View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11870_high_42 (Length: 244)

Name: NF11870_high_42
Description: NF11870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11870_high_42
NF11870_high_42
[»] chr4 (6 HSPs)
chr4 (20-228)||(44540182-44540391)
chr4 (20-104)||(19399835-19399920)
chr4 (20-104)||(37861163-37861248)
chr4 (20-104)||(46963924-46964009)
chr4 (20-57)||(46362802-46362839)
chr4 (26-58)||(39813783-39813815)
[»] chr5 (4 HSPs)
chr5 (20-108)||(6825445-6825534)
chr5 (23-105)||(5736058-5736141)
chr5 (20-104)||(523628-523713)
chr5 (23-79)||(15472838-15472895)
[»] chr1 (3 HSPs)
chr1 (20-104)||(18919258-18919343)
chr1 (20-104)||(34462722-34462807)
chr1 (20-107)||(1640247-1640335)
[»] chr7 (3 HSPs)
chr7 (20-76)||(39511188-39511245)
chr7 (20-79)||(47375858-47375918)
chr7 (20-58)||(16831660-16831698)
[»] chr6 (4 HSPs)
chr6 (20-77)||(31954809-31954867)
chr6 (20-99)||(3768054-3768134)
chr6 (20-79)||(357171-357231)
chr6 (21-104)||(2588766-2588850)
[»] chr2 (2 HSPs)
chr2 (20-58)||(35977336-35977374)
chr2 (20-79)||(20556771-20556831)
[»] chr3 (1 HSPs)
chr3 (20-79)||(39956207-39956266)


Alignment Details
Target: chr4 (Bit Score: 162; Significance: 1e-86; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 20 - 228
Target Start/End: Original strand, 44540182 - 44540391
Alignment:
Q  20 ttcaagacattgaatgcacaatttctaaaaataagtttt-acgtttggcttctaaacttgttcctgaaggggacaagttaatattttccaataannnnnn 118  Q
    |||||||||| ||||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||          
T  44540182 ttcaagacatcgaatgcacaatttctaaaaataaatttttacgtttggcttctaaacttgttccttaaggggaaaagttaatattttccaataatttttt 44540281  T
Q  119 nnaaagagtgaccacgagactaatttgttacctaagaatcagacaaggataatctcatctcttatgcggtgatgcaacggttgagacgattcaattactt 218  Q
      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44540282 ttaaagagtgaccacgagactaatttgttacctaagaatcagacaaggataatctcatctcttatgcggtgatgcaacggttgagacgattcaattactt 44540381  T
Q  219 tattttactt 228  Q
    ||||||||||    
T  44540382 tattttactt 44540391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 104
Target Start/End: Complemental strand, 19399920 - 19399835
Alignment:
Q  20 ttcaagacattgaatgcacaatttctaaaaataagttt-tacgtttggcttctaaacttgttcctgaaggggacaagttaatattt 104  Q
    ||||||||||||||||||||||||| |||||||||||| ||  ||||||| ||||||||||  || ||||| ||||||||||||||    
T  19399920 ttcaagacattgaatgcacaatttccaaaaataagtttctatatttggctactaaacttgtgtcttaagggcacaagttaatattt 19399835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 104
Target Start/End: Complemental strand, 37861248 - 37861163
Alignment:
Q  20 ttcaagacattgaatgcacaatttctaaaaataagttt-tacgtttggcttctaaacttgttcctgaaggggacaagttaatattt 104  Q
    ||||||||||||||||||||||||| |||| ||||||| ||| ||||| |||||||||||| ||| ||||| ||||||||| ||||    
T  37861248 ttcaagacattgaatgcacaatttccaaaattaagtttctacatttggtttctaaacttgtgccttaagggcacaagttaacattt 37861163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 104
Target Start/End: Original strand, 46963924 - 46964009
Alignment:
Q  20 ttcaagacattgaatgcacaatttctaaaaataagttt-tacgtttggcttctaaacttgttcctgaaggggacaagttaatattt 104  Q
    ||||||||||||||||||| ||||| |||| ||||||| ||| ||||| |||||||||||| ||| ||||| ||||||||| ||||    
T  46963924 ttcaagacattgaatgcacgatttccaaaattaagtttctacatttggtttctaaacttgtgccttaagggcacaagttaacattt 46964009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 46362802 - 46362839
Alignment:
