View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11870_high_47 (Length: 239)

Name: NF11870_high_47
Description: NF11870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11870_high_47
NF11870_high_47
[»] chr1 (2 HSPs)
chr1 (1-224)||(43475217-43475440)
chr1 (5-222)||(43564862-43565073)


Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 43475217 - 43475440
Alignment:
Q  1 tgccattttgattgaatgatcttgtaaaaattcttctttgtaaagaggtatgatgcatggttttataaaacaaagtactcataaattgacatttttgggg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43475217 tgccattttgattgaatgatcttgtaaaaattcttctttgtaaagaggtatgatgcatggttttataaaacaaagtactcataaattgacatttttgggg 43475316  T
Q  101 gaagccatagcatttattttgtctaagcccctcaaacagaactaatgtagtgctatgttcatatagcacgtatatgaggttttgggaaatgttttgttgt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43475317 gaagccatagcatttattttgtctaagcccctcaaacagaactaatgtagtgctatgttcatatagcacgtatatgaggttttgggaaatgttttgttgt 43475416  T
Q  201 ccatgttacaattgcctgatatat 224  Q
    ||||||||||||||||||||||||    
T  43475417 ccatgttacaattgcctgatatat 43475440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 5 - 222
Target Start/End: Complemental strand, 43565073 - 43564862
Alignment:
Q  5 attttgattgaatgatcttgtaaaaattcttctttgtaaagaggtatgatgcatggttttataaaacaaagtactcataaattgacatttttgggggaag 104  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| || |||||  ||||||||||||||||||| |||    
T  43565073 attttgattgaatgatcttgtaaaagttcttctttgtaaagaggtatgatgcattgttttataaaataa-gtactagtaaattgacatttttgggg-aag 43564976  T
Q  105 ccatagcatttattttgtctaagcccctcaaacagaactaatgtagtgctatgttcatatagcacgtatatgaggttttgggaaatgttttgttgtccat 204  Q
    ||||  |  ||    |||||||| |  ||||||||| |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  43564975 ccatctctgtt----tgtctaaggcagtcaaacagatctaatgcagtgctatgttcatatagcacgtatatgaggttttaggaaatgttttgttgtccat 43564880  T
Q  205 gttacaattgcctgatat 222  Q
     ||| |||||||||||||    
T  43564879 attataattgcctgatat 43564862  T

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