View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11870_high_48 (Length: 239)

Name: NF11870_high_48
Description: NF11870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11870_high_48
NF11870_high_48
[»] chr3 (18 HSPs)
chr3 (1-226)||(46490688-46490913)
chr3 (1-213)||(46497940-46498152)
chr3 (1-213)||(46473921-46474133)
chr3 (1-213)||(46484040-46484252)
chr3 (1-213)||(46479782-46479994)
chr3 (50-213)||(47414163-47414326)
chr3 (73-223)||(45883728-45883878)
chr3 (50-204)||(45902955-45903109)
chr3 (108-200)||(51943895-51943987)
chr3 (63-194)||(5160285-5160416)
chr3 (49-215)||(46236766-46236932)
chr3 (81-194)||(5156256-5156369)
chr3 (49-204)||(46526394-46526549)
chr3 (48-218)||(47397276-47397446)
chr3 (73-206)||(16025480-16025613)
chr3 (109-200)||(46549016-46549107)
chr3 (109-179)||(46531945-46532015)
chr3 (74-142)||(46554178-46554246)
[»] chr4 (2 HSPs)
chr4 (49-218)||(35155405-35155574)
chr4 (76-213)||(35162431-35162567)
[»] chr8 (2 HSPs)
chr8 (110-213)||(9692748-9692851)
chr8 (113-213)||(9675729-9675829)
[»] chr2 (3 HSPs)
chr2 (78-192)||(20359140-20359254)
chr2 (87-192)||(20169039-20169144)
chr2 (78-192)||(20144630-20144744)
[»] chr7 (3 HSPs)
chr7 (91-205)||(17735927-17736041)
chr7 (124-200)||(16722155-16722231)
chr7 (124-200)||(17699169-17699245)


Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 46490913 - 46490688
Alignment:
Q  1 atattgaaccttgggatcctaaagtcacctacctccactctatcatatggaagcttgtgttttagtgactccgattcagaagccaacttctcaagcaaag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46490913 atattgaaccttgggatcctaaagtcacctacctccactctatcatatggaagcttgtgttttagtgactccgattcagaagccaacttctcaagcaaag 46490814  T
Q  101 ttggcagcccatcttttgcatttggaagaaaaaagtacatagtaaattgacgcttatcttcgccttgcttataaggaaggccaagaactttaaaatcatc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46490813 ttggcagcccatcttttgcatttggaagaaaaaagtacatagtaaattcacgcttatcttcgccttgcttataaggaaggccaagaactttaaaatcatc 46490714  T
Q  201 gaaagctctaatatattgttcttcct 226  Q
    ||||||||||||||||||||||||||    
T  46490713 gaaagctctaatatattgttcttcct 46490688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 46498152 - 46497940
Alignment:
Q  1 atattgaaccttgggatcctaaagtcacctacctccactctatcatatggaagcttgtgttttagtgactccgattcagaagccaacttctcaagcaaag 100  Q
    |||||||||||||| ||||||||||||||||| |||||| | |||   |||||||||||||  ||| |||| ||||| ||||| | ||||||||||||||    
T  46498152 atattgaaccttggaatcctaaagtcacctacttccactttgtcaagaggaagcttgtgttgcagtaactcagattcggaagcaagcttctcaagcaaag 46498053  T
Q  101 ttggcagcccatcttttgcatttggaagaaaaaagtacatagtaaattgacgcttatcttcgccttgcttataaggaaggccaagaactttaaaatcatc 200  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  46498052 ttggcagcccatcttttgcatttggaagaaaaaagtacatcgtaaattgacgcttgtcttcgccttgcttataaggaaggccaagaactttaaaatcatc 46497953  T
Q  201 gaaagctctaata 213  Q
    |||| ||||||||    
T  46497952 gaaatctctaata 46497940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 46474133 - 46473921
Alignment:
Q  1 atattgaaccttgggatcctaaagtcacctacctccactctatcatatggaagcttgtgttttagtgactccgattcagaagccaacttctcaagcaaag 100  Q
    ||||||||| |||| ||||||||||||||||| |||||| ||||| | ||||||||||||| |||| | || ||||||||||||| ||| |||| ||||     
