtcaatttcagggactaaagtgactaacaaagtgtacattcaggaactaaattgattaatgaattctgcattcagagactaaattgact 398  Q
    |||||| ||| ||||||||||||||||||||||||||||| ||| ||||||||   |||||||||| ||| ||| ||||||||||| ||||||||| |||    
T  11821917 agactttgttggtcaatttcagggactaaagtgactaacagagtctacattcatagactaaattgactaacgaaatctgcattcagggactaaattaact 11821818  T
Q  399 aacagagtttacgttgagggactattttgcaatttatct 437  Q
    |||||||| ||| || |  ||||||||||||||||||||    
T  11821817 aacagagtctacattcaaagactattttgcaatttatct 11821779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 310 - 437
Target Start/End: Original strand, 18830670 - 18830797
Alignment:
Q  310 gtcaatttcagggactaaagtgactaacaaagtgtacattcaggaactaaattgattaatgaattctgcattcagagactaaattgactaacagagttta 409  Q
    |||||||||||||||||||||||||||   ||| |||||||||| |||||||||| ||| ||| ||||||||||| |||||||| |||||||||| | ||    
T  18830670 gtcaatttcagggactaaagtgactaatggagtctacattcagggactaaattgactaacgaagtctgcattcagggactaaatggactaacagaatcta 18830769  T
Q  410 cgttgagggactattttgcaatttatct 437  Q
    | || | |||||||||||||||||||||    
T  18830770 cattcaaggactattttgcaatttatct 18830797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 310 - 437
Target Start/End: Original strand, 30470914 - 30471041
Alignment:
Q  310 gtcaatttcagggactaaagtgactaacaaagtgtacattcaggaactaaattgattaatgaattctgcattcagagactaaattgactaacagagttta 409  Q
    ||||||||||||||||||||||||||||| ||| ||||||||   |||||||||||||| | | ||||||||||| ||||||||||| ||||| ||| ||    
T  30470914 gtcaatttcagggactaaagtgactaacagagtctacattcaatgactaaattgattaacggagtctgcattcagggactaaattgattaacatagtcta 30471013  T
Q  410 cgttgagggactattttgcaatttatct 437  Q
    | || |||||||||||| ||||||||||    
T  30471014 cattcagggactattttacaatttatct 30471041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 287 - 437
Target Start/End: Original strand, 2634097 - 2634247
Alignment:
Q  287 gtccttgaatgaagacttggttagtcaatttcagggactaaagtgactaacaaagtgtacattcaggaactaaattgattaatgaattctgcattcagag 386  Q
    |||| |||||| ||||||  || ||||||||||| ||||||||||| ||||||||| |||||||||| ||||||||||  ||   | ||||||||||| |    
T  2634097 gtccctgaatgtagactttattggtcaatttcagcgactaaagtgattaacaaagtctacattcagggactaaattgacgaacagagtctgcattcaggg 2634196  T
Q  387 actaaattgactaacagagtttacgttgagggactattttgcaatttatct 437  Q
    |||||||||||||||||||| ||| || || |||||||| |||||||||||    
T  2634197 actaaattgactaacagagtctacattcagagactatttagcaatttatct 2634247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 310 - 437
Target Start/End: Complemental strand, 5448379 - 5448252
Alignment:
Q  310 gtcaatttcagggactaaagtgactaacaaagtgtacattcaggaactaaattgattaatgaattctgcattcagagactaaattgactaacagagttta 409  Q
    |||||||||||| ||||||||||||||  |||| || ||||||| ||||||||||  || | | ||||||| ||| ||||||||||||||||||||||||    
T  5448379 gtcaatttcaggaactaaagtgactaatgaagtctatattcagggactaaattgaccaacggagtctgcatccagggactaaattgactaacagagttta 5448280  T
Q  410 cgttgagggactattttgcaatttatct 437  Q
    | || |||| ||||||| ||||||||||    
T  5448279 cattcaggggctattttacaatttatct 5448252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 306 - 437
Target Start/End: Complemental strand, 9826819 - 9826688
Alignment:
Q  306 gttagtcaatttcagggactaaagtgactaacaaagtgtacattcaggaactaaattgattaatgaattctgcattcagagactaaattgactaacagag 405  Q
    |||||||||||||| ||| ||| |||||||||  ||| || ||||||| | |||||||||||| ||| |||||||||||| ||||| |||||||||| ||    
T  9826819 gttagtcaatttcaaggattaatgtgactaactgagtctaaattcagggattaaattgattaacgaagtctgcattcagatactaagttgactaacatag 9826720  T
Q  406 tttacgttgagggactattttgcaatttatct 437  Q
    | ||| || ||  |||||||||||||||||||    
T  9826719 tatacattcagaaactattttgcaatttatct 9826688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 287 - 437
Target Start/End: Complemental strand, 2063352 - 2063202
Alignment:
Q  287 gtccttgaatgaagacttggttagtcaatttcagggactaaagtgactaacaaagtgtacattcaggaactaaattgattaatgaattctgcattcagag 386  Q
    |||| |||||| |||||  ||| |||||||| |  ||||||||||||||||||| | |||||| ||| |||||||||| ||| | | | |||||||||||    
T  2063352 gtccctgaatgtagactctgttggtcaattttaaagactaaagtgactaacaaattctacatttagggactaaattgactaacggagtttgcattcagag 2063253  T
Q  387 actaaattgactaacagagtttacgttgagggactattttgcaatttatct 437  Q
    |||||||||||||||| ||||||| || |  |||||||||  |||||||||    
T  2063252 actaaattgactaacatagtttacattcaatgactattttataatttatct 2063202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 326 - 437
Target Start/End: Complemental strand, 3370132 - 3370021
Alignment:
Q  326 aaagtgactaacaaagtgtacattcaggaactaaattgattaatgaattctgcattcagagactaaattgactaacagagtttacgttgagggactattt 425  Q
    ||||||||||| | ||| |||||| ||  |||||||||| ||| ||| ||||||||||| ||||||||||||||||||||| ||| || |  ||||||||    
T  3370132 aaagtgactaatagagtctacattaagagactaaattgactaacgaagtctgcattcagggactaaattgactaacagagtctacatttaatgactattt 3370033  T
Q  426 tgcaatttatct 437  Q
    ||||||||||||    
T  3370032 tgcaatttatct 3370021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 291 - 437
Target Start/End: Original strand, 47943525 - 47943671
Alignment:
Q  291 ttgaatgaagacttggttagtcaatttcagggactaaagtgactaacaaagtgtacattcaggaactaaattgattaatgaattctgcattcagagacta 390  Q
    ||||||| ||| || ||| |||||||| |||||||| ||||| ||||| ||| |||||||||| | |||||||| ||| |  | |||||||||   ||||    
T  47943525 ttgaatgtagattttgttggtcaattttagggactatagtgattaacatagtctacattcagggattaaattgactaacggttcctgcattcaagaacta 47943624  T
Q  391 aattgactaacagagtttacgttgagggactattttgcaatttatct 437  Q
    |||||||||||  ||| ||| || |||||||||||||||||||||||    
T  47943625 aattgactaaccaagtctacattcagggactattttgcaatttatct 47943671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 291 - 406
Target Start/End: Original strand, 5324760 - 5324875
Alignment:
Q  291 ttgaatgaagacttggttagtcaatttcagggactaaagtgactaacaaagtgtacattcaggaactaaattgattaatgaattctgcattcagagacta 390  Q
    ||||||| |||||  ||| |||||||||||||||||||||||| |||| ||| |||||||| | |||||||||| |||   | ||||||||||   ||||    
T  5324760 ttgaatgtagactctgttggtcaatttcagggactaaagtgacgaacagagtttacattcaaggactaaattgactaacagagtctgcattcatgaacta 5324859  T
Q  391 aattgactaacagagt 406  Q
    ||||||||||||||||    
T  5324860 aattgactaacagagt 5324875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 322 - 437
Target Start/End: Original strand, 55382664 - 55382779
Alignment:
Q  322 gactaaagtgactaacaaagtgtacattcaggaactaaattgattaatgaattctgcattcagagactaaattgactaacagagtttacgttgagggact 421  Q
    ||||||||||||||||  ||| ||||| |||| |||||||||| ||| | | |||||||| || ||| ||||||||||||| ||| ||| || || ||||    
