View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11870_high_36 (Length: 262)
Name: NF11870_high_36
Description: NF11870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11870_high_36 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 43475164 - 43474918
Alignment:
| Q |
1 |
ctttcacaattcaaattaacattcatcgcatcaaaatgttagctacggtacataatgactcacttaaaaatagaaaagtaagataataaatacatatata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| ||||||||||| |
|
|
| T |
43475164 |
ctttcacaattcaaattaacattcatcgcatcaaaatgttagctaccgtacataatgactcacttgaaaatagaaaagtaagataatatatacatatata |
43475065 |
T |
|
| Q |
101 |
tacatcctgaagcgagcattacnnnnnnnncaaacacaccatcttgaagtttgaacatattgaaatcgaagcaatttacagtgttggtgtatttaagact |
200 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |
|
|
| T |
43475064 |
tacatcctgaagcgagcattacaaaaaaaacaaacacaccatcttgaagtttgaacatattgaaattgaagcaattcacagtgttggtgtatttaagact |
43474965 |
T |
|
| Q |
201 |
actaattcaaccttttcaaggtttcttggcttcctttatatctctgc |
247 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43474964 |
actaattcaaccttttcaaggtttcttggcttcctttatatctctgc |
43474918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 43565130 - 43565253
Alignment:
| Q |
1 |
ctttcacaattcaaattaacattcatcgcatcaaaatgttagctacggtacataatgactcacttaaaaatagaaaagtaag--ataataaatacatata |
98 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||| | ||||||||||||||||||| |||| ||||||||||| |||||| ||||| ||| |
|
|
| T |
43565130 |
ctttcacaattcaaattaacattcatggcatcaaaatgttagccatggtacataatgactcacttgaaaacagaaaagtaagatataatatatacaaata |
43565229 |
T |
|
| Q |
99 |
tatacatcctgaagcgagcattac |
122 |
Q |
| |
|
||||||||||||||| |||||||| |
|
|
| T |
43565230 |
tatacatcctgaagccagcattac |
43565253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 172 - 247
Target Start/End: Original strand, 43565281 - 43565357
Alignment:
| Q |
172 |
caatttacagtgttggtgtatttaagactactaattcaacc-ttttcaaggtttcttggcttcctttatatctctgc |
247 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||| |
|
|
| T |
43565281 |
caattcacagtgttggtgtatttaagactactaattcaacctttttctatcactcttggcttcctttatatctctgc |
43565357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 202 - 248
Target Start/End: Original strand, 43572271 - 43572317
Alignment:
| Q |
202 |
ctaattcaaccttttcaaggtttcttggcttcctttatatctctgct |
248 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| |||| ||||| |
|
|
| T |
43572271 |
ctaattcaacctcttcaaggtttcttggcttcctttgtatccctgct |
43572317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University