View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11870_high_63 (Length: 201)

Name: NF11870_high_63
Description: NF11870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11870_high_63
NF11870_high_63
[»] chr3 (18 HSPs)
chr3 (5-193)||(10987467-10987655)
chr3 (1-153)||(2124139-2124290)
chr3 (1-153)||(41387288-41387439)
chr3 (2-148)||(36626854-36626999)
chr3 (1-152)||(42632816-42632966)
chr3 (2-117)||(51825512-51825626)
chr3 (1-153)||(41386240-41386391)
chr3 (4-119)||(13077840-13077954)
chr3 (2-113)||(43103191-43103301)
chr3 (1-119)||(47807995-47808112)
chr3 (1-145)||(43102004-43102147)
chr3 (1-109)||(54653865-54653972)
chr3 (34-148)||(36627890-36628001)
chr3 (10-95)||(10986750-10986834)
chr3 (1-80)||(47806927-47807006)
chr3 (4-113)||(51824239-51824347)
chr3 (5-136)||(42633758-42633888)
chr3 (1-124)||(39190608-39190730)
[»] chr8 (13 HSPs)
chr8 (1-175)||(41867748-41867922)
chr8 (1-153)||(31624016-31624167)
chr8 (2-136)||(3237528-3237661)
chr8 (1-123)||(27750506-27750627)
chr8 (3-153)||(43275862-43276011)
chr8 (1-122)||(4807476-4807596)
chr8 (10-136)||(38589939-38590064)
chr8 (10-152)||(38590868-38591009)
chr8 (56-153)||(14821990-14822086)
chr8 (1-80)||(1570133-1570212)
chr8 (1-81)||(31625310-31625390)
chr8 (10-113)||(43277816-43277918)
chr8 (117-153)||(4807906-4807942)
[»] chr6 (3 HSPs)
chr6 (1-153)||(8411196-8411347)
chr6 (1-153)||(8412171-8412322)
chr6 (32-80)||(28931040-28931088)
[»] chr7 (21 HSPs)
chr7 (1-153)||(22744856-22745007)
chr7 (1-153)||(22061650-22061801)
chr7 (1-153)||(22746175-22746326)
chr7 (1-153)||(46673599-46673750)
chr7 (1-153)||(22060573-22060725)
chr7 (1-151)||(7146889-7147038)
chr7 (1-144)||(7147925-7148064)
chr7 (4-113)||(35128087-35128195)
chr7 (4-80)||(35127923-35127999)
chr7 (116-175)||(1973949-1974008)
chr7 (2-120)||(19279500-19279617)
chr7 (1-126)||(43006495-43006619)
chr7 (1-153)||(48671187-48671344)
chr7 (13-109)||(19278475-19278570)
chr7 (1-125)||(48672658-48672781)
chr7 (1-112)||(43007545-43007655)
chr7 (2-46)||(36702911-36702955)
chr7 (1-81)||(46674860-46674940)
chr7 (59-152)||(1970976-1971068)
chr7 (12-81)||(48754118-48754186)
chr7 (12-80)||(7347145-7347213)
[»] chr4 (14 HSPs)
chr4 (1-153)||(37559108-37559259)
chr4 (1-153)||(1273288-1273439)
chr4 (1-153)||(5688492-5688643)
chr4 (1-119)||(33377253-33377370)
chr4 (1-109)||(26788632-26788739)
chr4 (1-153)||(37560155-37560305)
chr4 (5-153)||(44126712-44126859)
chr4 (34-153)||(55952950-55953068)
chr4 (1-153)||(44128195-44128340)
chr4 (53-152)||(33376380-33376479)
chr4 (3-121)||(55953739-55953856)
chr4 (12-150)||(4373498-4373635)
chr4 (2-119)||(3217499-3217614)
chr4 (1-121)||(5687285-5687403)
[»] scaffold2127 (1 HSPs)
scaffold2127 (1-153)||(370-521)
[»] chr1 (14 HSPs)
chr1 (1-153)||(47136542-47136693)
chr1 (1-113)||(52181200-52181311)
chr1 (1-136)||(16217550-16217684)
chr1 (1-152)||(25787020-25787170)
chr1 (1-122)||(47411334-47411454)
chr1 (1-119)||(16218367-16218484)
chr1 (1-120)||(3978154-3978272)
chr1 (1-136)||(47411094-47411227)
chr1 (5-136)||(25786082-25786212)
chr1 (13-109)||(3979211-3979307)
chr1 (1-102)||(44339965-44340065)
chr1 (1-102)||(13568351-13568451)
chr1 (1-81)||(31859700-31859780)
chr1 (101-141)||(48467448-48467488)
[»] chr5 (10 HSPs)
chr5 (3-150)||(26404068-26404214)
chr5 (1-106)||(10084708-10084813)
chr5 (1-113)||(8762294-8762406)
chr5 (60-153)||(19569481-19569573)
chr5 (5-113)||(26403421-26403528)
chr5 (1-119)||(10085734-10085851)
chr5 (1-119)||(1663297-1663416)
chr5 (1-90)||(5062104-5062192)
chr5 (5-120)||(27893910-27894024)
chr5 (1-81)||(5061138-5061218)
[»] chr2 (9 HSPs)
chr2 (2-113)||(42027304-42027414)
chr2 (1-153)||(15650551-15650702)
chr2 (49-143)||(2581941-2582034)
chr2 (58-140)||(34039420-34039501)
chr2 (1-119)||(42028851-42028964)
chr2 (1-81)||(5564169-5564249)
chr2 (1-75)||(1624908-1624982)
chr2 (36-80)||(6208992-6209036)
chr2 (4-123)||(10477455-10477574)
[»] scaffold0007 (1 HSPs)
scaffold0007 (1-152)||(145727-145875)
[»] scaffold0369 (1 HSPs)
scaffold0369 (18-151)||(13031-13163)


Alignment Details
Target: chr3 (Bit Score: 173; Significance: 3e-93; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 5 - 193
Target Start/End: Complemental strand, 10987655 - 10987467
Alignment:
Q  5 gttaatattttgcaaaatctattaacttctttccacatgtcagttaagattagtgatcaacggttggatttaaaaaagcacacatgacatacagtggact 104  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  10987655 gttaatattttgcaaaatctgttaacttctttccacatgtcagttaagattagtgatcaacggttggatttaaaaaagcacacatggcatacagtggact 10987556  T
Q  105 cacaacataggataacttctatggtcatcttcttccctcttcatcttcaccttcaccaattcaacttccaattaattcaccttcacctt 193  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  10987555 cacaacataggataacttctatggtcatcttcttccctcttcatcttcaccttcaccaattcaacttccaaccaattcaccttcacctt 10987467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 2124139 - 2124290
Alignment:
Q  1 ctccgttaatattttgcaaaatctattaacttctttccacatgtcagttaagattagtgatcaacggttggatttaaaaaagcacacatgacatacagtg 100  Q
