View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11870_high_29 (Length: 314)
Name: NF11870_high_29
Description: NF11870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11870_high_29 |
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Alignment Details
Target: chr2 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 19 - 303
Target Start/End: Original strand, 7791300 - 7791578
Alignment:
| Q |
19 |
caattggtccttgttcagttgagctgaactcacaatgatcataaaagataatagtttgtatttatccgagtgatcatagtttaattgacaaatatattac |
118 |
Q |
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| T |
7791300 |
caattggtccttgctcagttgagctgaactcacagtgatcataaaaaataataatttgtatttatccgagtgatcatagtttaatcaacaaatatattac |
7791399 |
T |
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| Q |
119 |
atataacatgtggaagtctgatatggactttaaacatctca---cttattcatcttatgatatgaatgaaaatctaaccatcacactattttgatnnnnn |
215 |
Q |
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| T |
7791400 |
atataacat---gaagtctgatatggactttaaacatctcatttattattcatcttatgatatgaat----atctaaccatcacacta-tttgat-aaaa |
7791490 |
T |
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| Q |
216 |
nnnntagtgttgtatttattaaaaatattctaaaccaagttttattcaagttttcgtcataaaagctttattaaattattttgttctt |
303 |
Q |
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||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7791491 |
aaaatagtgttgtatttgttaaaaatattttaaaccaagttttattcaagttttcgtcataaaagctttattaaattattttgttctt |
7791578 |
T |
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