View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11870_high_6 (Length: 606)
Name: NF11870_high_6
Description: NF11870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11870_high_6 |
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| [»] scaffold0204 (3 HSPs) |
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Alignment Details
Target: scaffold0204 (Bit Score: 308; Significance: 1e-173; HSPs: 3)
Name: scaffold0204
Description:
Target: scaffold0204; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 19 - 387
Target Start/End: Original strand, 17955 - 18307
Alignment:
| Q |
19 |
gtttagttgtcttcttagctcaccaaaaagtagtttagactttgtataaaattgaaggtgtgagtatagtaatgttcatccttgataaagtattattttc |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
17955 |
gtttagttgtcttcttagctcaccaaaaagtagtttagactttgtataaaattgaaggtgtgagtatagtaatgttcatccttcataaagtattattttc |
18054 |
T |
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| Q |
119 |
tcttacatgcagctttctgtaatataaaagaaatggaagatgggtcttcccctacgggtggtggtactgtagataagggaagagctgagcaatataaagg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18055 |
tcttacatgcagctttctgtaatataaaagaaatggaagatgggtcttcccctacgggtggtggtactgtagataagggaagagctgagcaatataaagg |
18154 |
T |
|
| Q |
219 |
aagggtcactgttcatgttatcattgcttgcattgttgctgctactggtgggtccctttttggctatgatgttggtatttcaggttctgtcttaatccct |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18155 |
aagggtcactgttcatgttatcattgcttgcattgttgctgctactggtgggtccctttttggctatgatgttggtatttcaggttctgtcttaatccct |
18254 |
T |
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| Q |
319 |
tcactctcaaaacttcttcatattgattttatattaaccttcactttcaggttattattctggaataaa |
387 |
Q |
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||||||||| |||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
18255 |
tcactctca----------------attttatattcaccttcactttcaggttattattctggaataaa |
18307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0204; HSP #2
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 413 - 596
Target Start/End: Original strand, 18321 - 18503
Alignment:
| Q |
413 |
gttaaaaaacttcaacttacttgtgttgtttgtgtttgaaagctgaaaagggaaatacacatgggttgaatctcattttcttgattgttctttcatgtct |
512 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
18321 |
gttaaaaaacttcaact-acttgtgttgtttgtgtttgaaagctgaaaagggaaatacacatgggttgaatctcattttcttgagtgttctttcatgtct |
18419 |
T |
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| Q |
513 |
gtcatattttcaataatctgcacttctctcaactgcttaaagaccttttcctttattctaagatgcaacatcccagctttcttc |
596 |
Q |
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| T |
18420 |
gtcatattttcaataatctgcacttctctcaactgcttaaagaccttttcctttattctaagatgcaacttcccagctttcttc |
18503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0204; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 223 - 307
Target Start/End: Original strand, 5347 - 5431
Alignment:
| Q |
223 |
gtcactgttcatgttatcattgcttgcattgttgctgctactggtgggtccctttttggctatgatgttggtatttcaggttctg |
307 |
Q |
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||||| |||||||| ||| ||||||||||||||||||| ||||| ||||| || ||||||||||||||||||||||||||||||| |
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| T |
5347 |
gtcacagttcatgtcatccttgcttgcattgttgctgccactggagggtctctatttggctatgatgttggtatttcaggttctg |
5431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 308; Significance: 1e-173; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 19 - 387
Target Start/End: Original strand, 48330433 - 48330785
Alignment:
| Q |
19 |
gtttagttgtcttcttagctcaccaaaaagtagtttagactttgtataaaattgaaggtgtgagtatagtaatgttcatccttgataaagtattattttc |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
48330433 |
gtttagttgtcttcttagctcaccaaaaagtagtttagactttgtataaaattgaaggtgtgagtatagtaatgttcatccttcataaagtattattttc |
48330532 |
T |
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| Q |
119 |
tcttacatgcagctttctgtaatataaaagaaatggaagatgggtcttcccctacgggtggtggtactgtagataagggaagagctgagcaatataaagg |