    |||||||| ||||||||||||||| |||||| |||  ||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||  |||    
T  2124139 ctccgttagtattttgcaaaatctgttaactccttgtcacatgtcatttaagattagtgatcaacggttggattt-aaaaagcacacatgacatatcgtg 2124237  T
Q  101 gactcacaacataggataacttctatggtcatcttcttccctcttcatcttca 153  Q
    || |||||||||| ||||||| ||||  |||||||||||||||||||||||||    
T  2124238 gattcacaacatatgataactcctattttcatcttcttccctcttcatcttca 2124290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 41387439 - 41387288
Alignment:
Q  1 ctccgttaatattttgcaaaatctattaacttctttccacatgtcagttaagattagtgatcaacggttggatttaaaaaagcacacatgacatacagtg 100  Q
    |||||||| ||||||||||||||| ||||||| || |||||||||| |||| ||| |||||||||||||||||||| |||||||||| || ||||| |||    
T  41387439 ctccgttagtattttgcaaaatctgttaactttttgccacatgtcatttaaaattggtgatcaacggttggattta-aaaagcacacttggcataccgtg 41387341  T
Q  101 gactcacaacataggataacttctatggtcatcttcttccctcttcatcttca 153  Q
    ||||||||||||| ||||||||| ||  |||||||||||| ||||||||||||    
T  41387340 gactcacaacatatgataacttccatcttcatcttcttccatcttcatcttca 41387288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 2 - 148
Target Start/End: Original strand, 36626854 - 36626999
Alignment:
Q  2 tccgttaatattttgcaaaatctattaacttctttccacatgtcagttaagattagtgatcaacggttggatttaaaaaagcacacatgacatacagtgg 101  Q
    ||||||| ||||||||||||| | ||| ||  ||||||||||||| ||||||||| |||| |||||||| ||||||||| ||||| ||  ||||| ||||    
T  36626854 tccgttagtattttgcaaaatttgttacctcttttccacatgtcatttaagattattgatgaacggttgaatttaaaaa-gcacagatagcataccgtgg 36626952  T
Q  102 actcacaacataggataacttctatggtcatcttcttccctcttcat 148  Q
    |||||||||||| |||||||| ||| |||||||||||||||||||||    
T  36626953 actcacaacatatgataacttttattgtcatcttcttccctcttcat 36626999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 1 - 152
Target Start/End: Original strand, 42632816 - 42632966
Alignment:
Q  1 ctccgttaatattttgcaaaatctattaacttctttccacatgtcagttaagattagtgatcaacggttggatttaaaaaagcacacatgacatacagtg 100  Q
    |||||||| ||||||||||||| | ||||||  || |||| ||||| |||||||| ||||||||||||||||||| |||||||   ||||| |||| |||    
T  42632816 ctccgttagtattttgcaaaatttgttaactctttgccacgtgtcatttaagattggtgatcaacggttggattt-aaaaagcctgcatgatataccgtg 42632914  T
Q  101 gactcacaacataggataacttctatggtcatcttcttccctcttcatcttc 152  Q
    ||||||||||||| ||||||||  ||| |||||||||||| |||||||||||    
T  42632915 gactcacaacatatgataactttcatgttcatcttcttccatcttcatcttc 42632966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 2 - 117
Target Start/End: Complemental strand, 51825626 - 51825512
Alignment:
Q  2 tccgttaatattttgcaaaatctattaacttctttccacatgtcagttaagattagtgatcaacggttggatttaaaaaagcacacatgacatacagtgg 101  Q
    ||||||| ||||||||||||||| ||||||  ||||||| |||||||||||||| |||||||| ||||| |||| |||||||||||||||||||| |||     
T  51825626 tccgttagtattttgcaaaatctgttaactcttttccacgtgtcagttaagattggtgatcaatggttgaattt-aaaaagcacacatgacatactgtga 51825528  T
Q  102 actcacaacataggat 117  Q
    ||||||| ||||||||    
T  51825527 actcacagcataggat 51825512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 41386240 - 41386391
Alignment:
Q  1 ctccgttaatattttgcaaaatctattaacttctttccacatgtcagttaagattagtgatcaacggttggatttaaaaaagcacacatgacatacagtg 100  Q
    |||||||| |||||||||| |||| ||||||  || |||||||||| |||| ||| || |||||||||||||||||||||| |||||||| ||||| |||    
T  41386240 ctccgttactattttgcaatatctgttaactctttgccacatgtcatttaatattggtaatcaacggttggatttaaaaaa-cacacatggcataccgtg 41386338  T
Q  101 gactcacaacataggataacttctatggtcatcttcttccctcttcatcttca 153  Q
    |||||||||  || ||||||||| ||  |||||||| ||| |||| |||||||    
T  41386339 gactcacaatgtatgataacttccatcttcatcttcctccatctttatcttca 41386391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 4 - 119
Target Start/End: Complemental strand, 13077954 - 13077840
Alignment:
Q  4 cgttaatattttgcaaaatctattaacttctttccacatgtcagttaagattagtgatcaacggttggatttaaaaaagcacacatgacatacagtggac 103  Q
    ||||||||||||||||||||||||||||  ||||||| |||||||||| ||  ||||||||||  |||||||| |||||||||||| ||||||  |||||    
T  13077954 cgttaatattttgcaaaatctattaactcttttccacgtgtcagttaatatatgtgatcaacgactggattta-aaaagcacacattacataccctggac 13077856  T
Q  104 tcacaacataggataa 119  Q
    |||||||||| |||||    
T  13077855 tcacaacatatgataa 13077840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 2 - 113
Target Start/End: Complemental strand, 43103301 - 43103191
Alignment:
Q  2 tccgttaatattttgcaaaatctattaacttctttccacatgtcagttaagattagtgatcaacggttggatttaaaaaagcacacatgacatacagtgg 101  Q
    ||||||| ||||||||||||| | |||||| |||||||||||||||||||||||  ||||| ||||||||||||| |||||||||||| |||||  ||||    
T  43103301 tccgttagtattttgcaaaatttgttaactcctttccacatgtcagttaagattcttgatcgacggttggattta-aaaagcacacataacatattgtgg 43103203  T
Q  102 actcacaacata 113  Q
    |||| |||||||    
T  43103202 actcccaacata 43103191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 47808112 - 47807995
Alignment:
Q  1 ctccgttaatattttgcaaaatctattaacttctttccacatgtcagttaagattagtgatcaacggttggatttaaaaaagcacaca-tgacatacagt 99  Q
