View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11870_high_61 (Length: 206)
Name: NF11870_high_61
Description: NF11870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11870_high_61 |
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Alignment Details
Target: chr2 (Bit Score: 119; Significance: 5e-61; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 119; E-Value: 5e-61
Query Start/End: Original strand, 12 - 163
Target Start/End: Complemental strand, 38694624 - 38694461
Alignment:
| Q |
12 |
aagcaaaggtacatcatgttacattcttgatggataat------------agatagtggcatttaaaattactattttattgaaaatatttaaaaactcc |
99 |
Q |
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| T |
38694624 |
aagctaaggtacatcatgttacattcttgatggataattcaactatagaaagatagtggcatttaaaattactattttattgaaaatatttaaaaactcc |
38694525 |
T |
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| Q |
100 |
attttattactttggaattaatgcatttttaggaaaattcaacaaccgatcatccttgtacata |
163 |
Q |
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| T |
38694524 |
attttattactttggaattaatgcatttttaggaaaattcaacaaccgatcatccttgtacata |
38694461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 50 - 161
Target Start/End: Original strand, 38873639 - 38873750
Alignment:
| Q |
50 |
agatagtggcatttaaaattactattttattgaaaatatttaaaaactccattttattactttggaattaatgcatttttaggaaaattcaacaaccgat |
149 |
Q |
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| T |
38873639 |
agatagtggcatttaaaactactattttcaagaaaatattaaacaactccatttgattactttggaatttatgcatttttacgacaattgagcaactgat |
38873738 |
T |
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| Q |
150 |
catccttgtaca |
161 |
Q |
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| T |
38873739 |
catccatgtaca |
38873750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 50 - 105
Target Start/End: Original strand, 9820095 - 9820150
Alignment:
| Q |
50 |
agatagtggcatttaaaattactattttattgaaaatatttaaaaactccatttta |
105 |
Q |
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| T |
9820095 |
agatagtggcatttaaaattactattttcaacaaaatattcaacaactccatttta |
9820150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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