View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11870_high_24 (Length: 364)
Name: NF11870_high_24
Description: NF11870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11870_high_24 |
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Alignment Details
Target: chr2 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 345
Target Start/End: Complemental strand, 2511021 - 2510677
Alignment:
| Q |
1 |
acaatcgtcgcgaagtcactttgtctttactctgcgaattagtggtgttaatgaggtgctgctctttgatataatgctatattttctgttcttttgtcaa |
100 |
Q |
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| T |
2511021 |
acaatcgtcgcgaagtcactttgtctttactctgcgaattagtggtgttaatgaggtactgctctttgatataatgctatattttctgttcttttgtcaa |
2510922 |
T |
|
| Q |
101 |
ctgtctcctgatttacttttgtctggtttgtagaacaccgaacaacaggttcaaggtgtgctaaacctgatagatcttgctggaagtgaaaggctgtcga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2510921 |
ctgtctcctgatttacttttgtctggtttgtagaacactgaacaacaggttcaaggtgtgctaaacctgatagatcttgctggaagtgaaaggctgtcga |
2510822 |
T |
|
| Q |
201 |
aaagtggagcaactggggaccgcctgaatgaaactaaggtgtccttgattttcattgttataacttgagttctatgctgataaaatagttccattaatca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2510821 |
aaagtggagcaactggggaccgcctgaatgaaactaaggtgtccttgattttcattgttataacttgagttctatgctgataaaatagttccattaatca |
2510722 |
T |
|
| Q |
301 |
actagtaataaatgtttgctatatatgtctgtcaggcgataaaca |
345 |
Q |
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| T |
2510721 |
actagtaataaatgtttgctatatatgtctgtcaggcgataaaca |
2510677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 192
Target Start/End: Original strand, 36581584 - 36581654
Alignment:
| Q |
122 |
tctggtttgtagaacaccgaacaacaggttcaaggtgtgctaaacctgatagatcttgctggaagtgaaag |
192 |
Q |
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|||| |||| ||||||| |||||||| || |||||||| |||||||||| ||| | |||||||||||||| |
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| T |
36581584 |
tctgttttgcagaacactgaacaacaagtacaaggtgtcttaaacctgattgatttggctggaagtgaaag |
36581654 |
T |
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