    |||||||||||| |||||||| || ||||||  ||||||| |||||||||||||  |||||||||||||||||||| ||||||||||| |||||||| ||    
T  47808112 ctccgttaatatattgcaaaa-ctgttaactcttttccacgtgtcagttaagatcggtgatcaacggttggattta-aaaagcacacactgacataccgt 47808015  T
Q  100 ggactcacaacataggataa 119  Q
    |||||||||||||| |||||    
T  47808014 ggactcacaacatatgataa 47807995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 43102004 - 43102147
Alignment:
Q  1 ctccgttaatattttgcaaaatctattaacttctttccacatgtcagttaagattagtgatcaacggttggatttaaaaaagcacacatgacatacagtg 100  Q
    |||||||  ||||||||||||| | |||||| |||||||| || |||||||| ||  |||||||||| |  |||||||| |||||||||  ||||| |||    
T  43102004 ctccgtttgtattttgcaaaatatgttaactcctttccacgtgccagttaaggttcttgatcaacggataaatttaaaa-agcacacatagcataccgtg 43102102  T
Q  101 gactcacaacataggataacttctatggtcatcttcttccctctt 145  Q
    ||||||||||||| ||||| || ||| ||||||||||||||||||    
T  43102103 gactcacaacatacgataatttttattgtcatcttcttccctctt 43102147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 54653972 - 54653865
Alignment:
Q  1 ctccgttaatattttgcaaaatctattaacttctttccacatgtcagttaagattagtgatcaacggttggatttaaaaaagcacacatgacatacagtg 100  Q
    ||||||||  |||||||||||||| |||| |  ||||||||||||||||||||||  ||||||||||||||||||| ||||| ||||||| ||||| |||    
T  54653972 ctccgttaggattttgcaaaatctgttaattcatttccacatgtcagttaagattcttgatcaacggttggattta-aaaagaacacatgccatactgtg 54653874  T
Q  101 gactcacaa 109  Q
    |||||||||    
T  54653873 gactcacaa 54653865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 34 - 148
Target Start/End: Complemental strand, 36628001 - 36627890
Alignment:
Q  34 tttccacatgtcagttaagattagtgatcaacggttggatttaaaaaagcacacatgacatacagtggactcacaacataggataacttctatggtcatc 133  Q
    |||| |||||||| ||||||||  |||| |||||||||||||| ||||||||||||  ||||| ||||||||||||||||  ||||||||||| ||||||    
T  36628001 tttctacatgtcatttaagattgatgatgaacggttggattta-aaaagcacacatagcataccgtggactcacaacata--ataacttctattgtcatc 36627905  T
Q  134 ttcttccctcttcat 148  Q
    ||||||| |||||||    
T  36627904 ttcttccttcttcat 36627890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 10 - 95
Target Start/End: Original strand, 10986750 - 10986834
Alignment:
Q  10 tattttgcaaaatctattaacttctttccacatgtcagttaagattagtgatcaacggttggatttaaaaaagcacacatgacata 95  Q
    ||||||||||||| | ||||||  ||||||||||||||||||||||| ||||||||||||| |||| |||||||||||||| ||||    
T  10986750 tattttgcaaaatttgttaactcatttccacatgtcagttaagattaatgatcaacggttgaattt-aaaaagcacacatggcata 10986834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 47806927 - 47807006
Alignment:
Q  1 ctccgttaatattttgcaaaatctattaacttctttccacatgtcagttaagattagtgatcaacggttggatttaaaaa 80  Q
    |||||||| ||| |||||||||||||||||| |||| ||| |||||||||||||  |||||||| |||||||||||||||    
T  47806927 ctccgttagtatcttgcaaaatctattaactccttttcacgtgtcagttaagatcggtgatcaatggttggatttaaaaa 47807006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 4 - 113
Target Start/End: Original strand, 51824239 - 51824347
Alignment:
Q  4 cgttaatattttgcaaaatctattaacttctttccacatgtcagttaagattagtgatcaacggttggatttaaaaaagcacacatgacatacagtggac 103  Q
    ||||| |||||| |||||| | |||||| |||| ||| |||| ||||| ||||||||||||||||| ||||| ||||||||||| || ||||| ||| ||    
T  51824239 cgttagtattttacaaaatttgttaactccttttcacgtgtcggttaaaattagtgatcaacggttagattt-aaaaagcacacgtggcataccgtgaac 51824337  T
Q  104 tcacaacata 113  Q
    ||||||||||    
T  51824338 tcacaacata 51824347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 5 - 136
Target Start/End: Complemental strand, 42633888 - 42633758
Alignment:
Q  5 gttaatattttgcaaaatctattaacttctttccacatgtcagttaagattagtgatcaacggttggatttaaaaaagcacacatgacatacagtggact 104  Q
    |||| ||||| ||||||| | ||||||  || |||||||||| |||||||| || ||||||||||||||||| ||||||||||||  |||||  ||| ||    
T  42633888 gttagtatttggcaaaatttgttaactctttgccacatgtcatttaagattggtaatcaacggttggattta-aaaagcacacatagcataccatgggct 42633790  T
Q  105 cacaacataggataacttctatggtcatcttc 136  Q
    |||||||||  |||||||| ||  ||||||||    
T  42633789 cacaacatataataacttccatcttcatcttc 42633758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 39190730 - 39190608
Alignment:
Q  1 ctccgttaatattttgcaaaatctattaacttctttccacatgtcagttaagattagtgatcaacggttggatttaaaaaagcacacatgacatacagtg 100  Q
    |||||||||| ||||||||||| ||||||   |||||||||||||| ||| |||| ||||| ||  | ||||||||||||  ||||||||  ||||| ||    
T  39190730 ctccgttaattttttgcaaaatatattaaacactttccacatgtcatttacgatttgtgattaattgctggatttaaaaa--cacacatggtatacaatg 39190633  T
Q  101 gactcac-aacataggataacttct 124  Q
    ||  ||| |||||| ||||||||||    
T  39190632 gagacacaaacatatgataacttct 39190608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 135; Significance: 1e-70; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 135; E-Value: 1e-70
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 41867922 - 41867748
Alignment:
Q  1 ctccgttaatattttgcaaaatctattaacttctttccacatgtcagttaagattagtgatcaacggttggatttaaaaaagcacacatgacatacagtg 100  Q
    |||||||| ||||||||||||| | ||||||  |||||||||||||||||||||||||||||||||||||||||||||||| |||||||  |||||||||    
