View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11870_high_40 (Length: 247)
Name: NF11870_high_40
Description: NF11870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11870_high_40 |
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Alignment Details
Target: chr2 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 43600474 - 43600226
Alignment:
| Q |
1 |
ctgatgtattttgtgaatttgaaacctatgtttaactcactatattttttgtacattttgagaattagaggcttatgttgccaacttactgtctatgtgg |
100 |
Q |
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| T |
43600474 |
ctgatgtattttgtgaatttgagacctatgtttaactcgctatattttttgtgcattttgagaattagaggcttatgttgccaacttattatctatgtgg |
43600375 |
T |
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| Q |
101 |
tgcattttg----------agatagagaggcatgtgatgccaaattactatctttttggtgcattttgagaactataggcctatgttgccaagtaacttt |
190 |
Q |
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| T |
43600374 |
tgcattttggtttattttgagatagagaggcctgtgatgccaaattactatctttttggtgcattttgagaattataggcctatgttgccaagtaacttt |
43600275 |
T |
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| Q |
191 |
tgctcgactttgaaagtacaattagatgttatacaattataggcctatg |
239 |
Q |
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| T |
43600274 |
tgctcgactttgaaagtacaattacatgttatacaattataggcctatg |
43600226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 2 - 182
Target Start/End: Complemental strand, 18129495 - 18129305
Alignment:
| Q |
2 |
tgatgtattttgtgaatttgaaacctatgtttaactcactatattttttgtacattttgagaattagaggcttatgttgccaacttactgtctatgtggt |
101 |
Q |
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| T |
18129495 |
tgatgtattttgtgaatttgagacctatgtttaactcactatattttttgtgcattttgagaattagaggcttatgttgccaacttactatctatgtggt |
18129396 |
T |
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| Q |
102 |
gcat----------tttgagatagagaggcatgtgatgccaaattactatctttttggtgcattttgagaactataggcctatgttgccaa |
182 |
Q |
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| T |
18129395 |
gcattttggtttattttgagatagagaggcctgtgatgccaaattactatctttttggtgcattttgagaattataggcctatattgccaa |
18129305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 15623201 - 15623449
Alignment:
| Q |
1 |
ctgatgtattttgtgaatttgaaacctatgtttaactcactatattttttgtacattttgagaattagaggcttatgttgccaacttactgtctatgtgg |
100 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| | |
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| T |
15623201 |
ctgatgtattttgtgaatttgagacctatgtttaactcactatattttttgtgcattttgagaattagaggcttatgttgccaacttactatctatgttg |
15623300 |
T |
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| Q |
101 |
tgcattttg----------agatagagaggcatgtgatgccaaattactatctttttggtgcattttgagaactataggcctatgttgccaagtaacttt |
190 |
Q |
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| T |
15623301 |
tgcattttggtttattttgatatagagaggcctctgatgccaaattactatctttttggtgcattttgagaattataggcctatgttgccaattaacttt |
15623400 |
T |
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| Q |
191 |
tgctcgactttgaaagtacaattagatgttatacaattataggcctatg |
239 |
Q |
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| T |
15623401 |
tgctcgactttgaaagtacaattacatgttatacaattataggcctatg |
15623449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 2 - 174
Target Start/End: Complemental strand, 11316226 - 11316044
Alignment:
| Q |
2 |
tgatgtattttgtgaatttgaaacctatgtttaactcactatattttttgtacattttgagaattagaggcttatgttgccaacttactgtctatgtggt |
101 |
Q |
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| T |
11316226 |
tgatgtattttgtgaatttgagacctatgtttaactcactatattttttgtgcattttgagaattagaggcttatgttgccaacttactatctatgtggt |
11316127 |
T |
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| Q |
102 |
gcat----------tttgagatagagaggcatgtgatgccaaattactatctttttggtgcattttgagaactataggcctat |
174 |
Q |
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| T |
11316126 |
gcattttggtttattttgagatagagaggcatgtgatgccaaattactatctttttggtgcattttgagaattataggcctat |
11316044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 128 - 219
Target Start/End: Complemental strand, 2399963 - 2399872
Alignment:
| Q |
128 |
tgccaaattactatctttttggtgcattttgagaactataggcctatgttgccaagtaacttttgctcgactttgaaagtacaattagatgt |
219 |
Q |
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| T |
2399963 |
tgccaacttactatctttttggtgcattttgagaattagaggtctatgttgtcaagttacttttgctatactttgaatatataattagatgt |
2399872 |
T |
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