View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11870_high_44 (Length: 241)
Name: NF11870_high_44
Description: NF11870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11870_high_44 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 19 - 241
Target Start/End: Original strand, 7840145 - 7840367
Alignment:
| Q |
19 |
ggatacaccttcgatcagaagtgttggtgctatagaactgaatgtatgaggcattgtcattatcgaaattgcaaacacaccctctagtgtctctctagtt |
118 |
Q |
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| T |
7840145 |
ggatacaccttcgatcagaagtgttggtgctatagaactgaatgtatgaggcattgtcattatcgaaattgcaaacacaccctctagtgtctctctagtt |
7840244 |
T |
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| Q |
119 |
ggtcattttagtcctcaaatttgtttttcttttgtaaatttagtccataaaactacaaacaaaagagacagttggggatgaatttttaattttaatacat |
218 |
Q |
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| T |
7840245 |
ggtcattttggtcctcaaatttgtttttcttttgtaaatttagtccataaaactacaaacaaaagagacagttggggatgaatttgtaattttaatacat |
7840344 |
T |
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| Q |
219 |
tcagggactatgacgacagtgcc |
241 |
Q |
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| T |
7840345 |
tcagggactatgacgacagtgcc |
7840367 |
T |
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Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 119 - 218
Target Start/End: Complemental strand, 52922548 - 52922449
Alignment:
| Q |
119 |
ggtcattttagtcctcaaatttgtttttcttttgtaaatttagtccataaaactacaaacaaaagagacagttggggatgaatttttaattttaatacat |
218 |
Q |
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| T |
52922548 |
ggtcattttggtcctcaagtatgttttttgttagtcaatttagtccctaaaactacaaacaaaagagacactaggggatacatttgcaatttgaatacat |
52922449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 239
Target Start/End: Original strand, 32854596 - 32854720
Alignment:
| Q |
115 |
agttggtcattttagtcctcaaatttgtttttcttttgtaaatttagtccataaaactacaaacaaaagagacagttggggatgaatttttaattttaat |
214 |
Q |
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| T |
32854596 |
agttagtcattttggtcctcaaatgtgttttttgctagtcaatttagttcatagaattacaaacaaaagagccaattaaggatacatttgcaactttgat |
32854695 |
T |
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| Q |
215 |
acattcagggactatgacgacagtg |
239 |
Q |
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| T |
32854696 |
acattcaaggactataatgacagtg |
32854720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 120 - 226
Target Start/End: Complemental strand, 35235529 - 35235423
Alignment:
| Q |
120 |
gtcattttagtcctcaaatttgtttttcttttgtaaatttagtccataaaactacaaacaaaagagacagttggggatgaatttttaattttaatacatt |
219 |
Q |
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| T |
35235529 |
gtcattttggtcctcaagtatgttttttgttagttaatttagtccctaaaactacaaacaaaagaaacactaggggatacatttgcaatttgaatacata |
35235430 |
T |
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| Q |
220 |
cagggac |
226 |
Q |
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| T |
35235429 |
cagggac |
35235423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 79 - 176
Target Start/End: Original strand, 53525639 - 53525736
Alignment:
| Q |
79 |
tatcgaaattgcaaacacaccctctagtgtctctctagttggtcattttagtcctcaaatttgtttttcttttgtaaatttagtccataaaactacaa |
176 |
Q |
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| T |
53525639 |
tatcgaaattgcaaacacaacctcaggtttctttttagttggtcggtttggtcctcaaatgtgtttttcgttattcaatttagtccataaaattacaa |
53525736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 132 - 230
Target Start/End: Original strand, 31958938 - 31959036
Alignment:
| Q |
132 |
ctcaaatttgtttttcttttgtaaatttagtccataaaactacaaacaaaagagacagttggggatgaatttttaattttaatacattcagggactatg |
230 |
Q |
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| T |
31958938 |
ctcaaatttgtttttctttggtcaatttagtccataaatatactaacaaatgagacacttggagacgtatttgtaatatagatacatttaggaactatg |
31959036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 120 - 185
Target Start/End: Original strand, 4124788 - 4124853
Alignment:
| Q |
120 |
gtcattttagtcctcaaatttgtttttcttttgtaaatttagtccataaaactacaaacaaaagag |
185 |
Q |
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| T |
4124788 |
gtcattttagtcctcaaatgtgttttttgttggtcaatttagtccatgaaattactaacaaaagag |
4124853 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 182
Target Start/End: Complemental strand, 6731269 - 6731207
Alignment:
| Q |
120 |
gtcattttagtcctcaaatttgtttttcttttgtaaatttagtccataaaactacaaacaaaa |
182 |
Q |
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| T |
6731269 |
gtcattttagtcctcaaatgtatctttcattagtcaatttagtccataaaattacacacaaaa |
6731207 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 168
Target Start/End: Original strand, 25021107 - 25021171
Alignment:
| Q |
104 |
agtgtctctctagttggtcattttagtcctcaaatttgtttttcttttgtaaatttagtccataa |
168 |
Q |
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| T |
25021107 |
agtgtctccctagttagtcgtttttgtcttcaaatgtgtttttcgttggtcaatttagtccataa |
25021171 |
T |
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