T  41867922 ctccgttagtattttgcaaaatttgttaactcttttccacatgtcagttaagattagtgatcaacggttggatttaaaaaaacacacattgcatacagtg 41867823  T
Q  101 gactcacaacataggataacttctatggtcatcttcttccctcttcatcttcaccttcaccaattcaacttccaa 175  Q
    || ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  41867822 gattcacaacataggataacttctatggtcatcttcttccctcttcgtcttcaccttcaccaattcaacttccaa 41867748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 31624016 - 31624167
Alignment:
Q  1 ctccgttaatattttgcaaaatctattaacttctttccacatgtcagttaagattagtgatcaacggttggatttaaaaaagcacacatgacatacagtg 100  Q
    |||||||| ||| ||||||||||| |||||| |||||||| ||||| ||||||||  ||||||||||||||||| || |||||||||||| ||||| ||     
T  31624016 ctccgttactatgttgcaaaatctgttaactcctttccacgtgtcacttaagattgatgatcaacggttggatt-aataaagcacacatggcatactgta 31624114  T
Q  101 gactcacaacataggataacttctatggtcatcttcttccctcttcatcttca 153  Q
    |||| |||||||| ||||| || ||| ||||||||||||||||||||||||||    
T  31624115 gacttacaacatatgataatttttattgtcatcttcttccctcttcatcttca 31624167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 75; E-Value: 9e-35
Query Start/End: Original strand, 2 - 136
Target Start/End: Original strand, 3237528 - 3237661
Alignment:
Q  2 tccgttaatattttgcaaaatctattaacttctttccacatgtcagttaagattagtgatcaacggttggatttaaaaaagcacacatgacatacagtgg 101  Q
    ||||||| ||||||||||||||| ||||||  ||||||| |||||||||||||| ||||||||| ||||||||| ||||||||||||||||| |||| ||    
T  3237528 tccgttagtattttgcaaaatctgttaactcatttccacgtgtcagttaagattggtgatcaacagttggattt-aaaaagcacacatgacaaacagggg 3237626  T
Q  102 actcacaacataggataacttctatggtcatcttc 136  Q
    |||||||||||| |||||  ||||| |||||||||    
T  3237627 actcacaacatatgataaaatctattgtcatcttc 3237661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 75; E-Value: 9e-35
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 27750627 - 27750506
Alignment:
Q  1 ctccgttaatattttgcaaaatctattaacttctttccacatgtcagttaagattagtgatcaacggttggatttaaaaaagcacacatgacatacagtg 100  Q
    |||||||| ||||||||||||||| |||| |  ||| ||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |||    
T  27750627 ctccgttagtattttgcaaaatctgttaattcattttcacgtgtcagttaagattggtgatcaacggttggattta-aaaagcacacatgacataccgtg 27750529  T
Q  101 gactcacaacataggataacttc 123  Q
    ||||||||||||| |||||||||    
T  27750528 gactcacaacatatgataacttc 27750506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 75; E-Value: 9e-35
Query Start/End: Original strand, 3 - 153
Target Start/End: Original strand, 43275862 - 43276011
Alignment:
Q  3 ccgttaatattttgcaaaatctattaacttctttccacatgtcagttaagattagtgatcaacggttggatttaaaaaagcacacatgacatacagtgga 102  Q
    |||||| ||||||| ||||||| ||||||  ||||||| ||||| |||| ||| ||||||||||||| ||||||| || |||||||||||||||  ||||    
T  43275862 ccgttagtattttgaaaaatctgttaactcatttccacgtgtcatttaaaattggtgatcaacggttagatttaagaa-gcacacatgacataccatgga 43275960  T
Q  103 ctcacaacataggataacttctatggtcatcttcttccctcttcatcttca 153  Q
    |||||||||||  ||||||||||| |||||||||||||||| |||||||||    
T  43275961 ctcacaacatattataacttctattgtcatcttcttccctcctcatcttca 43276011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 4807476 - 4807596
Alignment:
Q  1 ctccgttaatattttgcaaaatctattaacttctttccacatgtcagttaagattagtgatcaacggttggatttaaaaaagcacacatgacatacagtg 100  Q
    |||||||| ||||||||||||||||||||||  ||||||||||||| || ||||| ||||||||||||||||||| |||| ||||||||| ||||| |||    
T  4807476 ctccgttactattttgcaaaatctattaactcatttccacatgtcatttgagattggtgatcaacggttggattt-aaaaggcacacatgtcataccgtg 4807574  T
Q  101 gactcacaacataggataactt 122  Q
    ||||||||| ||| ||||||||    
T  4807575 gactcacaatatatgataactt 4807596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 10 - 136
Target Start/End: Original strand, 38589939 - 38590064
Alignment:
Q  10 tattttgcaaaatctattaacttctttccacatgtcagttaagattagtgatcaacggttggatttaaaaaagcacacatgacatacagtggactcacaa 109  Q
    ||||||||||||||| ||||||  ||  ||| ||||| |||||||| |||||||||||||| |||||||| |||||||||| ||||| ||||||||||||    
T  38589939 tattttgcaaaatctgttaactctttgtcacgtgtcatttaagattggtgatcaacggttgaatttaaaa-agcacacatggcataccgtggactcacaa 38590037  T
Q  110 cataggataacttctatggtcatcttc 136  Q
    |||| ||||||||| ||  ||||||||    
T  38590038 catatgataacttccatcttcatcttc 38590064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 10 - 152
Target Start/End: Complemental strand, 38591009 - 38590868
Alignment:
Q  10 tattttgcaaaatctattaacttctttccacatgtcagttaagattagtgatcaacggttggatttaaaaaagcacacatgacatacagtggactcacaa 109  Q
    ||||||||||||||| ||||||  ||  ||| ||||| |||||||| ||||||||| |||| ||||||||| || | ||||| |||| ||||||| || |    
T  38591009 tattttgcaaaatctgttaactctttgtcacgtgtcatttaagattggtgatcaacagttgaatttaaaaa-gcccgcatgatataccgtggacttacga 38590911  T
Q  110 cataggataacttctatggtcatcttcttccctcttcatcttc 152  Q
    |||| ||||| ||| ||| |||||||||||| |||||||||||    
T  38590910 catatgataatttccatgttcatcttcttccatcttcatcttc 38590868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 56 - 153
Target Start/End: Original strand, 14821990 - 14822086
