View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11870_high_3 (Length: 694)
Name: NF11870_high_3
Description: NF11870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11870_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 641; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 641; E-Value: 0
Query Start/End: Original strand, 20 - 676
Target Start/End: Complemental strand, 31549891 - 31549235
Alignment:
| Q |
20 |
atcctcgctcaatgaaatgtataagcggttacaagaatacataacaagtttacaacagtacaatggaaaacttcatactgagctttcatcagttgaagat |
119 |
Q |
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| T |
31549891 |
atcctcgctcaatgaaatgtataagcggttacaagaatacataacaagtttacaacagtacaatggaaaacttcatactgagctttcatcagttgaagat |
31549792 |
T |
|
| Q |
120 |
gaactcaaacgtgtagagaaagagaaggctactgcagaggagaacatcgccatgctaaagggtcaacttactttatccattgtaagttctgctttcacat |
219 |
Q |
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| T |
31549791 |
gaactcaaacgtgtagagaaagagaaggctactgcagaggagaacatcgccatgctaaagggtcaacttactttatccattgtaagttctgctttcacat |
31549692 |
T |
|
| Q |
220 |
gtgattcttttcaactggaattcaagttagaataggctaagatttactcattctttatcttcttctgcgaatgtttagacgaagataatgttaactacgt |
319 |
Q |
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| T |
31549691 |
gtgattcttttcaactggaattcaagttagaataggctaagatttactcattctttatcttcttctgcgaatgtttagacgaagataatgttaactacgt |
31549592 |
T |
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| Q |
320 |
tgaatatgatatactttgaagatgattcaaattgtatataatattttgttcaatacaatttcttgtgacctaagttattgaactcggttcatttaatagt |
419 |
Q |
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| T |
31549591 |
tgaatatgatatactttgaagatgattcaaattgtatataatattttgttcaatacaatttcttgtgacctaagttattgaacttggttcatttaatagt |
31549492 |
T |
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| Q |
420 |
cttctcaagaagaggccacaaagcagaaagatgatcttgctagtgaagtttattctatgagaggagagttgaaacaagtaagagatgatagagaccgtca |
519 |
Q |
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| T |
31549491 |
cttctcaagaagaggccacaaagcagaaagatgatcttgctagtgaagtttattctatgagaggagagttgaaacaagtaagagatgatagagaccgtca |
31549392 |
T |
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| Q |
520 |
attatctcaagcacaaagtttagatgctgagttcatgaaactaaaagaatctagggagaactcttgcattgaattggacagcttgacattaaaagcaaat |
619 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31549391 |
attatctcaagcgcaaagtttagatgctgagttcatgaaactaaaagaatctagggagaactcttgcattgaattggacagcttgacattaaaagcaaat |
31549292 |
T |
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| Q |
620 |
gaactggaggttggtttctatacctgatatccttctattaaatatcacactatttta |
676 |
Q |
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| T |
31549291 |
gaactggaggttggtttctatacctgatatccttctattcaatattacactatttta |
31549235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 27 - 145
Target Start/End: Original strand, 34649503 - 34649621
Alignment:
| Q |
27 |
ctcaatgaaatgtataagcggttacaagaatacataacaagtttacaacagtacaatggaaaacttcatactgagctttcatcagttgaagatgaactca |
126 |
Q |
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|||||||| ||||||||||| |||||||| || |||||||| || || ||||||||||||||||||||| |||| ||||| |||| |||| ||| |||| |
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| T |
34649503 |
ctcaatgacatgtataagcgattacaagagtatataacaagcttgcagcagtacaatggaaaacttcattctgaactttctacagtggaaggtgatctca |
34649602 |
T |
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| Q |
127 |
aacgtgtagagaaagagaa |
145 |
Q |
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| T |
34649603 |
agcgtgtagagaaagagaa |
34649621 |
T |
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Back To:
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