T  46474133 atattgaactttggaatcctaaagtcacctacttccactttatcaaaaggaagcttgtgttgtagtaaatcagattcagaagccaccttttcaaccaaac 46474034  T
Q  101 ttggcagcccatcttttgcatttggaagaaaaaagtacatagtaaattgacgcttatcttcgccttgcttataaggaaggccaagaactttaaaatcatc 200  Q
    |||| |||||||||||||||||||||||||||||||||||||| ||  ||||||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  46474033 ttggaagcccatcttttgcatttggaagaaaaaagtacatagtgaaacgacgcttatcttcgccttgcttataaggaagaccaagaactttaaaaccatc 46473934  T
Q  201 gaaagctctaata 213  Q
     ||||||||||||    
T  46473933 aaaagctctaata 46473921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 46484252 - 46484040
Alignment:
Q  1 atattgaaccttgggatcctaaagtcacctacctccactctatcatatggaagcttgtgttttagtgactccgattcagaagccaacttctcaagcaaag 100  Q
    ||||||||| |||| ||||||||||||||||| |||||| ||||| | ||||||||||||| |||| | ||  |||||||||||| ||| |||| ||||     
T  46484252 atattgaactttggaatcctaaagtcacctacttccactttatcaaaaggaagcttgtgttgtagtaaatcaaattcagaagccaccttttcaaccaaac 46484153  T
Q  101 ttggcagcccatcttttgcatttggaagaaaaaagtacatagtaaattgacgcttatcttcgccttgcttataaggaaggccaagaactttaaaatcatc 200  Q
    |||| |||||||||||||||||||||||||||||||||||||| ||  ||||||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  46484152 ttggaagcccatcttttgcatttggaagaaaaaagtacatagtgaaacgacgcttatcttcgccttgcttataaggaagaccaagaactttaaaaccatc 46484053  T
Q  201 gaaagctctaata 213  Q
     ||||||||||||    
T  46484052 aaaagctctaata 46484040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 46479994 - 46479782
Alignment:
Q  1 atattgaaccttgggatcctaaagtcacctacctccactctatcatatggaagcttgtgttttagtgactccgattcagaagccaacttctcaagcaaag 100  Q
    ||||||||| |||| ||||||||||||||||| |||||| || || |||||||||||||||  |||  ||| ||||||||||||| ||| || | |||||    
T  46479994 atattgaactttggaatcctaaagtcacctacttccactttaccaaatggaagcttgtgttgcagtagctcagattcagaagccaccttttcgaccaaag 46479895  T
Q  101 ttggcagcccatcttttgcatttggaagaaaaaagtacatagtaaattgacgcttatcttcgccttgcttataaggaaggccaagaactttaaaatcatc 200  Q
     || || ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| || |||||||||||| ||||    
T  46479894 ctgccaacccatcttttgcatttggaagaaaaaagtacatggtgaattgacgcttatcttcgccttgcttataaggaagaccgagaactttaaaaccatc 46479795  T
Q  201 gaaagctctaata 213  Q
     ||||||||||||    
T  46479794 aaaagctctaata 46479782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 50 - 213
Target Start/End: Original strand, 47414163 - 47414326
Alignment:
Q  50 gaagcttgtgttttagtgactccgattcagaagccaacttctcaagcaaagttggcagcccatcttttgcatttggaagaaaaaagtacatagtaaattg 149  Q
    |||||||||| | |||| |||| ||||||||||||| |||||||| ||||| || ||| |||||| |||  ||||||||||||| ||||||||  ||||     
T  47414163 gaagcttgtggtgtagtaactcagattcagaagccaccttctcaaccaaagctgacagtccatctcttgtgtttggaagaaaaatgtacatagagaattt 47414262  T
Q  150 acgcttatcttcgccttgcttataaggaaggccaagaactttaaaatcatcgaaagctctaata 213  Q
     ||| ||||||| ||||  ||||||||||||| |||||||||||||||||| ||||||| ||||    
T  47414263 ccgcgtatcttctcctttattataaggaaggcaaagaactttaaaatcatcaaaagctccaata 47414326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 73 - 223