Alignment:
Q  56 agtgatcaacggttggatttaaaaaagcacacatgacatacagtggactcacaacataggataacttctatggtcatcttcttccctcttcatcttca 153  Q
    |||||| |||||||||||||||||| || ||||||  ||   ||| ||||| || ||| |||||||||||| ||||||||||||||||||||||||||    
T  14821990 agtgattaacggttggatttaaaaa-gcgcacatgggatgtcgtgcactcaaaatatatgataacttctattgtcatcttcttccctcttcatcttca 14822086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 1570212 - 1570133
Alignment:
Q  1 ctccgttaatattttgcaaaatctattaacttctttccacatgtcagttaagattagtgatcaacggttggatttaaaaa 80  Q
    |||||||| ||||||||||||||| |||||| |||||||||||||  | ||||||  ||||||||||||  |||||||||    
T  1570212 ctccgttagtattttgcaaaatctgttaactcctttccacatgtccttcaagattgatgatcaacggttaaatttaaaaa 1570133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 31625390 - 31625310
Alignment:
Q  1 ctccgttaatattttgcaaaatctattaacttctttccacatgtcagttaagattagtgatcaacggttggatttaaaaaa 81  Q
    |||||||| ||||||||||||||| ||||||  ||||||  ||||| |||| |||  |||||||| ||||||||| |||||    
T  31625390 ctccgttattattttgcaaaatctgttaactattttccatgtgtcatttaaaattgatgatcaacagttggatttgaaaaa 31625310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 10 - 113
Target Start/End: Complemental strand, 43277918 - 43277816
Alignment:
Q  10 tattttgcaaaatctattaacttctttccacatgtcagttaagattagtgatcaacggttggatttaaaaaagcacacatgacatacagtggactcacaa 109  Q
    ||||||| | ||||| ||||||  ||||||  | ||| ||||||||  ||||||||||||| |||| |||||||||||||| ||||| |||| |||| ||    
T  43277918 tattttgtagaatctgttaactcatttccatgtttcatttaagattgatgatcaacggttgaattt-aaaaagcacacatggcataccgtgggctcagaa 43277820  T
Q  110 cata 113  Q
    ||||    
T  43277819 cata 43277816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 153
Target Start/End: Original strand, 4807906 - 4807942
Alignment:
Q  117 taacttctatggtcatcttcttccctcttcatcttca 153  Q
    |||||| ||| ||||||||||||||||||||||||||    
T  4807906 taacttatattgtcatcttcttccctcttcatcttca 4807942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 93; Significance: 2e-45; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 8411196 - 8411347
Alignment:
Q  1 ctccgttaatattttgcaaaatctattaacttctttccacatgtcagttaagattagtgatcaacggttggatttaaaaaagcacacatgacatacagtg 100  Q
    |||||||||||||||||||||| | |||||| |||||||||||||| |||||||| ||||||||||||||||||| || ||||| ||||||||||| |||    
T  8411196 ctccgttaatattttgcaaaatttgttaactcctttccacatgtcatttaagatttgtgatcaacggttggattt-aagaagcatacatgacatacggtg 8411294  T
Q  101 gactcacaacataggataacttctatggtcatcttcttccctcttcatcttca 153  Q
     ||||||||||||  ||||||||||| ||||||||||||||| ||||||||||    
T  8411295 tactcacaacatactataacttctattgtcatcttcttcccttttcatcttca 8411347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 8412322 - 8412171
Alignment:
Q  1 ctccgttaatattttgcaaaatctattaacttctttccacatgtcagttaagattagtgatcaacggttggatttaaaaaagcacacatgacatacagtg 100  Q
    |||||||| ||||||||||||||| |||||| |||||||||||||| |||||||| |||||||| ||||| |||| || ||||||||||  ||||| ||     
T  8412322 ctccgttagtattttgcaaaatctgttaactcctttccacatgtcatttaagattcgtgatcaatggttgaattt-aagaagcacacatagcataccgta 8412224  T
Q  101 gactcacaacataggataacttctatggtcatcttcttccctcttcatcttca 153  Q
    ||||||||||||| |||||||||||| ||||||||||||||||| ||||||||    
T  8412223 gactcacaacatacgataacttctattgtcatcttcttccctctccatcttca 8412171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 80
Target Start/End: Complemental strand, 28931088 - 28931040
Alignment:
Q  32 tctttccacatgtcagttaagattagtgatcaacggttggatttaaaaa 80  Q
    |||| |||||||||| ||||||||  ||||||| |||||||||||||||    
T  28931088 tcttgccacatgtcacttaagattgatgatcaagggttggatttaaaaa 28931040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 89; Significance: 4e-43; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 22744856 - 22745007
Alignment:
Q  1 ctccgttaatattttgcaaaatctattaacttctttccacatgtcagttaagattagtgatcaacggttggatttaaaaaagcacacatgacatacagtg 100  Q
    |||||||||||||||||||||| | |||||| |||||||||||||| |||||||| ||||||||||||||||||| || ||||| ||||| ||||| |||    
T  22744856 ctccgttaatattttgcaaaatttgttaactcctttccacatgtcatttaagatttgtgatcaacggttggattt-aagaagcatacatggcatacggtg 22744954  T
Q  101 gactcacaacataggataacttctatggtcatcttcttccctcttcatcttca 153  Q
     ||||||||||||  ||||||||||| ||||||||||||||| ||||||||||    
T  22744955 tactcacaacatactataacttctattgtcatcttcttcccttttcatcttca 22745007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 22061801 - 22061650
Alignment:
Q  1 ctccgttaatattttgcaaaatctattaacttctttccacatgtcagttaagattagtgatcaacggttggatttaaaaaagcacacatgacatacagtg 100  Q
    |||||||| |||||||||||| || |||||| ||| |||| ||||| |||||||| | |||||||||||||||||||||| ||||||||||||||  |||    
T  22061801 ctccgttagtattttgcaaaacctgttaactccttgccacgtgtcatttaagattggggatcaacggttggatttaaaaa-gcacacatgacatatcgtg 22061703  T
Q  101 gactcacaacataggataacttctatggtcatcttcttccctcttcatcttca 153  Q
    ||||| ||||||| ||||||| |||| ||||||||||||||||||||||||||    
T  22061702 gactcgcaacatatgataactcctattgtcatcttcttccctcttcatcttca 22061650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 22746326 - 22746175