T  55382664 gactaaagtgactaacggagtctacatccagggactaaattgactaacggaatctgcatttagggacaaaattgactaacaaagtctacattcagagact 55382763  T
Q  422 attttgcaatttatct 437  Q
    ||||||||||||||||    
T  55382764 attttgcaatttatct 55382779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 310 - 435
Target Start/End: Complemental strand, 30378924 - 30378800
Alignment:
Q  310 gtcaatttcagggactaaagtgactaacaaagtgtacattcaggaactaaattgattaatgaattctgcattcagagactaaattgactaacagagttta 409  Q
    |||||||||||  |||||||||||||||  ||| || ||||||| ||| |||||| |||   | |||||||||||||||| |||||||||||||||| |     
T  30378924 gtcaatttcagacactaaagtgactaacggagtcta-attcagggactgaattgactaacagagtctgcattcagagactgaattgactaacagagtctg 30378826  T
Q  410 cgttgagggactattttgcaatttat 435  Q
    | || || ||||||||||||||||||    
T  30378825 cattcagagactattttgcaatttat 30378800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 301 - 406
Target Start/End: Complemental strand, 47144881 - 47144776
Alignment:
Q  301 acttggttagtcaatttcagggactaaagtgactaacaaagtgtacattcaggaactaaattgattaatgaattctgcattcagagactaaattgactaa 400  Q
    |||| |||||||||||||| ||||||||||||| |||  ||| | ||||||||||||||||||||||| | | |||  |||||  |||||||||||||||    
T  47144881 actttgttagtcaatttcaaggactaaagtgaccaacggagtctgcattcaggaactaaattgattaacggagtctttattcaaggactaaattgactaa 47144782  T
Q  401 cagagt 406  Q
    | ||||    
T  47144781 ctgagt 47144776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 310 - 433
Target Start/End: Original strand, 18836375 - 18836498
Alignment:
Q  310 gtcaatttcagggactaaagtgactaacaaagtgtacattcaggaactaaattgattaatgaattctgcattcagagactaaattgactaacagagttta 409  Q
    |||||||| | ||||||||||||||||   ||| |||||||||| ||||||| || ||| | | ||||||||||| |||||||| |||||||||||| ||    
T  18836375 gtcaattttatggactaaagtgactaatggagtctacattcagggactaaat-gactaacggagtctgcattcagggactaaatggactaacagagtcta 18836473  T
Q  410 cgttgagggacta-ttttgcaattt 433  Q
    |||| ||||| || |||||||||||    
T  18836474 cgttcagggattacttttgcaattt 18836498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 306 - 402
Target Start/End: Original strand, 1387370 - 1387466
Alignment:
Q  306 gttagtcaatttcagggactaaagtgactaacaaagtgtacattcaggaactaaattgattaatgaattctgcattcagagactaaattgactaaca 402  Q
    |||||||||| | ||||||||||||||||||| |||| ||||||| ||||||||||||| ||| |   | |||||||||  |||||| |||||||||    
T  1387370 gttagtcaatattagggactaaagtgactaacgaagtctacattccggaactaaattgactaacggggtttgcattcaggaactaaagtgactaaca 1387466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 310 - 406
Target Start/End: Original strand, 10757666 - 10757762
Alignment:
Q  310 gtcaatttcagggactaaagtgactaacaaagtgtacattcaggaactaaattgattaatgaattctgcattcagagactaaattgactaacagagt 406  Q
    |||||| ||||||| || ||||| ||||| ||| |||||||||| |||||||||| ||| | | ||||||||||| |||||||||  ||||||||||    
T  10757666 gtcaatctcagggattatagtgattaacagagtctacattcagggactaaattgactaacggagtctgcattcagggactaaattcgctaacagagt 10757762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 310 - 406
Target Start/End: Original strand, 10970837 - 10970933
Alignment:
Q  310 gtcaatttcagggactaaagtgactaacaaagtgtacattcaggaactaaattgattaatgaattctgcattcagagactaaattgactaacagagt 406  Q
    |||||| ||||||| || ||||| ||||| ||| |||||||||| |||||||||| ||| | | ||||||||||| |||||||||  ||||||||||    
T  10970837 gtcaatctcagggattatagtgattaacagagtctacattcagggactaaattgactaacggagtctgcattcagggactaaattcgctaacagagt 10970933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 378 - 437
Target Start/End: Original strand, 22018014 - 22018073
Alignment:
Q  378 cattcagagactaaattgactaacagagtttacgttgagggactattttgcaatttatct 437  Q
    |||||||||||||||| |||||||| ||| ||| || |||||||||||||||||||||||    
T  22018014 cattcagagactaaatagactaacatagtctacattcagggactattttgcaatttatct 22018073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 316 - 437
Target Start/End: Original strand, 1387444 - 1387566
Alignment:
Q  316 ttcagggactaaagtgactaacaaagtgtacattcaggaactaaattgattaatgaattctgcattca-gagactaaattgactaacagagtttacgttg 414  Q
    |||||| |||||||||||||||||||| |||||||||  |||||||||| |||   | |||||||||| | |||||||||||  |||| | | ||| ||     
T  1387444 ttcaggaactaaagtgactaacaaagtctacattcagcgactaaattgactaacagagtctgcattcaggggactaaattgatgaacaaaatctacattc 1387543  T
Q  415 agggactattttgcaatttatct 437  Q
    ||||| |||||| ||||||||||    
T  1387544 agggaatattttacaatttatct 1387566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 310 - 435
Target Start/End: Original strand, 2232468 - 2232591
Alignment:
Q  310 gtcaatttcagggactaaagtgactaacaaagtgtacattcaggaactaaattgattaatgaattctgcattcagagactaaattgactaacagagttta 409  Q
    ||||||||||||||||||||||| ||| ||||| |||||||||| |||||||||  |||   | ||| ||  ||| || |||||||||||||| ||| ||    
T  2232468 gtcaatttcagggactaaagtgattaa-aaagtctacattcagggactaaattggctaacagagtct-caaccagggattaaattgactaacatagtcta 2232565  T
Q  410 cgttgagggactattttgcaatttat 435  Q
    | |||| |||||||||| ||||||||    
T  2232566 cattgaaggactattttacaatttat 2232591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 310 - 406
Target Start/End: Original strand, 37694996 - 37695092
Alignment:
Q  310 gtcaatttcagggactaaagtgactaacaaagtgtacattcaggaactaaattgattaatgaattctgcattcagagactaaattgactaacagagt 406  Q
    |||||||| || ||||||||||||||| | ||| || ||||||| |||||||||| ||| |   |||||||| || || ||||||||||||||||||    
T  37694996 gtcaatttaagtgactaaagtgactaatagagtctatattcagggactaaattgactaacggggtctgcatttagggattaaattgactaacagagt 37695092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 299 - 364
Target Start/End: Original strand, 12140752 - 12140817
Alignment:
Q  299 agacttggttagtcaatttcagggactaaagtgactaacaaagtgtacattcaggaactaaattga 364  Q
    |||||| |||| ||||||| |||||||||| ||||||||||| | |||||||| | ||||||||||    
T  12140752 agactttgttaatcaattttagggactaaaatgactaacaaattctacattcaaggactaaattga 12140817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 348 - 437
Target Start/End: Complemental strand, 29909034 - 29908945
Alignment:
Q  348 ttcaggaactaaattgattaatgaattctgcattcagagactaaattgactaacagagtttacgttgagggactattttgcaatttatct 437  Q
    ||||||||||||| ||| ||||| | ||| ||||||  |||||||||||||||| |||| | | || | | |||||||||||||||||||    
T  29909034 ttcaggaactaaagtgaataatggactctacattcaacgactaaattgactaacggagtctgcattcatgaactattttgcaatttatct 29908945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 316 - 437
Target Start/End: Original strand, 37695034 - 37695155
Alignment:
Q  316 ttcagggactaaagtgactaacaaagtgtacattcaggaactaaattgattaatgaattctgcattcagagactaaattgactaacagagtttacgttga 415  Q