Target Start/End: Original strand, 45883728 - 45883878
Alignment:
Q  73 gattcagaagccaacttctcaagcaaagttggcagcccatcttttgcatttggaagaaaaaagtacatagtaaattgacgcttatcttcgccttgcttat 172  Q
    ||||||||||||| |||||| | ||||| || ||| ||||||||||||||||||||||||||||||||||  ||| ||||||||||| | ||||||| ||    
T  45883728 gattcagaagccaccttctcgaccaaagctgacagtccatcttttgcatttggaagaaaaaagtacatagagaatcgacgcttatctccaccttgctcat 45883827  T
Q  173 aaggaaggccaagaactttaaaatcatcgaaagctctaatatattgttctt 223  Q
    |||| |  | ||| ||||||||| |||| |||||||||||| |||| ||||    
T  45883828 aagggatacaaagcactttaaaaccatcaaaagctctaataaattgatctt 45883878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 50 - 204
Target Start/End: Complemental strand, 45903109 - 45902955
Alignment:
Q  50 gaagcttgtgttttagtgactccgattcagaagccaacttctcaagcaaagttggcagcccatcttttgcatttggaagaaaaaagtacatagtaaattg 149  Q
    |||||||||| | |||| |||| ||||||||||| | ||||||||  ||| || |||  ||||||||||| |||||||||||||  |||||||  |||||    
T  45903109 gaagcttgtggtgtagtaactcagattcagaagctaccttctcaactaaactttgcaaaccatcttttgcttttggaagaaaaatatacatagagaattg 45903010  T
Q  150 acgcttatcttcgccttgcttataaggaaggccaagaactttaaaatcatcgaaa 204  Q
    |||||||||||| ||||||| ||||||||| | ||| ||||| ||| ||||||||    
T  45903009 acgcttatcttctccttgctcataaggaagacgaagtactttgaaaccatcgaaa 45902955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 108 - 200
Target Start/End: Complemental strand, 51943987 - 51943895
Alignment:
Q  108 cccatcttttgcatttggaagaaaaaagtacatagtaaattgacgcttatcttcgccttgcttataaggaaggccaagaactttaaaatcatc 200  Q
    ||||||||||||||||||||||||||| |||||||  ||||| ||||||||||| |||| ||||||||||||   ||||||||||||||||||    
T  51943987 cccatcttttgcatttggaagaaaaaaatacatagagaattggcgcttatcttcacctttcttataaggaagatgaagaactttaaaatcatc 51943895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 63 - 194
Target Start/End: Complemental strand, 5160416 - 5160285
Alignment:
Q  63 tagtgactccgattcagaagccaacttctcaagcaaagttggcagcccatcttttgcatttggaagaaaaaagtacatagtaaattgacgcttatcttcg 162  Q
    |||| |||| ||||||||||||| ||||| || |||||| | ||  |||||||||||||||||||| |||| ||||||||  ||| |||||||||||| |    
T  5160416 tagtaactcagattcagaagccaccttcttaaccaaagtcgacaagccatcttttgcatttggaaggaaaatgtacatagagaatggacgcttatctttg 5160317  T
Q  163 ccttgcttataaggaaggccaagaactttaaa 194  Q
    |||| |||||| ||||| | ||||||||||||    
T  5160316 cctttcttatacggaagacgaagaactttaaa 5160285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 49 - 215
Target Start/End: Original strand, 46236766 - 46236932
Alignment:
Q  49 ggaagcttgtgttttagtgactccgattcagaagccaacttctcaagcaaagttggcagcccatcttttgcatttggaagaaaaaagtacatagtaaatt 148  Q
    ||||| ||||||| | || ||||  |||||||||||| |||||||| ||| |||| || |||||||||||||| |||||||||||  |||||||  ||||    
T  46236766 ggaagattgtgttctggtaactcaaattcagaagccagcttctcaaccaaggttgacaacccatcttttgcatctggaagaaaaatatacatagagaatt 46236865  T
Q  149 gacgcttatcttcgccttgcttataaggaaggccaagaactttaaaatcatcgaaagctctaatata 215  Q
    ||| || ||||| |||||| |||||||||||   |||||||||| || |||| ||| ||| ||||||    
T  46236866 gacactcatctttgccttgattataaggaagataaagaactttataaccatcaaaatctccaatata 46236932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 81 - 194