Alignment:
Q  1 ctccgttaatattttgcaaaatctattaacttctttccacatgtcagttaagattagtgatcaacggttggatttaaaaaagcacacatgacatacagtg 100  Q
    |||||||| ||||||||||||| | |||||| |||||||||| ||| |||||||| |||||||| ||||| |||||| || ||||||||  ||||| |||    
T  22746326 ctccgttagtattttgcaaaatttgttaactcctttccacatatcatttaagattcgtgatcaatggttgaatttaagaa-gcacacatagcataccgtg 22746228  T
Q  101 gactcacaacataggataacttctatggtcatcttcttccctcttcatcttca 153  Q
    ||||||||||||| |||||||||||| ||||||||||||||||| ||||||||    
T  22746227 gactcacaacatacgataacttctattgtcatcttcttccctctccatcttca 22746175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 46673599 - 46673750
Alignment:
Q  1 ctccgttaatattttgcaaaatctattaacttctttccacatgtcagttaagattagtgatcaacggttggatttaaaaaagcacacatgacatacagtg 100  Q
    |||| ||| ||||||||||||||| ||||||| ||||||||||||| ||||||||  |||||||| |||||||||| ||| ||| ||||| ||||| |||    
T  46673599 ctccattagtattttgcaaaatctgttaacttttttccacatgtcacttaagattgatgatcaacagttggatttataaa-gcatacatggcatactgtg 46673697  T
Q  101 gactcacaacataggataacttctatggtcatcttcttccctcttcatcttca 153  Q
    ||||||||||||| |||||||| |||  |||||||||||||||||||||||||    
T  46673698 gactcacaacatatgataacttttattatcatcttcttccctcttcatcttca 46673750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 22060573 - 22060725
Alignment:
Q  1 ctccgttaatattttgcaaaatctattaacttctttccacatgtcagttaagattagtgatcaacggttggatttaaaaaagcacacatgacatacagt- 99  Q
    |||||||| |||||| |||||||| ||||||  |||||||  |||| |||||||| ||||||||||||||||||| |||||||||||||||||||| ||     
T  22060573 ctccgttagtattttacaaaatctgttaactcatttccacgagtcatttaagattggtgatcaacggttggattt-aaaaagcacacatgacataccgta 22060671  T
Q  100 ggactcacaacataggataacttctatggtcatcttcttccctcttcatcttca 153  Q
     |||| |||||||| |||||||||||| ||||||||||||| ||||||||||||    
T  22060672 tgacttacaacatatgataacttctattgtcatcttcttccttcttcatcttca 22060725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 7146889 - 7147038
Alignment:
Q  1 ctccgttaatattttgcaaaatctattaacttctttccacatgtcagttaagattagtgatcaacggttggatttaaaaaagcacacatgacatacagtg 100  Q
    |||| ||| ||||||||||||||| ||||||  ||||||||||||| ||||||||  |||| ||||||||||||| |||||||||||||  |||||  ||    
T  7146889 ctccattagtattttgcaaaatctgttaactcttttccacatgtcatttaagattgatgatgaacggttggattt-aaaaagcacacatagcataccatg 7146987  T
Q  101 gactcacaacataggataacttctatggtcatcttcttccctcttcatctt 151  Q
     ||| ||||||||  ||||||||||| ||||||||||||||||||||||||    
T  7146988 aacttacaacatataataacttctattgtcatcttcttccctcttcatctt 7147038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 7148064 - 7147925
Alignment:
Q  1 ctccgttaatattttgcaaaatctattaacttctttccacatgtcagttaagattagtgatcaacggttggatttaaaaaagcacacatgacatacagtg 100  Q
    |||||||| ||||||||||||| | ||| ||  ||||||||||||| ||||||||| |||| |||||||||||||||||| |||   ||  ||||| |||    
T  7148064 ctccgttagtattttgcaaaatttgttacctcttttccacatgtcatttaagattattgatgaacggttggatttaaaaa-gca---atagcataccgtg 7147969  T
Q  101 gactcacaacataggataacttctatggtcatcttcttccctct 144  Q
    ||||||||||||| ||||||||||||||||||||||||||||||    
T  7147968 gactcacaacatatgataacttctatggtcatcttcttccctct 7147925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 4 - 113
Target Start/End: Complemental strand, 35128195 - 35128087
Alignment:
Q  4 cgttaatattttgcaaaatctattaacttctttccacatgtcagttaagattagtgatcaacggttggatttaaaaaagcacacatgacatacagtggac 103  Q
    ||||| ||||||||||||||| |||||| |||||||| ||||| |||||||| |||||||||||||||||||| |||||||||||| ||||||  |||||    
T  35128195 cgttagtattttgcaaaatctgttaactcctttccacgtgtcatttaagattggtgatcaacggttggattta-aaaagcacacattacataccctggac 35128097  T
Q  104 tcacaacata 113  Q
     | |||||||    
T  35128096 gcgcaacata 35128087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 4 - 80
Target Start/End: Original strand, 35127923 - 35127999
Alignment:
Q  4 cgttaatattttgcaaaatctattaacttctttccacatgtcagttaagattagtgatcaacggttggatttaaaaa 80  Q
    ||||||||||||||||||||| |||||| |||||||| ||||||||||||| ||||||||||||||| |||||||||    
T  35127923 cgttaatattttgcaaaatctgttaactcctttccacgtgtcagttaagatcagtgatcaacggttgaatttaaaaa 35127999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 116 - 175
Target Start/End: Complemental strand, 1974008 - 1973949
Alignment:
Q  116 ataacttctatggtcatcttcttccctcttcatcttcaccttcaccaattcaacttccaa 175  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  1974008 ataacttctatggtcatcttcttccctcttcatcttcaccttcaccaattaaacttccaa 1973949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 2 - 120
Target Start/End: Complemental strand, 19279617 - 19279500
Alignment:
Q  2 tccgttaatattttgcaaaatctattaacttctttccacatgtcagttaagattagtgatcaacggttggatttaaaaaagcacacatgacatacagtgg 101  Q
    ||||||| ||||||||||||||| ||||||  ||||||| ||||||||||||||  |||||||||||| || ||||||||||||||||||||||   | |    
T  19279617 tccgttagtattttgcaaaatctgttaactcatttccacgtgtcagttaagattcttgatcaacggtt-gaattaaaaaagcacacatgacatatcatag 19279519  T
Q  102 actcacaacataggataac 120  Q
    |||||| ||||| ||||||    