Q  20 ttcaagacattgaatgcacaatttctaaaaataagttt 57  Q
    ||||||||||||||||||||||||| |||| |||||||    
T  46362802 ttcaagacattgaatgcacaatttccaaaattaagttt 46362839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 58
Target Start/End: Original strand, 39813783 - 39813815
Alignment:
Q  26 acattgaatgcacaatttctaaaaataagtttt 58  Q
    |||||||||||||||||||||||| ||||||||    
T  39813783 acattgaatgcacaatttctaaaattaagtttt 39813815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 108
Target Start/End: Original strand, 6825445 - 6825534
Alignment:
Q  20 ttcaagacattgaatgcacaatttctaaaaataag-ttttacgtttggcttctaaacttgttcctgaaggggacaagttaatattttcca 108  Q
    ||||||||||||||||||||||||  ||||||||| ||||||||||||||| ||||||||| ||| ||||| |||| |||| ||||||||    
T  6825445 ttcaagacattgaatgcacaattttcaaaaataagtttttacgtttggcttttaaacttgtgccttaagggcacaaattaacattttcca 6825534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 23 - 105
Target Start/End: Original strand, 5736058 - 5736141
Alignment:
Q  23 aagacattgaatgcacaatttctaaaaataagttt-tacgtttggcttctaaacttgttcctgaaggggacaagttaatatttt 105  Q
    |||||||||||||||||||||| |||||||||||| ||| ||||||| ||||||||||  || ||||| ||||||||| |||||    
T  5736058 aagacattgaatgcacaatttccaaaaataagtttctacatttggctactaaacttgtatcttaagggcacaagttaacatttt 5736141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 104
Target Start/End: Complemental strand, 523713 - 523628
Alignment:
Q  20 ttcaagacattgaatgcacaatttctaaaaataagtttt-acgtttggcttctaaacttgttcctgaaggggacaagttaatattt 104  Q
    ||||||||||| ||||||||||||  |||||||| |||| |  |||||||||||||||||| ||| ||||| ||||||||| ||||    
T  523713 ttcaagacattaaatgcacaattttcaaaaataaatttttatatttggcttctaaacttgtgccttaagggcacaagttaacattt 523628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 79
Target Start/End: Complemental strand, 15472895 - 15472838
Alignment:
Q  23 aagacattgaatgcacaatttctaaaaataagttt-tacgtttggcttctaaacttgt 79  Q
    |||| ||||||||||||||||| |||||||||||| ||| |||  |||||||||||||    
T  15472895 aagatattgaatgcacaatttccaaaaataagtttctacatttaacttctaaacttgt 15472838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 104
Target Start/End: Complemental strand, 18919343 - 18919258
Alignment:
Q  20 ttcaagacattgaatgcacaatttctaaaaataagttt-tacgtttggcttctaaacttgttcctgaaggggacaagttaatattt 104  Q
    ||||||||||||||||||||||||  |||||||||||| ||| |||||||| ||||||||| ||| ||||| ||||||||| ||||    
T  18919343 ttcaagacattgaatgcacaattttcaaaaataagtttctacatttggcttataaacttgtgccttaagggcacaagttaacattt 18919258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 104
Target Start/End: Complemental strand, 34462807 - 34462722
Alignment:
Q  20 ttcaagacattgaatgcacaatttctaaaaataagttt-tacgtttggcttctaaacttgttcctgaaggggacaagttaatattt 104  Q
    ||||||||||||||||||||||||  |||||||| ||| ||| |||| |||||||||||||  || ||||| ||||||||| ||||    
T  34462807 ttcaagacattgaatgcacaattttcaaaaataaatttctacatttgacttctaaacttgtgtcttaagggcacaagttaacattt 34462722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 107
Target Start/End: Original strand, 1640247 - 1640335
Alignment:
Q  20 ttcaagacattgaatgcacaatttctaaaaataagttt-tacgtttggcttctaaacttgttcctgaaggggacaagttaatattttcc 107  Q
    |||||||||||||||||||||||| ||||| ||||||| ||| |||  ||||||||||||| |||  |||| ||||||||  |||||||    
T  1640247 ttcaagacattgaatgcacaatttttaaaattaagtttctacatttaacttctaaacttgtgcctttagggtacaagttaccattttcc 1640335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 39511245 - 39511188