Target Start/End: Complemental strand, 5156369 - 5156256
Alignment:
Q  81 agccaacttctcaagcaaagttggcagcccatcttttgcatttggaagaaaaaagtacatagtaaattgacgcttatcttcgccttgcttataaggaagg 180  Q
    |||||||||||||| ||| | |||||| |||||||| |||||||||||||||| ||||||||  ||| |||||||||||| |||||  ||||| |||||     
T  5156369 agccaacttctcaaccaatgctggcagtccatctttagcatttggaagaaaaatgtacatagagaatcgacgcttatctttgccttttttatacggaaga 5156270  T
Q  181 ccaagaactttaaa 194  Q
    | ||||||||||||    
T  5156269 cgaagaactttaaa 5156256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 49 - 204
Target Start/End: Original strand, 46526394 - 46526549
Alignment:
Q  49 ggaagcttgtgttttagtgactccgattcagaagccaacttctcaagcaaagttggcagcccatcttttgcatttggaagaaaaaagtacatagtaaatt 148  Q
    ||||| ||||| | |||| |||| | ||||||||| | |||||| |  ||||||||||  |||||| ||||  |||||||||||| ||||||||  ||||    
T  46526394 ggaaggttgtggtgtagtaactcaggttcagaagctaccttctcgattaaagttggcaaaccatctcttgctcttggaagaaaaatgtacatagagaatt 46526493  T
Q  149 gacgcttatcttcgccttgcttataaggaaggccaagaactttaaaatcatcgaaa 204  Q
    ||||||||||||| ||||||||||||||||| |  || ||||| ||| ||||||||    
T  46526494 gacgcttatcttctccttgcttataaggaagacggagtactttgaaaccatcgaaa 46526549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 48 - 218
Target Start/End: Original strand, 47397276 - 47397446
Alignment:
Q  48 tggaagcttgtgttttagtgactccgattcagaagccaacttctcaagcaaagttggcagcccatcttttgcatttggaagaaaaaagtacatagtaaat 147  Q
    |||||| ||||||| |||| ||||  ||| ||||||||  ||||||| ||||  || ||  ||||||||||||||||||||||||| |||||| |  ||     
T  47397276 tggaagattgtgttctagtaactcaaatttagaagccatgttctcaaccaaatctgtcaatccatcttttgcatttggaagaaaaatgtacatggagaaa 47397375  T
Q  148 tgacgcttatcttcgccttgcttataaggaaggccaagaactttaaaatcatcgaaagctctaatatattg 218  Q
    || ||||||||||| |||||| |||||| ||| | ||| ||||| ||||||| |||| | |||||| ||||    
T  47397376 tggcgcttatcttcaccttgcctataagaaagacgaagtactttgaaatcatggaaaacactaataaattg 47397446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 73 - 206
Target Start/End: Complemental strand, 16025613 - 16025480
Alignment:
Q  73 gattcagaagccaacttctcaagcaaagttggcagcccatcttttgcatttggaagaaaaaagtacatagtaaattgacgcttatcttcgccttgcttat 172  Q
    |||| |||||||| | |||||| |||||  | ||| |||||| || |||||||||||||||| |||||   |||||||||||||||||| |||||  | |    
T  16025613 gattgagaagccaccctctcaatcaaagcagacagtccatctctttcatttggaagaaaaaaatacattcaaaattgacgcttatcttcaccttgtctgt 16025514  T
Q  173 aaggaaggccaagaactttaaaatcatcgaaagc 206  Q
    | ||||| | ||| ||||| ||||||||||||||    
T  16025513 atggaagacgaagtactttgaaatcatcgaaagc 16025480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 109 - 200
Target Start/End: Original strand, 46549016 - 46549107
Alignment:
Q  109 ccatcttttgcatttggaagaaaaaagtacatagtaaattgacgcttatcttcgccttgcttataaggaaggccaagaactttaaaatcatc 200  Q
    |||||||||| |||||||||||||||||||||||  ||||| || |||||||  ||||  |||||||||||   ||||||||| ||| ||||    
T  46549016 ccatcttttgtatttggaagaaaaaagtacatagagaattgtcgtttatcttttccttatttataaggaagataaagaactttgaaaccatc 46549107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 109 - 179