T  19279518 actcactacatatgataac 19279500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 43006495 - 43006619
Alignment:
Q  1 ctccgttaatattttgcaaaatctattaacttctttccacatgtcagttaagattagtgatcaacggttggatttaaaaaagcacacatgacatacagtg 100  Q
    |||||||| |||||| |||||| | ||||||  ||| ||||||||| |||||||| ||||||||| |||| |||||| || ||||||||  ||||| |||    
T  43006495 ctccgttagtattttacaaaatttgttaactcattttcacatgtcatttaagattggtgatcaacagttgaatttaagaa-gcacacatagcataccgtg 43006593  T
Q  101 gactcacaacataggataacttctat 126  Q
    |||||  |||||||||||||||||||    
T  43006594 gactctgaacataggataacttctat 43006619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 48671187 - 48671344
Alignment:
Q  1 ctccgttaatattttgcaaaatctattaacttctttccacatgtcagttaagattagtgatcaacggttggatttaaaaaagca-----cacatgacata 95  Q
    |||||| | ||||||| ||||| | || ||| |||||||| ||||| |||||||| ||||||||| ||| |||||||||||  |     |||||||||||    
T  48671187 ctccgtcagtattttgaaaaatttgtttactcctttccacttgtcatttaagattggtgatcaacagttagatttaaaaaaaaaaaaaacacatgacata 48671286  T
Q  96 cagtggactcacaacataggataacttctatggtcatcttcttccctcttcatcttca 153  Q
      || |||||||||  || ||||||||||||  || ||||||||||||||||||||||    
T  48671287 tcgtagactcacaatgtatgataacttctattatcgtcttcttccctcttcatcttca 48671344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 13 - 109
Target Start/End: Original strand, 19278475 - 19278570
Alignment:
Q  13 tttgcaaaatctattaacttctttccacatgtcagttaagattagtgatcaacggttggatttaaaaaagcacacatgacatacagtggactcacaa 109  Q
    |||||||||||| |||| |  |||||||||||||||||| |||  |||||||||||||||||| |||||| ||||||  ||||| ||||||||||||    
T  19278475 tttgcaaaatctgttaattcatttccacatgtcagttaaaattcttgatcaacggttggattt-aaaaagaacacataccataccgtggactcacaa 19278570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 48672781 - 48672658
Alignment:
Q  1 ctccgttaatattttgcaaaatctattaacttctttccacatgtcagttaagattagtgatcaacggttggatttaaaaaagcacacatgacatacagtg 100  Q
    |||||||| ||||||||||||||| |||||| |||||||  ||||| |||||||| | | |||| ||||| |||| |||||||| |||||| |||  |||    
T  48672781 ctccgttagtattttgcaaaatctgttaactcctttccaattgtcatttaagattggcgttcaaaggttgaattt-aaaaagcagacatgaaatatcgtg 48672683  T
Q  101 gactcacaacataggataacttcta 125  Q
    ||||||||| ||| ||||| |||||    
T  48672682 gactcacaagatatgataatttcta 48672658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 43007655 - 43007545
Alignment:
Q  1 ctccgttaatattttgcaaaatctattaacttctttccacatgtcagttaagattagtgatcaacggttggatttaaaaaagcacacatgacatacagtg 100  Q
    |||||||| ||||||||||||||| ||||||  ||||| | ||||| |||| |||  |||||||||| |||||||| |||| ||||||||||||||  ||    
T  43007655 ctccgttagtattttgcaaaatctgttaactcatttccgcgtgtcatttaaaattgttgatcaacggctggatttacaaaa-cacacatgacataccatg 43007557  T
Q  101 gactcacaacat 112  Q
    |||| |||||||    
T  43007556 gacttacaacat 43007545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 36702955 - 36702911
Alignment:
Q  2 tccgttaatattttgcaaaatctattaacttctttccacatgtca 46  Q
    ||||||| ||||||||||||||| |||||||||||||||||||||    
T  36702955 tccgttattattttgcaaaatctgttaacttctttccacatgtca 36702911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 46674940 - 46674860
Alignment:
Q  1 ctccgttaatattttgcaaaatctattaacttctttccacatgtcagttaagattagtgatcaacggttggatttaaaaaa 81  Q
    |||||||| ||||||||||||||| ||||||  ||| ||  | ||| |||||||| |||||||  ||||||||||||||||    
T  46674940 ctccgttattattttgcaaaatctgttaactatttttcatgtctcatttaagattggtgatcattggttggatttaaaaaa 46674860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 59 - 152
Target Start/End: Original strand, 1970976 - 1971068
Alignment:
Q  59 gatcaacggttggatttaaaaaagcacacatgacatacagtggactcacaacataggataacttctatggtcatcttcttccctcttcatcttc 152  Q
    |||||| ||||| |||||||| ||||||||||||||||  || ||| | ||| || ||||| ||||||  |||||| ||| |||||||||||||    
T  1970976 gatcaatggttgaatttaaaa-agcacacatgacataccatgaactaataacttatgataaattctataatcatctcctttcctcttcatcttc 1971068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 12 - 81
Target Start/End: Original strand, 48754118 - 48754186
Alignment:
Q  12 ttttgcaaaatctattaacttctttccacatgtcagttaagattagtgatcaacggttggatttaaaaaa 81  Q
    ||||||||||||  |||||| ||| |||| ||||  |||||||| ||||||||||| |||||||||||||    
T  48754118 ttttgcaaaatccgttaactcctt-ccacgtgtcccttaagattggtgatcaacggctggatttaaaaaa 48754186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 80
Target Start/End: Complemental strand, 7347213 - 7347145
Alignment:
Q  12 ttttgcaaaatctattaacttctttccacatgtcagttaagattagtgatcaacggttggatttaaaaa 80  Q
    |||||||||||| |||| || ||| |||| |||   |||||||| ||||||||||||||||||| ||||    
T  7347213 ttttgcaaaatccattagctccttgccacgtgttttttaagattggtgatcaacggttggatttgaaaa 7347145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 89; Significance: 4e-43; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 37559108 - 37559259
Alignment:
Q  1 ctccgttaatattttgcaaaatctattaacttctttccacatgtcagttaagattagtgatcaacggttggatttaaaaaagcacacatgacatacagtg 100  Q
    |||||||| ||||||||||||||| ||||||| || |||||||||| |||| ||| ||||||||||||||||||| |||||||||||||| ||||| |||    