    ||||||||||||| ||||||||   || | |||| ||| | |||||||| |||   | ||||||||||  || |||||||||||||||||| ||| || |    
T  37695034 ttcagggactaaattgactaacggggtctgcatttagggattaaattgactaacagagtctgcattcaacgattaaattgactaacagagtctacattca 37695133  T
Q  416 gggactattttgcaatttatct 437  Q
    | || |||||||||||||||||    
T  37695134 gagattattttgcaatttatct 37695155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 346 - 406
Target Start/End: Original strand, 1387442 - 1387502
Alignment:
Q  346 cattcaggaactaaattgattaatgaattctgcattcagagactaaattgactaacagagt 406  Q
    ||||||||||||||| ||| |||  || ||| ||||||| |||||||||||||||||||||    
T  1387442 cattcaggaactaaagtgactaacaaagtctacattcagcgactaaattgactaacagagt 1387502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 310 - 410
Target Start/End: Complemental strand, 18500781 - 18500681
Alignment:
Q  310 gtcaatttcagggactaaagtgactaacaaagtgtacattcaggaactaaattgattaatgaattctgcattcagagactaaattgactaacagagttta 409  Q
    ||||||||||| ||||||||||| ||||| ||| || ||||||| |||||||||| |||   | ||| ||||||| || ||||||| |||| | ||||||    
T  18500781 gtcaatttcagagactaaagtgattaacagagtctaaattcagggactaaattgactaacagagtctacattcagggattaaattggctaatatagttta 18500682  T
Q  410 c 410  Q
    |    
T  18500681 c 18500681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 364
Target Start/End: Original strand, 8951097 - 8951170
Alignment:
Q  291 ttgaatgaagacttggttagtcaatttcagggactaaagtgactaacaaagtgtacattcaggaactaaattga 364  Q
    ||||||| |||||  ||| |||||||| ||  |||||| |||||||| |||| |||||| ||||||||||||||    
T  8951097 ttgaatgtagactcagttggtcaatttaagaaactaaaatgactaacgaagtctacattaaggaactaaattga 8951170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 1e-32; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 290 - 437
Target Start/End: Original strand, 39598583 - 39598730
Alignment:
Q  290 cttgaatgaagacttggttagtcaatttcagggactaaagtgactaacaaagtgtacattcaggaactaaattgattaatgaattctgcattcagagact 389  Q
    |||||||| |||||| |||||||||||| |||||||||||||||||||  ||| |||||||||| |||||||||| ||| | | | | ||||||| ||||    
T  39598583 cttgaatgtagactttgttagtcaattttagggactaaagtgactaacggagtctacattcagggactaaattgactaacggagtatacattcagcgact 39598682  T
Q  390 aaattgactaacagagtttacgttgagggactattttgcaatttatct 437  Q
    |||||||| |||| ||| ||| || |||||||||||||||||||||||    
T  39598683 aaattgaccaacaaagtctacattcagggactattttgcaatttatct 39598730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 310 - 437
Target Start/End: Original strand, 31499446 - 31499573
Alignment:
Q  310 gtcaatttcagggactaaagtgactaacaaagtgtacattcaggaactaaattgattaatgaattctgcattcagagactaaattgactaacagagttta 409  Q
    ||||||||||||||| |||||||| || ||||| |||||||| | |||||||||| ||| | | |||||||||||| |||||| ||||||||||| | ||    
T  31499446 gtcaatttcagggaccaaagtgacaaataaagtctacattcaaggactaaattgactaacggagtctgcattcagaaactaaaatgactaacagattcta 31499545  T
Q  410 cgttgagggactattttgcaatttatct 437  Q
    | || |||||||||||| ||||||||||    
T  31499546 cattcagggactattttacaatttatct 31499573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 310 - 437
Target Start/End: Complemental strand, 22093043 - 22092916
Alignment:
Q  310 gtcaatttcagggactaaagtgactaacaaagtgtacattcaggaactaaattgattaatgaattctgcattcagagactaaattgactaacagagttta 409  Q
    ||||| |||||||||||||||||| |||  ||| || ||||||| ||||||||||  |||| | |||||||||||  |||||| ||||||||||||| ||    
T  22093043 gtcaaattcagggactaaagtgacaaacggagtctatattcagggactaaattgacgaatggagtctgcattcaggaactaaactgactaacagagtcta 22092944  T
Q  410 cgttgagggactattttgcaatttatct 437  Q
    | || |||||||||||| ||||||||||    
T  22092943 cattcagggactattttacaatttatct 22092916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 306 - 437
Target Start/End: Complemental strand, 31820101 - 31819970
Alignment:
Q  306 gttagtcaatttcagggactaaagtgactaacaaagtgtacattcaggaactaaattgattaatgaattctgcattcagagactaaattgactaacagag 405  Q
    |||||||||||| |||||||||||||| ||||  ||| |||||||||  |||||||||| |||  || ||||||||||  |||||||| |||||||||||    
T  31820101 gttagtcaattttagggactaaagtgattaacggagtatacattcagagactaaattgactaagaaagtctgcattcaaggactaaatggactaacagag 31820002  T
Q  406 tttacgttgagggactattttgcaatttatct 437  Q
    | ||| || || ||||||||| ||||||||||    
T  31820001 tctacattcagtgactattttccaatttatct 31819970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 287 - 437
Target Start/End: Original strand, 24006953 - 24007103
Alignment:
Q  287 gtccttgaatgaagacttggttagtcaatttcagggactaaagtgactaacaaagtgtacattcaggaactaaattgattaatgaattctgcattcagag 386  Q
    |||| |||||| |||||  |||| |||||||||| ||||||| ||| ||||| ||| |||||||||| |||| |||||| || | | ||||||||||  |    
T  24006953 gtccctgaatgtagactctgttactcaatttcagagactaaaatgattaacagagtctacattcaggtactacattgatcaacggaatctgcattcatgg 24007052  T
Q  387 actaaattgactaacagagtttacgttgagggactattttgcaatttatct 437  Q
    |||||||||||||||||||| ||| || |  | ||||||| ||||||||||    
T  24007053 actaaattgactaacagagtctacattcaaagtctattttacaatttatct 24007103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 349 - 437
Target Start/End: Original strand, 32092862 - 32092950
Alignment:
Q  349 tcaggaactaaattgattaatgaattctgcattcagagactaaattgactaacagagtttacgttgagggactattttgcaatttatct 437  Q
    |||||||||||| ||| ||| ||| ||| ||||||| ||||||||||||||||||||| ||| || |||||||||||| ||||||||||    
T  32092862 tcaggaactaaagtgactaacgaagtctacattcagggactaaattgactaacagagtctacattcagggactatttttcaatttatct 32092950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 287 - 364
Target Start/End: Original strand, 32092832 - 32092909
Alignment:
Q  287 gtccttgaatgaagacttggttagtcaatttcagggactaaagtgactaacaaagtgtacattcaggaactaaattga 364  Q
    |||| |||||| |||||  ||| |||||| ||||| ||||||||||||||| |||| |||||||||| ||||||||||    
T  32092832 gtccctgaatgtagactctgtttgtcaatctcaggaactaaagtgactaacgaagtctacattcagggactaaattga 32092909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 328 - 435
Target Start/End: Complemental strand, 8219304 - 8219198
Alignment:
Q  328 agtgactaacaaagtgtacattcaggaactaaattgattaatgaattctgcattcagagactaaattgactaacagagtttacgttgagggactattttg 427  Q
    ||||||||||  |||  ||||||||| | |||||||| ||| | | |||||||||||| |||||||||||||||||||| ||| || |  |||||||||     
T  8219304 agtgactaacggagtccacattcagggattaaattgactaacggagtctgcattcagaaactaaattgactaacagagtctacattca-agactatttta 8219206  T
Q  428 caatttat 435  Q
    ||||||||    
T  8219205 caatttat 8219198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0407 (Bit Score: 67; Significance: 1e-29; HSPs: 4)
Name: scaffold0407
Description:

