View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11870_high_25 (Length: 360)
Name: NF11870_high_25
Description: NF11870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11870_high_25 |
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Alignment Details
Target: chr4 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 5 - 344
Target Start/End: Complemental strand, 51532754 - 51532415
Alignment:
| Q |
5 |
aatgttattaacaccaaaactctttgatccgatccgtgagtatgatgatgatgcatgaattaatgctagaggcgaaacagagagtttaaaattcacacac |
104 |
Q |
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| T |
51532754 |
aatgttattaacaccaaaactctttgatccgatccgtgagtatgatgatgatgcatgaattaatgctagaggcgaaacagagagtttaaaattcacacac |
51532655 |
T |
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| Q |
105 |
acaatgaaaagcatgttgaagatcatatacagaataaaagaactgaatatatctaataatcaagtacttattaataaattggggttaataataacccgtc |
204 |
Q |
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| T |
51532654 |
acaatgaaaagcatgttgaagatcatatacagaataaaagaactgaaaatatctaataatcaagtacttattaataaattggggttaataataacccgtc |
51532555 |
T |
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| Q |
205 |
tccgttttaattttacatagtttttctttgatacaataccaagaactgttatgaattgccacttgtttaatcactaaatacagtattatactgagacata |
304 |
Q |
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| T |
51532554 |
tccgttttaattttacatagtttttctttgatacaataccaagaactgttatgaattcccacttgtttaatcactaaatacagtattatactgagacata |
51532455 |
T |
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| Q |
305 |
catggttttaagttaaatttactttacactgtcaaacctg |
344 |
Q |
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| T |
51532454 |
catggttttaagttaaatttactttacactgtcaaacctg |
51532415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 184 - 308
Target Start/End: Complemental strand, 51526837 - 51526711
Alignment:
| Q |
184 |
tggggttaataataacccgtctccgttttaattttacatagtttttctttgatacaataccaagaactgttatgaatt---gccacttgtttaatcacta |
280 |
Q |
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| T |
51526837 |
tggggttaacagtaacccgtgtcc-ttttgcttttacatactttttctttgatacaataccaagaaccgttgtgaattacaacaactcttttaatcacta |
51526739 |
T |
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| Q |
281 |
aatacagtattatactgagacatacatg |
308 |
Q |
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| T |
51526738 |
aatacaatattatatttagacatacatg |
51526711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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