View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11870_high_4 (Length: 632)
Name: NF11870_high_4
Description: NF11870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11870_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 503; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 11 - 568
Target Start/End: Original strand, 411508 - 412082
Alignment:
| Q |
11 |
cagagactggtcagataagcattgatggaaaagtgaagtacggtacaccacaccttacatgtgtgggatcttttgctgtggatgtgagcttagaagggaa |
110 |
Q |
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| T |
411508 |
cagagactggtcagataagcattgatggaaaagtgaagtacggtacaccacaccttacatgtgtgggatcttttgctgtggatgtgagcttagaagggaa |
411607 |
T |
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| Q |
111 |
tctgattttgtgcagacagattgatcaacctgggatgattggtactgtcggaaacatattaggcgagaaaaatgtgaatgtgagctttatgagcgttgga |
210 |
Q |
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| T |
411608 |
tctgattttgtgcagacagattgatcaacctgggatgattggtactgtcggaaacatattaggcgagaaaaatgtgaatgtgagctttatgagtgttgga |
411707 |
T |
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| Q |
211 |
agaacatcgcgtaggaagaaagcgcttatggctattggcgtcgatgaagagccaaataaggaagctcttgagaatattggagctgtgcctgctatcgagg |
310 |
Q |
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| T |
411708 |
agaacatcgcgtaggaagaaagcgcttatggctattggcgtcgatgaagagccaaataaggaagctcttgagaatattggagctgtgcctgctattgagg |
411807 |
T |
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| Q |
311 |
agtttgtgtttctcaagctttaaatagatgattcataaatatatgaatttcatcttatgatt-----------------catatatatataggtattgat |
393 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |
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| T |
411808 |
agtttgtgtttctcaagctttaaatagatgattcataaatatatgaatttcatcttgtgattgttagaaagtaatactatatatatatataggtattgat |
411907 |
T |
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| Q |
394 |
tggagaaatgaagttaatgagtctctgattttagtagaaagcttgagaaatttgttatgaagtaatggatgatagagtataaataaaactagctgaaaac |
493 |
Q |
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| T |
411908 |
tggagaaatgaagttaatgagtctctgattttagtagaaagcttgagaaatttgttatgaagtaatggatgatagagtataaataaaactagctgaaaac |
412007 |
T |
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| Q |
494 |
aaaagcagctagtagtgtgtgacctgtactaagttttgtatcatggtttttctagctttaaatatgtacaaacta |
568 |
Q |
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| T |
412008 |
aaaagcagctagtagtgtgtgacctgtactaagttttgtatcatggtttttctagctttaaatatgtacaaacta |
412082 |
T |
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