Target: scaffold0407; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 307 - 401
Target Start/End: Original strand, 928 - 1022
Alignment:
Q  307 ttagtcaatttcagggactaaagtgactaacaaagtgtacattcaggaactaaattgattaatgaattctgcattcagagactaaattgactaac 401  Q
    |||||||||||||||||||||||||||||||||||| |||||||||| | |||||||| ||| ||| ||||||||||| ||||||||||||||||    
T  928 ttagtcaatttcagggactaaagtgactaacaaagtctacattcagggattaaattgactaacgaagtctgcattcagggactaaattgactaac 1022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0407; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 307 - 401
Target Start/End: Original strand, 7392 - 7486
Alignment:
Q  307 ttagtcaatttcagggactaaagtgactaacaaagtgtacattcaggaactaaattgattaatgaattctgcattcagagactaaattgactaac 401  Q
    |||||||||||||||||||||||||||||||||||| |||||||||| | |||||||| ||| ||| ||||||||||| ||||||||||||||||    
T  7392 ttagtcaatttcagggactaaagtgactaacaaagtctacattcagggattaaattgactaacgaagtctgcattcagggactaaattgactaac 7486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0407; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 316 - 435
Target Start/End: Original strand, 969 - 1088
Alignment:
Q  316 ttcagggactaaagtgactaacaaagtgtacattcaggaactaaattgattaatgaattctgcattcagagactaaattgactaacagagtttacgttga 415  Q
    |||||||| |||| |||||||| |||| | |||||||| |||||||||| ||| ||| ||||||||||| ||||||||||| ||| | ||| |||||| |    
T  969 ttcagggattaaattgactaacgaagtctgcattcagggactaaattgactaacgaaatctgcattcagggactaaattgaataataaagtctacgttca 1068  T
Q  416 gggactattttgcaatttat 435  Q
    |||||||||||| |||||||    
T  1069 gggactattttgtaatttat 1088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0407; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 316 - 435
Target Start/End: Original strand, 7433 - 7552
Alignment:
Q  316 ttcagggactaaagtgactaacaaagtgtacattcaggaactaaattgattaatgaattctgcattcagagactaaattgactaacagagtttacgttga 415  Q
    |||||||| |||| |||||||| |||| | |||||||| |||||||||| ||| ||| ||||||||||| ||||||||||| ||| | ||| |||||| |    
T  7433 ttcagggattaaattgactaacgaagtctgcattcagggactaaattgactaacgaaatctgcattcagggactaaattgaataataaagtctacgttca 7532  T
Q  416 gggactattttgcaatttat 435  Q
    |||||||||||| |||||||    
T  7533 gggactattttgtaatttat 7552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 311 - 437
Target Start/End: Complemental strand, 13735627 - 13735501
Alignment:
Q  311 tcaatttcagggactaaagtgactaacaaagtgtacattcaggaactaaattgattaatgaattctgcattcagagactaaattgactaacagagtttac 410  Q
    |||||||||||||||||||||||||||  ||| |||||| |   |||||||||| ||| | | ||||||||||||||||||||||||||||||||| |||    
T  13735627 tcaatttcagggactaaagtgactaacggagtctacatttattgactaaattgactaacggagtctgcattcagagactaaattgactaacagagtctac 13735528  T
Q  411 gttgagggactattttgcaatttatct 437  Q
     ||| |||||||||||| |||||||||    
T  13735527 attgtgggactattttgtaatttatct 13735501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 287 - 437
Target Start/End: Complemental strand, 50335647 - 50335497
Alignment:
Q  287 gtccttgaatgaagacttggttagtcaatttcagggactaaagtgactaacaaagtgtacattcaggaactaaattgattaatgaattctgcattcagag 386  Q
    |||| |||||| |||||  ||| |||||||| |||||||||||||| || |  ||| |||||||||| ||||||||||  || | | ||||||||||| |    
T  50335647 gtccctgaatgtagactctgttggtcaattttagggactaaagtgattagcggagtctacattcagggactaaattgacgaacggagtctgcattcaggg 50335548  T
Q  387 actaaattgactaacagagtttacgttgagggactattttgcaatttatct 437  Q
    |||||||||||||||| ||| ||| || | |||||||||||||||||||||    
T  50335547 actaaattgactaacaaagtctacattcatggactattttgcaatttatct 50335497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 310 - 435
Target Start/End: Complemental strand, 37608155 - 37608030
Alignment:
Q  310 gtcaatttcagggactaaagtgactaacaaagtgtacattcaggaactaaattgattaatgaattctgcattcagagactaaattgactaacagagttta 409  Q
    ||||||||||||||| ||||||||||||  ||| |||||||| | |||||||||| |||   | ||||||||||  ||||||||||||||||||||| ||    
T  37608155 gtcaatttcagggaccaaagtgactaacggagtctacattcaaggactaaattgactaacagagtctgcattcaaggactaaattgactaacagagtcta 37608056  T
Q  410 cgttgagggactattttgcaatttat 435  Q
    | || | |||||||||||||||||||    
T  37608055 cattcaaggactattttgcaatttat 37608030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 310 - 437
Target Start/End: Original strand, 8097811 - 8097938
Alignment:
Q  310 gtcaatttcagggactaaagtgactaacaaagtgtacattcaggaactaaattgattaatgaattctgcattcagagactaaattgactaacagagttta 409  Q
    |||||||| | |||||||| ||||||||| ||| ||||||||||||||||||||| ||||| | | || |||||  ||||||||||||||||||| | ||    
T  8097811 gtcaattttaaggactaaaatgactaacagagtctacattcaggaactaaattgactaatggagtatgtattcaaggactaaattgactaacagaatcta 8097910  T
Q  410 cgttgagggactattttgcaatttatct 437  Q
      || | |||||||||||  ||||||||    
T  8097911 tattcatggactattttgtgatttatct 8097938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 369
Target Start/End: Original strand, 32374100 - 32374153
Alignment:
Q  316 ttcagggactaaagtgactaacaaagtgtacattcaggaactaaattgattaat 369  Q
    ||||||||||||| ||||||||| ||| | |||||||| |||||||||| ||||    
T  32374100 ttcagggactaaattgactaacagagtttgcattcagggactaaattgactaat 32374153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 310 - 358
Target Start/End: Complemental strand, 11633313 - 11633265
Alignment:
Q  310 gtcaatttcagggactaaagtgactaacaaagtgtacattcaggaacta 358  Q
    |||||||||| |||||||||||||||||| | | |||||||| ||||||    
T  11633313 gtcaatttcaaggactaaagtgactaacataatctacattcatgaacta 11633265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 378 - 422
Target Start/End: Original strand, 32374098 - 32374142
Alignment:
Q  378 cattcagagactaaattgactaacagagtttacgttgagggacta 422  Q
    ||||||| ||||||||||||||||||||||| | || ||||||||    
T  32374098 cattcagggactaaattgactaacagagtttgcattcagggacta 32374142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 3e-27; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 307 - 437
Target Start/End: Original strand, 41358775 - 41358905
Alignment:
Q  307 ttagtcaatttcagggactaaagtgactaacaaagtgtacattcaggaactaaattgattaatgaattctgcattcagagactaaattgactaacagagt 406  Q
    |||||||||||||| ||||||||||||||||||||| |||||||||  || ||| | |  ||| || ||||||||||  ||||||||||| |||||||||    
T  41358775 ttagtcaatttcagagactaaagtgactaacaaagtctacattcagagacaaaagtaacaaataaagtctgcattcatggactaaattgattaacagagt 41358874  T
Q  407 ttacgttgagggactattttgcaatttatct 437  Q
     ||| || |||||||||||||||||||||||    
T  41358875 ctacattcagggactattttgcaatttatct 41358905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 307 - 437
Target Start/End: Original strand, 4289018 - 4289148