Alignment:
Q  20 ttcaagacattgaatgcacaatttctaaaaataag-ttttacgtttggcttctaaact 76  Q
    ||||||||||||||||||||||||||||||||||| |||||| | |||||||||||||    
T  39511245 ttcaagacattgaatgcacaatttctaaaaataagtttttacatctggcttctaaact 39511188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 79
Target Start/End: Original strand, 47375858 - 47375918
Alignment:
Q  20 ttcaagacattgaatgcacaatttctaaaaataagttt-tacgtttggcttctaaacttgt 79  Q
    ||||||||||||||||||||||||| |||||||||||| ||| ||||| ||||||||||||    
T  47375858 ttcaagacattgaatgcacaatttccaaaaataagtttctacatttggattctaaacttgt 47375918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 58
Target Start/End: Original strand, 16831660 - 16831698
Alignment:
Q  20 ttcaagacattgaatgcacaatttctaaaaataagtttt 58  Q
    ||||||| |||||||||||||||||||||||||| ||||    
T  16831660 ttcaagatattgaatgcacaatttctaaaaataaatttt 16831698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 31954867 - 31954809
Alignment:
Q  20 ttcaagacattgaatgcacaatttctaaaaataag-ttttacgtttggcttctaaactt 77  Q
    |||||||||||| ||||| ||||||||||| |||| |||||| ||||||||||||||||    
T  31954867 ttcaagacattgtatgcataatttctaaaattaagtttttacatttggcttctaaactt 31954809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 99
Target Start/End: Complemental strand, 3768134 - 3768054
Alignment:
Q  20 ttcaagacattgaatgcacaatttctaaaaataag-ttttacgtttggcttctaaacttgttcctgaaggggacaagttaa 99  Q
    ||||||| ||||||| ||||||||| ||||||||| ||||||  ||| || |||||||||| ||| ||||| |||||||||    
T  3768134 ttcaagatattgaatacacaatttccaaaaataagtttttacacttgactactaaacttgtgccttaagggcacaagttaa 3768054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 79
Target Start/End: Complemental strand, 357231 - 357171
Alignment:
Q  20 ttcaagacattgaatgcacaatttctaaaaataagttt-tacgtttggcttctaaacttgt 79  Q
    ||||| ||||||||||||||||||  |||||||| ||| ||| ||||||||||||| ||||    
T  357231 ttcaaaacattgaatgcacaattttcaaaaataaatttctacatttggcttctaaatttgt 357171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 104
Target Start/End: Complemental strand, 2588850 - 2588766
Alignment:
Q  21 tcaagacattgaatgcacaatttctaaaaataagttt-tacgtttggcttctaaacttgttcctgaaggggacaagttaatattt 104  Q
    |||||| ||||||||||||||||  |||| ||||||| ||| ||||| || |||||||||  || ||||| ||||||||| ||||    
T  2588850 tcaagatattgaatgcacaattttcaaaattaagtttctacatttggtttataaacttgtgtcttaagggcacaagttaacattt 2588766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 58
Target Start/End: Complemental strand, 35977374 - 35977336
Alignment:
Q  20 ttcaagacattgaatgcacaatttctaaaaataagtttt 58  Q
    |||||||||||||||||| ||||||||||| ||||||||    
T  35977374 ttcaagacattgaatgcataatttctaaaattaagtttt 35977336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 79
Target Start/End: Complemental strand, 20556831 - 20556771
Alignment:
Q  20 ttcaagacattgaatgcacaatttctaaaaataagttt-tacgtttggcttctaaacttgt 79  Q
    ||||||||||||||||||| ||||| |||| ||||||| ||| ||| | ||||||||||||    
T  20556831 ttcaagacattgaatgcacgatttccaaaattaagtttctacatttagtttctaaacttgt 20556771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 79
Target Start/End: Original strand, 39956207 - 39956266
Alignment:
Q  20 ttcaagacattgaatgcacaatttctaaaaataagttt-tacgtttggcttctaaacttgt 79  Q
    |||| |||||||||||||||||||  |||||||| ||| ||| ||||||||||||||||||    
T  39956207 ttcatgacattgaatgcacaattttcaaaaataaatttctac-tttggcttctaaacttgt 39956266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University