218 |
Q |
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| T |
48330533 |
tcttacatgcagctttctgtaatataaaagaaatggaagatgggtcttcccctacgggtggtggtactgtagataagggaagagctgagcaatataaagg |
48330632 |
T |
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| Q |
219 |
aagggtcactgttcatgttatcattgcttgcattgttgctgctactggtgggtccctttttggctatgatgttggtatttcaggttctgtcttaatccct |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48330633 |
aagggtcactgttcatgttatcattgcttgcattgttgctgctactggtgggtccctttttggctatgatgttggtatttcaggttctgtcttaatccct |
48330732 |
T |
|
| Q |
319 |
tcactctcaaaacttcttcatattgattttatattaaccttcactttcaggttattattctggaataaa |
387 |
Q |
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||||||||| |||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
48330733 |
tcactctca----------------attttatattcaccttcactttcaggttattattctggaataaa |
48330785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 413 - 596
Target Start/End: Original strand, 48330799 - 48330981
Alignment:
| Q |
413 |
gttaaaaaacttcaacttacttgtgttgtttgtgtttgaaagctgaaaagggaaatacacatgggttgaatctcattttcttgattgttctttcatgtct |
512 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
48330799 |
gttaaaaaacttcaact-acttgtgttgtttgtgtttgaaagctgaaaagggaaatacacatgggttgaatctcattttcttgagtgttctttcatgtct |
48330897 |
T |
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| Q |
513 |
gtcatattttcaataatctgcacttctctcaactgcttaaagaccttttcctttattctaagatgcaacatcccagctttcttc |
596 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
48330898 |
gtcatattttcaataatctgcacttctctcaactgcttaaagaccttttcctttattctaagatgcaacttcccagctttcttc |
48330981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 175 - 334
Target Start/End: Original strand, 48342455 - 48342616
Alignment:
| Q |
175 |
ggtggtggtactgtagataag---ggaagagctgagcaatataaaggaagggtcactgttcatgttatcattgcttgcattgttgctgctactggtgggt |
271 |
Q |
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|||||||||||||| |||||| ||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48342455 |
ggtggtggtactgtggataagaacggaagggcagagcaatataagggaagggtcactgttcatgttatcattgcttgcattgttgctgctactggtgggt |
48342554 |
T |
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| Q |
272 |
ccctttttggctatgatgttggtatttcaggttctgtcttaatcccttcactctcaaaacttc |
334 |
Q |
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| T |
48342555 |
ccctttttggctatgacgttggtatttcaggtt-tgtcttaatcccttcactctcaaaacttc |
48342616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 447 - 483
Target Start/End: Original strand, 48342721 - 48342757
Alignment:
| Q |
447 |
tttgaaagctgaaaagggaaatacacatgggttgaat |
483 |
Q |
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| T |
48342721 |
tttgaaagctgaaaagggaaatacatatgagttgaat |
48342757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 211 - 305
Target Start/End: Complemental strand, 41416562 - 41416468
Alignment:
| Q |
211 |
tataaaggaagggtcactgttcatgttatcattgcttgcattgttgctgctactggtgggtccctttttggctatgatgttggtatttcaggttc |
305 |
Q |
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|||||||| ||||||||| ||||||||||||| ||||||||||||||||| || || || |||||||||||||||||||| ||||||||||| |
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| T |
41416562 |
tataaagggagggtcactccctatgttatcattgcatgcattgttgctgctacaggaggatcactttttggctatgatgttggaatttcaggttc |
41416468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 233 - 306
Target Start/End: Complemental strand, 36296889 - 36296816
Alignment:
| Q |
233 |
atgttatcattgcttgcattgttgctgctactggtgggtccctttttggctatgatgttggtatttcaggttct |
306 |
Q |
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||||||||||||||||||||||||| ||||| || || || |||||||||||||||||||| |||||||||||| |
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| T |
36296889 |
atgttatcattgcttgcattgttgcagctacagggggatcactttttggctatgatgttggaatttcaggttct |
36296816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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