Alignment:
Q  307 ttagtcaatttcagggactaaagtgactaacaaagtgtacattcaggaactaaattgattaatgaattctgcattcagagactaaattgactaacagagt 406  Q
    ||||||||||||||||| |||||||||||||| ||| ||||||||   ||||||||||||||   | |||||||| |||||||||||||||||||| |||    
T  4289018 ttagtcaatttcagggattaaagtgactaacagagtctacattcaaagactaaattgattaacatagtctgcatttagagactaaattgactaacatagt 4289117  T
Q  407 ttacgttgagggactattttgcaatttatct 437  Q
     | |||| |  ||||||||||||| ||||||    
T  4289118 ctgcgttcaaagactattttgcaacttatct 4289148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 287 - 437
Target Start/End: Original strand, 23976164 - 23976313
Alignment:
Q  287 gtccttgaatgaagacttggttagtcaatttcagggactaaagtgactaacaaagtgtacattcaggaactaaattgattaatgaattctgcattcagag 386  Q
    |||| |||||| |||||  |||||||||||||||||| ||||||||||||||   | ||||||||||  |||||||||  || | | ||||||||||| |    
T  23976164 gtccctgaatgtagactctgttagtcaatttcagggagtaaagtgactaacatgatctacattcaggggctaaattgaccaacggagtctgcattcaggg 23976263  T
Q  387 actaaattgactaacagagtttacgttgagggactattttgcaatttatct 437  Q
     ||||||||||||||||||  ||| || |||||||||||| ||||||||||    
T  23976264 gctaaattgactaacagag-ctacattcagggactattttacaatttatct 23976313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 287 - 403
Target Start/End: Complemental strand, 31254110 - 31253994
Alignment:
Q  287 gtccttgaatgaagacttggttagtcaatttcagggactaaagtgactaacaaagtgtacattcaggaactaaattgattaatgaattctgcattcagag 386  Q
    ||||||||||| |||||  ||| || ||||||||||| |||||||||||||||| | |||||| ||| |||||||||| |||   | ||||||||||| |    
T  31254110 gtccttgaatgtagactccgttggttaatttcagggattaaagtgactaacaaaatctacatttagggactaaattgactaacagagtctgcattcaggg 31254011  T
Q  387 actaaattgactaacag 403  Q
    |||||||||||||||||    
T  31254010 actaaattgactaacag 31253994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 320 - 437
Target Start/End: Complemental strand, 21124500 - 21124383
Alignment:
Q  320 gggactaaagtgactaacaaagtgtacattcaggaactaaattgattaatgaattctgcattcagagactaaattgactaacagagtttacgttgaggga 419  Q
    ||||||||| ||||||||  ||| |||| |  || |||||||||| ||| ||| ||||||||||| ||||||||||||||| ||||| ||| || || ||    
T  21124500 gggactaaattgactaacggagtctacactaggggactaaattgactaacgaagtctgcattcagggactaaattgactaatagagtctacatttagaga 21124401  T
Q  420 ctattttgcaatttatct 437  Q
    ||||||||||||||||||    
T  21124400 ctattttgcaatttatct 21124383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 287 - 402
Target Start/End: Original strand, 22326479 - 22326594
Alignment:
Q  287 gtccttgaatgaagacttggttagtcaatttcagggactaaagtgactaacaaagtgtacattcaggaactaaattgattaatgaattctgcattcagag 386  Q
    ||||||||||| |||||   || |||||||| |||||||||||||| ||||  | | |||||||||||||||||| |  ||| ||| |||||||||||||    
T  22326479 gtccttgaatgtagactctattggtcaattttagggactaaagtgattaacggaatctacattcaggaactaaataggctaacgaaatctgcattcagag 22326578  T
Q  387 actaaattgactaaca 402  Q
    |||||||||| |||||    
T  22326579 actaaattgattaaca 22326594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 287 - 437
Target Start/End: Original strand, 25149311 - 25149461
Alignment:
Q  287 gtccttgaatgaagacttggttagtcaatttcagggactaaagtgactaacaaagtgtacattcaggaactaaattgattaatgaattctgcattcagag 386  Q
    |||| |||||| |||||  ||| |||||||||| ||||||||||||| |||   || ||| |||||| ||||| |||| |||   | |||||||||||||    
T  25149311 gtccctgaatgtagactctgttggtcaatttcaaggactaaagtgacgaacggtgtctacgttcagggactaacttgactaacagagtctgcattcagag 25149410  T
Q  387 actaaattgactaacagagtttacgttgagggactattttgcaatttatct 437  Q
    |||||||||||||||| ||| ||| || || || ||||||||| |||||||    
T  25149411 actaaattgactaacaaagtctacattcagagattattttgcagtttatct 25149461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 310 - 435
Target Start/End: Complemental strand, 35202782 - 35202656
Alignment:
Q  310 gtcaatttcagggactaaagtgactaacaaagtgtacattcagga-actaaattgattaatgaattctgcattcagagactaaattgactaacagagttt 408  Q
    |||||||||||| |||||||||||||||  ||| ||||||||||  |||||||||| |||   | |||||||||||  |||||||||||||||| ||| |    
T  35202782 gtcaatttcaggaactaaagtgactaacggagtctacattcaggggactaaattgactaacagaatctgcattcaggaactaaattgactaacatagtct 35202683  T
Q  409 acgttgagggactattttgcaatttat 435  Q
    || || | |||| ||||||||||||||    
T  35202682 acatttaaggaccattttgcaatttat 35202656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 310 - 437
Target Start/End: Complemental strand, 18324180 - 18324053
Alignment:
Q  310 gtcaatttcagggactaaagtgactaacaaagtgtacattcaggaactaaattgattaatgaattctgcattcagagactaaattgactaacagagttta 409  Q
    |||||||||| | |||||||||||||||  ||| |||||| | | |||||||||| ||| | | | |||||||||  |||||||||||||| | ||| ||    
T  18324180 gtcaatttcatgaactaaagtgactaacggagtctacatttaaggactaaattgactaacggagtttgcattcaggaactaaattgactaataaagtcta 18324081  T
Q  410 cgttgagggactattttgcaatttatct 437  Q
    | || |||||||||||| ||||||||||    
T  18324080 cattcagggactattttacaatttatct 18324053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 310 - 437
Target Start/End: Original strand, 37543888 - 37544015
Alignment:
Q  310 gtcaatttcagggactaaagtgactaacaaagtgtacattcaggaactaaattgattaatgaattctgcattcagagactaaattgactaacagagttta 409  Q
    |||||||||| |||||||||||| ||||  ||| || ||||||| |||||||| | ||| | | ||||||||||| || |||||||||||||| ||| ||    
T  37543888 gtcaatttcatggactaaagtgattaacggagtctatattcagggactaaattaactaacggaatctgcattcagggattaaattgactaacaaagtcta 37543987  T
Q  410 cgttgagggactattttgcaatttatct 437  Q
    |  | |  ||||||||||||||||||||    
T  37543988 caatcaatgactattttgcaatttatct 37544015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 287 - 437
Target Start/End: Original strand, 22469506 - 22469655
Alignment:
Q  287 gtccttgaatgaagacttggttagtcaatttcagggactaaagtgactaacaaagtgtacattcaggaactaaattgattaatgaattctgcattcagag 386  Q
    |||| |||||| |||||  ||| |||||||||||||| ||| |||||||||  ||| || ||||||| |||||||||| ||||| | | || |||||| |    
T  22469506 gtccctgaatgcagactctgttggtcaatttcagggattaaggtgactaacggagttta-attcagggactaaattgactaatggagtttgaattcaggg 22469604  T
Q  387 actaaattgactaacagagtttacgttgagggactattttgcaatttatct 437  Q
    | |||||||||||||||| | ||| ||  || |||||||| ||||||||||    
T  22469605 attaaattgactaacagaatctacattctggaactattttacaatttatct 22469655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 339 - 427
Target Start/End: Original strand, 29585575 - 29585663
Alignment:
Q  339 aagtgtacattcaggaactaaattgattaatgaattctgcattcagagactaaattgactaacagagtttacgttgagggactattttg 427  Q
    |||| |||||||||| |||||||||| |||  || ||||||||||| ||||||||||| ||||| ||| ||| || |||||||||||||    