Target Start/End: Complemental strand, 46532015 - 46531945
Alignment:
Q  109 ccatcttttgcatttggaagaaaaaagtacatagtaaattgacgcttatcttcgccttgcttataaggaag 179  Q
    ||||||| |||||  |||||||||||||||||||  ||||||||  |||| | ||||||||||||||||||    
T  46532015 ccatcttgtgcatcgggaagaaaaaagtacatagagaattgacgaatatcgttgccttgcttataaggaag 46531945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 142
Target Start/End: Original strand, 46554178 - 46554246
Alignment:
Q  74 attcagaagccaacttctcaagcaaagttggcagcccatcttttgcatttggaagaaaaaagtacatag 142  Q
    |||| |||||||  ||||||| ||||| || || ||||||||||||||  ||||| |||||||||||||    
T  46554178 attccgaagccactttctcaatcaaagctgacaacccatcttttgcatcgggaagtaaaaagtacatag 46554246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 49 - 218
Target Start/End: Complemental strand, 35155574 - 35155405
Alignment:
Q  49 ggaagcttgtgttttagtgactccgattcagaagccaacttctcaagcaaagttggcagcccatcttttgcatttggaagaaaaaagtacatagtaaatt 148  Q
    ||||||||||| | |||  ||||  |||||||||||| |||||||| ||||| ||  || ||||||||||||||||||||||||| ||||||||  ||||    
T  35155574 ggaagcttgtgctctagcaactcaaattcagaagccaccttctcaaccaaagctgatagtccatcttttgcatttggaagaaaaatgtacatagagaatt 35155475  T
Q  149 gacgcttatcttcgccttgcttataaggaaggccaagaactttaaaatcatcgaaagctctaatatattg 218  Q
      |||| |||||  ||||||||||| ||||| | ||||||||||||| |||| |||||||||||| ||||    
T  35155474 tccgctcatcttttccttgcttatacggaagacgaagaactttaaaaccatcaaaagctctaataaattg 35155405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 76 - 213
Target Start/End: Complemental strand, 35162567 - 35162431
Alignment:
Q  76 tcagaagccaacttctcaagcaaagttggcagcccatcttttgcatttggaagaaaaaagtacatagtaaattgacgcttatcttcgccttgcttataag 175  Q
    |||||||||| |||||||| ||||| || ||| |||||||||||||||||||| |||| ||||||||  ||||  |||| |||||  |||||||||||||    
T  35162567 tcagaagccaccttctcaaccaaagctgacaggccatcttttgcatttggaag-aaaatgtacatagagaatttccgctcatcttttccttgcttataag 35162469  T
Q  176 gaaggccaagaactttaaaatcatcgaaagctctaata 213  Q
    |||| | ||||||||||||| |||| ||||||||||||    
T  35162468 gaagacgaagaactttaaaaccatcaaaagctctaata 35162431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 110 - 213
Target Start/End: Original strand, 9692748 - 9692851
Alignment:
Q  110 catcttttgcatttggaagaaaaaagtacatagtaaattgacgcttatcttcgccttgcttataaggaaggccaagaactttaaaatcatcgaaagctct 209  Q
    |||||||||||||||||||||||| ||||||||  ||||| ||||||| ||  ||||  ||||||||||| | ||||||||||||| |||| ||||||||    
T  9692748 catcttttgcatttggaagaaaaatgtacatagagaattgtcgcttattttttccttaattataaggaagacgaagaactttaaaaccatcaaaagctct 9692847  T
Q  210 aata 213  Q
    ||||    
T  9692848 aata 9692851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 113 - 213
Target Start/End: Original strand, 9675729 - 9675829
Alignment:
Q  113 cttttgcatttggaagaaaaaagtacatagtaaattgacgcttatcttcgccttgcttataaggaaggccaagaactttaaaatcatcgaaagctctaat 212  Q
    ||||||||||||||||||||| ||||||||  ||||| ||||||||| | ||||||| |||||| || | ||| ||||||||| |||| |||||||||||    
T  9675729 cttttgcatttggaagaaaaatgtacatagagaattgtcgcttatctccaccttgctcataagggagacaaagcactttaaaaccatcaaaagctctaat 9675828  T
Q  213 a 213  Q
    |    
