View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11870_high_19 (Length: 395)
Name: NF11870_high_19
Description: NF11870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11870_high_19 |
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Alignment Details
Target: chr4 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 383
Target Start/End: Original strand, 31549868 - 31550250
Alignment:
| Q |
1 |
ttatacatttcattgagcgaggatatctgcagaaatccatcaatgaagacaataattaatattagtttaattcctgcaatgattggaagaagnnnnnnnn |
100 |
Q |
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| T |
31549868 |
ttatacatttcattgagcgaggatatctgcagaaatccatcaatgaagacaataattaatattagtttaattcctgcaatgattggaagaagaaaaaaaa |
31549967 |
T |
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| Q |
101 |
ggtggaaaggagttcattgaactagaattatactgttattttaccttctgatttgcactttgaatctctcgttcagcttttccgaggtcctcggaaagag |
200 |
Q |
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| T |
31549968 |
ggtggaaaggagttcattgaactagaattatactgttattttaccttctgatttgcactttgaatctctcgttcagcttttccgaggtcctcggaaagag |
31550067 |
T |
|
| Q |
201 |
tagtatgtgacctctcaatatccagccttgcttctctctctttagaaagagattccactgcagccttgtgtttacaaagatattttcatagcttattatg |
300 |
Q |
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| T |
31550068 |
tagtatgtgacctctcaatatccagccttgcttctctctctttagaaagagattccactgcagccttgtgtttacaaagatattttcaaagcttattatg |
31550167 |
T |
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| Q |
301 |
attgacatttgctttcannnnnnnnnnnccaaaatttaaaaggcaaaaaagacttcaaaatatttcttaccgacttctctgct |
383 |
Q |
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| T |
31550168 |
attgacatttcctttcatttttttttttccaaaatttaaaaggcaaaaaagacttcaaaatatttcttaccgacttctctgct |
31550250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 136 - 282
Target Start/End: Complemental strand, 34649305 - 34649159
Alignment:
| Q |
136 |
ttattttaccttctgatttgcactttgaatctctcgttcagcttttccgaggtcctcggaaagagtagtatgtgacctctcaatatccagccttgcttct |
235 |
Q |
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| T |
34649305 |
ttattataccttctgatttgcagtttcaagctcacgttgagctctaccgagatcttctgatagtgttgtctgcgacctttcaaagtcaagcctagcctct |
34649206 |
T |
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| Q |
236 |
ctctctttagaaagagattccactgcagccttgtgtttacaaagata |
282 |
Q |
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|| |||||| ||||||||||| ||||||||||||||| ||||||| |
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| T |
34649205 |
ctttctttaataagagattccattgcagccttgtgtttcaaaagata |
34649159 |
T |
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