T  29585575 aagtctacattcagggactaaattgactaacaaagtctgcattcagggactaaattgaataacaaagtctacattcagggactattttg 29585663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 378 - 436
Target Start/End: Complemental strand, 22426961 - 22426903
Alignment:
Q  378 cattcagagactaaattgactaacagagtttacgttgagggactattttgcaatttatc 436  Q
    ||||||| ||||||||||||||||||||  ||| || ||||||||||||||||||||||    
T  22426961 cattcagggactaaattgactaacagagactacattcagggactattttgcaatttatc 22426903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 357 - 437
Target Start/End: Complemental strand, 21184434 - 21184355
Alignment:
Q  357 taaattgattaatgaattctgcattcagagactaaattgactaacagagtttacgttgagggactattttgcaatttatct 437  Q
    |||||||||||| | | |||| |||||| ||||||||||||||| | ||||||  || |||||||||||||||||||||||    
T  21184434 taaattgattaacggagtctgtattcagggactaaattgactaata-agtttatattcagggactattttgcaatttatct 21184355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 310 - 361
Target Start/End: Complemental strand, 21185845 - 21185794
Alignment:
Q  310 gtcaatttcagggactaaagtgactaacaaagtgtacattcaggaactaaat 361  Q
    |||||||||| |||||||||||||||||  |||||||||||||| |||||||    
T  21185845 gtcaatttcatggactaaagtgactaactgagtgtacattcaggtactaaat 21185794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 316 - 390
Target Start/End: Original strand, 29585584 - 29585658
Alignment:
Q  316 ttcagggactaaagtgactaacaaagtgtacattcaggaactaaattgattaatgaattctgcattcagagacta 390  Q
    ||||||||||||| ||||||||||||| | |||||||| |||||||||| |||  || ||| ||||||| |||||    
T  29585584 ttcagggactaaattgactaacaaagtctgcattcagggactaaattgaataacaaagtctacattcagggacta 29585658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 359 - 404
Target Start/End: Original strand, 37494422 - 37494467
Alignment:
Q  359 aattgattaatgaattctgcattcagagactaaattgactaacaga 404  Q
    |||||| ||||||| ||||||||||| |||||||||||||||||||    
T  37494422 aattgactaatgaagtctgcattcagggactaaattgactaacaga 37494467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 8e-25; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 292 - 437
Target Start/End: Complemental strand, 48755529 - 48755383
Alignment:
Q  292 tgaatgaagacttggttagtcaatttcagggactaaagtgactaacaa-agtgtacattcaggaactaaattgattaatgaattctgcattcagagacta 390  Q
    |||||| |||||  ||| |||||||||||||   |||||||||||||  ||| |||||||| | |||||||||| ||| | | ||||||||||| |||||    
T  48755529 tgaatgtagactctgttggtcaatttcaggggtcaaagtgactaacacgagtctacattcatggactaaattgactaacggagtctgcattcagggacta 48755430  T
Q  391 aattgactaacagagtttacgttgagggactattttgcaatttatct 437  Q
    |||||||||||||||| ||| || |||||||||||||||| ||||||    
T  48755429 aattgactaacagagtctacattcagggactattttgcaacttatct 48755383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 299 - 422
Target Start/End: Complemental strand, 15031414 - 15031291
Alignment:
Q  299 agacttggttagtcaatttcagggactaaagtgactaacaaagtgtacattcaggaactaaattgattaatgaattctgcattcagagactaaattgact 398  Q
    |||||| ||| ||||||||||||||||||||||||||||  ||| |||||||||  |||||||||| ||| | | ||| ||||||| |||||||||||||    
T  15031414 agactttgttggtcaatttcagggactaaagtgactaacggagtctacattcagtgactaaattgactaacggagtctacattcagtgactaaattgact 15031315  T
Q  399 aacagagtttacgttgagggacta 422  Q
    ||| |||||| | || ||||||||    
T  15031314 aacggagtttgcattcagggacta 15031291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 287 - 428
Target Start/End: Original strand, 14434713 - 14434854
Alignment:
Q  287 gtccttgaatgaagacttggttagtcaatttcagggactaaagtgactaacaaagtgtacattcaggaactaaattgatta-atgaattctgcattcaga 385  Q
    ||||||||||| |||||| |||||| ||||||||||||||||||||||| |  ||| |||||||||  |||||||| | ||  ||| || |||||||||     
T  14434713 gtccttgaatgtagactttgttagttaatttcagggactaaagtgactagcggagtctacattcagagactaaattaactatctgagtt-tgcattcagg 14434811  T
Q  386 gactaaattgactaacagagtttacgttgagggactattttgc 428  Q
    ||||||||||||||||||||| ||| || | ||||||||||||    
T  14434812 gactaaattgactaacagagtctacattcatggactattttgc 14434854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 316 - 437
Target Start/End: Complemental strand, 15031365 - 15031244
Alignment:
Q  316 ttcagggactaaagtgactaacaaagtgtacattcaggaactaaattgattaatgaattctgcattcagagactaaattgactaacagagtttacgttga 415  Q
    ||||| ||||||| ||||||||  ||| |||||||||  |||||||||| ||| | | | ||||||||| ||||||||||||||||||||| ||| || |    
T  15031365 ttcagtgactaaattgactaacggagtctacattcagtgactaaattgactaacggagtttgcattcagggactaaattgactaacagagtctacattca 15031266  T
Q  416 gggactattttgcaatttatct 437  Q
    ||||||||||| ||||||||||    
T  15031265 gggactattttacaatttatct 15031244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 310 - 437
Target Start/End: Original strand, 11989141 - 11989268
Alignment:
Q  310 gtcaatttcagggactaaagtgactaacaaagtgtacattcaggaactaaattgattaatgaattctgcattcagagactaaattgactaacagagttta 409  Q
    ||||||||||| |||||||||| |||||  ||| |||||| | | |||||||||||||| | | ||||||||||| ||||| ||||||||||||||| ||    
T  11989141 gtcaatttcagagactaaagtggctaacggagtctacatttaaggactaaattgattaacggagtctgcattcagggactagattgactaacagagtcta 11989240  T
Q  410 cgttgagggactattttgcaatttatct 437  Q
    |    || ||||||||||||||||||||    
T  11989241 caactagagactattttgcaatttatct 11989268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 306 - 437
Target Start/End: Original strand, 18445497 - 18445628
Alignment:
Q  306 gttagtcaatttcagggactaaagtgactaacaaagtgtacattcaggaactaaattgattaatgaattctgcattcagagactaaattgactaacagag 405  Q
    |||||||||||||| ||| ||| |||||||||  ||| || |||| || | |||||||||||| ||| |||||||||||| ||||| |||||||||| ||    
T  18445497 gttagtcaatttcaaggattaatgtgactaactgagtctaaattctgggattaaattgattaacgaagtctgcattcagatactaagttgactaacatag 18445596  T
Q  406 tttacgttgagggactattttgcaatttatct 437  Q
    | ||| || ||  |||||||||||||||||||    
T  18445597 tatacattcagaaactattttgcaatttatct 18445628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 310 - 437
Target Start/End: Complemental strand, 21514927 - 21514800
Alignment:
Q  310 gtcaatttcagggactaaagtgactaacaaagtgtacattcaggaactaaattgattaatgaattctgcattcagagactaaattgactaacagagttta 409  Q
    |||||||||| ||| |||||| ||||||| |||  ||||||| | |||||||||| ||| ||| || |||||||| ||||||||| ||||||||||| ||    
T  21514927 gtcaatttcatggattaaagtaactaacagagtccacattcaaggactaaattgactaacgaagtccgcattcagggactaaattaactaacagagtcta 21514828  T
Q  410 cgttgagggactattttgcaatttatct 437  Q
    | || | |||||||||| ||||||||||    
T  21514827 cattcaaggactattttacaatttatct 21514800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 310 - 437