T  9675829 a 9675829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 78 - 192
Target Start/End: Complemental strand, 20359254 - 20359140
Alignment:
Q  78 agaagccaacttctcaagcaaagttggcagcccatcttttgcatttggaagaaaaaagtacatagtaaattgacgcttatcttcgccttgcttataagga 177  Q
    ||||| || ||||||||  |||| |||||| ||||||||||| ||||| | |||||  |||||||  ||||||||| ||||||  ||||  |||||||||    
T  20359254 agaagtcatcttctcaactaaagctggcagtccatcttttgcgtttggcaaaaaaatatacatagagaattgacgcgtatcttgaccttttttataagga 20359155  T
Q  178 aggccaagaacttta 192  Q
    || | ||||||||||    
T  20359154 agacgaagaacttta 20359140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 87 - 192
Target Start/End: Original strand, 20169039 - 20169144
Alignment:
Q  87 cttctcaagcaaagttggcagcccatcttttgcatttggaagaaaaaagtacatagtaaattgacgcttatcttcgccttgcttataaggaaggccaaga 186  Q
    ||||||||  |||| |||||| ||||||||||| ||||| | |||||  |||||||  ||||||||| ||||||  ||||  ||||||||||| | ||||    
T  20169039 cttctcaactaaagctggcagtccatcttttgcgtttggcaaaaaaatatacatagagaattgacgcgtatcttgaccttttttataaggaagacgaaga 20169138  T
Q  187 acttta 192  Q
    ||||||    
T  20169139 acttta 20169144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 192
Target Start/End: Complemental strand, 20144744 - 20144630
Alignment:
Q  78 agaagccaacttctcaagcaaagttggcagcccatcttttgcatttggaagaaaaaagtacatagtaaattgacgcttatcttcgccttgcttataagga 177  Q
    ||||| || ||||||||  |||| |||||| ||||||||||| || || | |||||  |||||||  ||||||||| ||||||  ||||  |||||||||    
T  20144744 agaagtcatcttctcaactaaagctggcagtccatcttttgcgttaggcaaaaaaatatacatagagaattgacgcgtatcttgaccttttttataagga 20144645  T
Q  178 aggccaagaacttta 192  Q
    || | ||||||||||    
T  20144644 agacgaagaacttta 20144630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 205
Target Start/End: Complemental strand, 17736041 - 17735927
Alignment:
Q  91 tcaagcaaagttggcagcccatcttttgcatttggaagaaaaaagtacatagtaaattgacgcttatcttcgccttgcttataaggaaggccaagaactt 190  Q
    |||| ||||| || || |||||||||| | |  |||||||||||||| ||||  |||  ||||||||| | |||||| || |||||||| ||||| ||||    
T  17736041 tcaatcaaagctgacaacccatctttttcgtcaggaagaaaaaagtaaatagagaatgcacgcttatcattgccttgtttgtaaggaagaccaaggactt 17735942  T
Q  191 taaaatcatcgaaag 205  Q
    ||||| |||| ||||    
T  17735941 taaaaccatcaaaag 17735927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 200
Target Start/End: Complemental strand, 16722231 - 16722155
Alignment:
Q  124 ggaagaaaaaagtacatagtaaattgacgcttatcttcgccttgcttataaggaaggccaagaactttaaaatcatc 200  Q
    |||||||||||||| ||||  |||  ||| | ||||| |||||| ||||||||||| ||||| ||||||||| ||||    
T  16722231 ggaagaaaaaagtaaatagagaatgcacgttcatctttgccttgtttataaggaagaccaaggactttaaaaccatc 16722155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 200
Target Start/End: Complemental strand, 17699245 - 17699169
Alignment:
Q  124 ggaagaaaaaagtacatagtaaattgacgcttatcttcgccttgcttataaggaaggccaagaactttaaaatcatc 200  Q
    |||||||||||||| ||||  |||  ||| | ||||| |||||| ||||||||||| ||||| ||||||||| ||||    
T  17699245 ggaagaaaaaagtaaatagagaatgcacgttcatctttgccttgtttataaggaagaccaaggactttaaaaccatc 17699169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University