Target Start/End: Original strand, 43562696 - 43562823
Alignment:
Q  310 gtcaatttcagggactaaagtgactaacaaagtgtacattcaggaactaaattgattaatgaattctgcattcagagactaaattgactaacagagttta 409  Q
    |||||||| || |||||||||||||||| | || |||||||||| | |||||||| ||||||| ||||||||||  || ||||||||| |||||| | ||    
T  43562696 gtcaattttagagactaaagtgactaacgatgtctacattcagggattaaattgactaatgaagtctgcattcaacgattaaattgacaaacagaatcta 43562795  T
Q  410 cgttgagggactattttgcaatttatct 437  Q
    | || | |||||||||| ||||||||||    
T  43562796 cattcaaggactattttacaatttatct 43562823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 294 - 431
Target Start/End: Complemental strand, 44968054 - 44967917
Alignment:
Q  294 aatgaagacttggttagtcaatttcagggactaaagtgactaacaaagtgtacattcaggaactaaattgattaatgaattctgcattcagagactaaat 393  Q
    |||| |||||| ||| |||||||||||||| |||||||||||| | ||| ||||||||   |||||||||| |||||   |||| ||| |||||||||||    
T  44968054 aatgtagactttgttggtcaatttcagggattaaagtgactaagagagtctacattcaaagactaaattgactaatggggtctgtattgagagactaaat 44967955  T
Q  394 tgactaacagagtttacgttgagggactattttgcaat 431  Q
    ||||||||||||| ||| || |   |||||||||||||    
T  44967954 tgactaacagagtctacattcaaaaactattttgcaat 44967917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 310 - 426
Target Start/End: Complemental strand, 15005141 - 15005025
Alignment:
Q  310 gtcaatttcagggactaaagtgactaacaaagtgtacattcaggaactaaattgattaatgaattctgcattcagagactaaattgactaacagagttta 409  Q
    |||||||||||||| | |||||||||||||||| |||||||| | |||||||| | |||   | ||||||||||| || |||||||||||||||||| ||    
T  15005141 gtcaatttcagggatttaagtgactaacaaagtatacattcaaggactaaattaactaactgagtctgcattcagggattaaattgactaacagagtcta 15005042  T
Q  410 cgttgagggactatttt 426  Q
    | || | ||||||||||    
T  15005041 cattcaaggactatttt 15005025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 287 - 390
Target Start/End: Complemental strand, 20759133 - 20759030
Alignment:
Q  287 gtccttgaatgaagacttggttagtcaatttcagggactaaagtgactaacaaagtgtacattcaggaactaaattgattaatgaattctgcattcagag 386  Q
    ||||||||||| |||||| ||||||||||||||||||||||||||||||||| ||| ||   ||||| |||||||||| ||||  | |||  ||||||||    
T  20759133 gtccttgaatgtagactttgttagtcaatttcagggactaaagtgactaacatagtctattctcagggactaaattgactaatagagtctatattcagag 20759034  T
Q  387 acta 390  Q
    ||||    
T  20759033 acta 20759030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 328 - 437
Target Start/End: Complemental strand, 1426649 - 1426540
Alignment:
Q  328 agtgactaacaaagtgtacattcaggaactaaattgattaatgaattctgcattcagagactaaattgactaacagagtttacgttgagggactattttg 427  Q
    ||||||||||  ||| |||||| ||| |||||||||| ||| | | ||||||||||| ||||||||||||||||| | | ||| || ||| |||||||||    
T  1426649 agtgactaacggagtctacatttagggactaaattgactaacggagtctgcattcagggactaaattgactaacataatctacattcaggaactattttg 1426550  T
Q  428 caatttatct 437  Q
    ||||||||||    
T  1426549 caatttatct 1426540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 310 - 437
Target Start/End: Complemental strand, 33343187 - 33343062
Alignment:
Q  310 gtcaatttcagggactaaagtgactaacaaagtgtacattcaggaactaaattgattaatgaattctgcattcagagactaaattgactaacagagttta 409  Q
    |||||||||||| |||||| ||| ||||||||| |||||||||| |||||||||| |||   | | ||||||||| |||||| |||||||||| ||| ||    
T  33343187 gtcaatttcaggaactaaa-tgattaacaaagtctacattcagggactaaattgactaacatagtttgcattcagggactaa-ttgactaacatagtcta 33343090  T
Q  410 cgttgagggactattttgcaatttatct 437  Q
    | || |||||| |||| |||||||||||    
T  33343089 cattcagggaccatttagcaatttatct 33343062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 306 - 402
Target Start/End: Complemental strand, 36383185 - 36383089
Alignment:
Q  306 gttagtcaatttcagggactaaagtgactaacaaagtgtacattcaggaactaaattgattaatgaattctgcattcagagactaaattgactaaca 402  Q
    |||||||||||| ||||||||||||||||||| |||| || ||||||  ||||||||||  ||  || ||||||||||  || ||||||||||||||    
T  36383185 gttagtcaattttagggactaaagtgactaacgaagtctatattcagagactaaattgaccaacaaagtctgcattcaaggattaaattgactaaca 36383089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 292 - 364
Target Start/End: Complemental strand, 38498304 - 38498232
Alignment:
Q  292 tgaatgaagacttggttagtcaatttcagggactaaagtgactaacaaagtgtacattcaggaactaaattga 364  Q
    |||||| |||||| |||||| ||||| |||||||||||||||||| | ||| |||||||||| ||||||||||    
T  38498304 tgaatgtagactttgttagttaattttagggactaaagtgactaatagagtctacattcagggactaaattga 38498232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 376 - 437
Target Start/End: Original strand, 26498678 - 26498739
Alignment:
Q  376 tgcattcagagactaaattgactaacagagtttacgttgagggactattttgcaatttatct 437  Q
    ||||||||| |||||||||||||||| |||| ||| || | |||||||||||||||||||||    
T  26498678 tgcattcagtgactaaattgactaaccgagtctacattcatggactattttgcaatttatct 26498739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 387 - 435
Target Start/End: Complemental strand, 42453149 - 42453101
Alignment:
Q  387 actaaattgactaacagagtttacgttgagggactattttgcaatttat 435  Q
    |||||||||||||||||||| ||| || |||||||||||||||||||||    
T  42453149 actaaattgactaacagagtctacatttagggactattttgcaatttat 42453101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 378 - 437
Target Start/End: Complemental strand, 38498250 - 38498191
Alignment:
Q  378 cattcagagactaaattgactaacagagtttacgttgagggactattttgcaatttatct 437  Q
    ||||||| ||||||||||||||||| ||||||  || | |||||||||||||||||||||    
T  38498250 cattcagggactaaattgactaacaaagtttatatttatggactattttgcaatttatct 38498191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 310 - 364
Target Start/End: Original strand, 26498644 - 26498698
Alignment:
Q  310 gtcaatttcagggactaaagtgactaacaaagtgtacattcaggaactaaattga 364  Q
    ||||||||||||||||||||||||||||  ||| | |||||||  ||||||||||    
T  26498644 gtcaatttcagggactaaagtgactaacggagtatgcattcagtgactaaattga 26498698  T

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Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 435
Target Start/End: Complemental strand, 26920358 - 26920213
Alignment:
Q  290 cttgaatgaagacttggttagtcaatttcagggactaaagtgactaacaaagtgtacattcaggaactaaattgattaatgaattctgcattcagagact 389  Q
    |||||||| | |||| |||  ||||||||||||| ||||||||||||   ||  |||||| | | |||||||||| ||| ||| | | |||| ||  |||    
T  26920358 cttgaatgtatactttgttgatcaatttcagggattaaagtgactaatggagcctacatttaaggactaaattgactaacgaagtatacattgaggaact 26920259  T
Q  390 aaattgactaacagagtttacgttgagggactattttgcaatttat 435  Q
    ||||| ||||| ||||| ||  || || ||||||||||||||||||    
T  26920258 aaattaactaatagagtctatatttagagactattttgcaatttat 26920213  T

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Target: scaffold0026 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 306 - 437
Target Start/End: Complemental strand, 57636 - 57505
Alignment:
Q  306 gttagtcaatttcagggactaaagtgactaacaaagtgtacattcaggaactaaattgattaatgaattctgcattcagagactaaattgactaacagag 405  Q
    |||||||||||||| ||| ||| |||||||||  ||| || ||||||| |||||||||||||| ||| |||||||||||| ||||| |||||||||| ||    
T  57636 gttagtcaatttcaaggattaatgtgactaactgagtctaaattcagggactaaattgattaacgaagtctgcattcagatactaagttgactaacatag 57537  T
Q  406 tttacgttgagggactattttgcaatttatct 437  Q
    | ||| || ||  |||||||| ||||||||||    
T  57536 tatacattcagaaactatttttcaatttatct 57505  T

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Target: scaffold0024 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 306 - 437
Target Start/End: Complemental strand, 127991 - 127860
Alignment:
Q  306 gttagtcaatttcagggactaaagtgactaacaaagtgtacattcaggaactaaattgattaatgaattctgcattcagagactaaattgactaacagag 405  Q
    |||||||||||||| ||| ||| |||||||||  ||| || |||| || | |||||||||||| ||| |||||||||||| ||||| |||||||||| ||    
T  127991 gttagtcaatttcaaggattaatgtgactaactgagtctaaattctgggattaaattgattaacgaagtctgcattcagatactaagttgactaacatag 127892  T
Q  406 tttacgttgagggactattttgcaatttatct 437  Q
    | ||| || ||  |||||||||||||||||||    
T  127891 tatacattcagaaactattttgcaatttatct 127860  T

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Target: scaffold0066 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 296 - 437
Target Start/End: Complemental strand, 15562 - 15421
Alignment:
Q  296 tgaagacttggttagtcaatttcagggactaaagtgactaacaaagtgtacattcaggaactaaattgattaatgaattctgcattcagagactaaattg 395  Q
    |||| |||| |||||||||||||||| ||||||  |||| ||| | | |||||||||  |||||||||  ||| | | ||| |||||||||| |||||||    
T  15562 tgaatactttgttagtcaatttcaggtactaaaacgactgacagaatctacattcagagactaaattggctaacggagtctacattcagagattaaattg 15463  T
Q  396 actaacagagtttacgttgagggactattttgcaatttatct 437  Q
    ||||||||||| ||| || || ||||||||| ||||||||||    
T  15462 actaacagagtctacattcagagactattttacaatttatct 15421  T

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Target: scaffold1300 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold1300
Description:

Target: scaffold1300; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 287 - 402
Target Start/End: Complemental strand, 1556 - 1441
Alignment:
Q  287 gtccttgaatgaagacttggttagtcaatttcagggactaaagtgactaacaaagtgtacattcaggaactaaattgattaatgaattctgcattcagag 386  Q
    ||||||||| | |||||  |||||||||||||| ||| ||| ||||||||   ||| |||||||||| |||||||| | ||| ||| |||||||||||||    
T  1556 gtccttgaacgtagactctgttagtcaatttcaaggattaatgtgactaattgagtctacattcagggactaaattaactaacgaagtctgcattcagag 1457  T
Q  387 actaaattgactaaca 402  Q
    ||||| |||| |||||    
T  1456 actaagttgattaaca 1441  T

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Target: scaffold0102 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 310 - 437
Target Start/End: Complemental strand, 24075 - 23948
Alignment:
Q  310 gtcaatttcagggactaaagtgactaacaaagtgtacattcaggaactaaattgattaatgaattctgcattcagagactaaattgactaacagagttta 409  Q
    |||||||||| |||| |||||||| || ||||| |||||||| | ||||||||||  ||   | ||||||||||| ||||||||||||||||  ||| ||    
T  24075 gtcaatttcatggacaaaagtgacgaataaagtctacattcaaggactaaattgaccaacagagtctgcattcagggactaaattgactaacgtagtcta 23976  T
Q  410 cgttgagggactattttgcaatttatct 437  Q
    | ||  ||||| ||||||||||||||||    
T  23975 cattcggggaccattttgcaatttatct 23948  T

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Target: scaffold0018 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 310 - 364
Target Start/End: Complemental strand, 72065 - 72011
Alignment:
Q  310 gtcaatttcagggactaaagtgactaacaaagtgtacattcaggaactaaattga 364  Q
    ||||||||||||||||||| ||||||||||||| | |||||||| ||||||||||    
T  72065 gtcaatttcagggactaaattgactaacaaagtttgcattcagggactaaattga 72011  T

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Target: scaffold0011 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 292 - 437
Target Start/End: Original strand, 190256 - 190401
Alignment:
Q  292 tgaatgaagacttggttagtcaatttcagggactaaagtgactaacaaagtgtacattcaggaactaaattgattaatgaattctgcattcagagactaa 391  Q
    |||||| |||||  ||| |||||||||||||| |||| ||| ||||| ||| |||||| ||| |||||||||| |||   | |||| ||||||  |||||    
T  190256 tgaatgtagactctgttggtcaatttcagggattaaattgattaacatagtttacatttagggactaaattgactaacagagtctgtattcaggaactaa 190355  T
Q  392 attgactaacagagtttacgttgagggactattttgcaatttatct 437  Q
    ||||||||||| ||| |   || ||  |||||||||||||||||||    
T  190356 attgactaacaaagtctgtatttagaaactattttgcaatttatct 190401  T

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Target: scaffold0049 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 292 - 364
Target Start/End: Original strand, 59783 - 59855
Alignment:
Q  292 tgaatgaagacttggttagtcaatttcagggactaaagtgactaacaaagtgtacattcaggaactaaattga 364  Q
    |||||| |||||  ||||||||||||||||||||||| ||||||||  ||| | |||||||| ||||||||||    
T  59783 tgaatgtagactctgttagtcaatttcagggactaaattgactaacggagtctgcattcagggactaaattga 59855  T

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Target: scaffold0039 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 310 - 364
Target Start/End: Original strand, 27585 - 27639
Alignment:
Q  310 gtcaatttcagggactaaagtgactaacaaagtgtacattcaggaactaaattga 364  Q
    |||||||||| ||||||||||||| ||| |||| |||||||||||| ||||||||    
T  27585 gtcaatttcaaggactaaagtgacgaacgaagtctacattcaggaagtaaattga 27639  T

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Target: scaffold0047 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 378 - 437
Target Start/End: Complemental strand, 11720 - 11661
Alignment:
Q  378 cattcagagactaaattgactaacagagtttacgttgagggactattttgcaatttatct 437  Q
    |||||||||| ||||||| |||||| ||| ||| || |||||||||||| ||||||||||    
T  11720 cattcagagattaaattgcctaacatagtctacattcagggactattttacaatttatct 11661  T

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Target: scaffold0047; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 307 - 352
Target Start/End: Complemental strand, 11759 - 11714
Alignment:
Q  307 ttagtcaatttcagggactaaagtgactaacaaagtgtacattcag 352  Q
    ||||||||||| |||||||||||||||||||| | | |||||||||    
T  11759 ttagtcaattttagggactaaagtgactaacagaatatacattcag 11714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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