T  37559108 ctccgttagtattttgcaaaatctgttaactttttgccacatgtcacttaaaattggtgatcaacggttggattt-aaaaagcacacatggcataccgtg 37559206  T
Q  101 gactcacaacataggataacttctatggtcatcttcttccctcttcatcttca 153  Q
    ||||||||||||| ||||||||| ||  |||||||||||| ||||||||||||    
T  37559207 gactcacaacatatgataacttccatcttcatcttcttccatcttcatcttca 37559259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 1273439 - 1273288
Alignment:
Q  1 ctccgttaatattttgcaaaatctattaacttctttccacatgtcagttaagattagtgatcaacggttggatttaaaaaagcacacatgacatacagtg 100  Q
    |||||||| ||||||||||||||| ||| ||  ||||||| ||||| |||||||| |||||||||||||||||||||||| ||||||||| ||||| |||    
T  1273439 ctccgttagtattttgcaaaatctgttacctcatttccacgtgtcatttaagattggtgatcaacggttggatttaaaaa-gcacacatggcataccgtg 1273341  T
Q  101 gactcacaacataggataacttctatggtcatcttcttccctcttcatcttca 153  Q
    | ||||||||||||||||||||||||  ||||||| |||||| ||||||||||    
T  1273340 gtctcacaacataggataacttctattatcatcttgttcccttttcatcttca 1273288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 5688643 - 5688492
Alignment:
Q  1 ctccgttaatattttgcaaaatctattaacttctttccacatgtcagttaagattagtgatcaacggttggatttaaaaaagcacacatgacatacagtg 100  Q
    |||||||| ||||||||||||| | ||||||  ||||||| ||||| ||||||||  ||||||||||||||||||| ||| ||||||||| ||||| |||    
T  5688643 ctccgttagtattttgcaaaatttgttaactcatttccacgtgtcacttaagattgatgatcaacggttggatttataaa-gcacacatggcatactgtg 5688545  T
Q  101 gactcacaacataggataacttctatggtcatcttcttccctcttcatcttca 153  Q
    ||||||||||||| |||||||| ||| ||||||||||||||| ||||||||||    
T  5688544 gactcacaacatatgataacttttattgtcatcttcttccctattcatcttca 5688492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 33377370 - 33377253
Alignment:
Q  1 ctccgttaatattttgcaaaatctattaacttctttccacatgtcagttaagattagtgatcaacggttggatttaaaaaagcacacatgacatacagtg 100  Q
    |||||||| |||||| |||||||| |||||| |||||||| ||||  |||||||| |||||||||||||||||||| ||||||||||||| ||||| |||    
T  33377370 ctccgttagtattttacaaaatctgttaactcctttccacgtgtcgtttaagattggtgatcaacggttggattta-aaaagcacacatggcataccgtg 33377272  T
Q  101 gactcacaacataggataa 119  Q
    ||||||||||||| |||||    
T  33377271 gactcacaacatatgataa 33377253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 26788632 - 26788739
Alignment:
Q  1 ctccgttaatattttgcaaaatctattaacttctttccacatgtcagttaagattagtgatcaacggttggatttaaaaaagcacacatgacatacagtg 100  Q
    |||||||| ||||||||||||||| | ||||  ||||||| |||||||||||||| |||||||||||||| |||| |||||||||||||||||||| |||    
T  26788632 ctccgttagtattttgcaaaatctgtcaactcatttccacgtgtcagttaagattggtgatcaacggttgaattt-aaaaagcacacatgacataccgtg 26788730  T
Q  101 gactcacaa 109  Q
    |||||||||    
T  26788731 gactcacaa 26788739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 37560305 - 37560155
Alignment:
Q  1 ctccgttaatattttgcaaaatctattaacttctttccacatgtcagttaagattagtgatcaacggttggatttaaaaaagcacacatgacatacagtg 100  Q
    |||||||| |||||||||| |||| ||||||  || |||||||||| |||| ||| |||||||| |||||||||||||||| |||||||| ||||| |||    
T  37560305 ctccgttactattttgcaatatctgttaactctttgccacatgtca-ttaatattggtgatcaatggttggatttaaaaaa-cacacatggcataccgtg 37560208  T
Q  101 gactcacaacataggataacttctatggtcatcttcttccctcttcatcttca 153  Q
    |||||||||| || ||||||||| ||  |||||||| ||| ||||||||||||    
T  37560207 gactcacaacgtatgataacttccatcttcatcttcctccatcttcatcttca 37560155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 5 - 153
Target Start/End: Original strand, 44126712 - 44126859
Alignment:
Q  5 gttaatattttgcaaaatctattaacttctttccacatgtcagttaagattagtgatcaacggttggatttaaaaaagcacacatgacatacagtggact 104  Q
    |||| ||||||||||||||| |||||| |||||||||||||  | ||||||  |||||||| |||  ||||||||| ||| ||||   |||| |||||||    
T  44126712 gttagtattttgcaaaatctgttaactcctttccacatgtccttcaagattgatgatcaacagttaaatttaaaaa-gcatacatcggatactgtggact 44126810  T
Q  105 cacaacataggataacttctatggtcatcttcttccctcttcatcttca 153  Q
    ||||||||| ||||| || ||| ||||||||||||||||||||||||||    
T  44126811 cacaacatatgataatttatattgtcatcttcttccctcttcatcttca 44126859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 34 - 153
Target Start/End: Original strand, 55952950 - 55953068
Alignment:
Q  34 tttccacatgtcagttaagattagtgatcaacggttggatttaaaaaagcacacatgacatacagtggactcacaacataggataacttctatggtcatc 133  Q
    ||||||| ||||| |||||||| ||||| |||| || ||||||| || ||||||||||||||| ||| ||||||||||||  ||||||||||| ||||||    
T  55952950 tttccacgtgtcatttaagattggtgataaacgattagatttaataa-gcacacatgacataccgtgaactcacaacatattataacttctattgtcatc 55953048  T
Q  134 ttcttccctcttcatcttca 153  Q
    |||||||||| |||||||||    
T  55953049 ttcttccctcctcatcttca 55953068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 44128340 - 44128195
Alignment:
Q  1 ctccgttaatattttgcaaaatctattaacttctttccacatgtcagttaagattagtgatcaacggttggatttaaaaaagcacacatgacatacagtg 100  Q
    |||||||| ||||||||||||||| ||||||  ||||||||||||| | |||||| |||||||||||||||||||| ||||||||||||  |      ||    
T  44128340 ctccgttagtattttgcaaaatctgttaactcatttccacatgtcattcaagattggtgatcaacggttggattta-aaaagcacacatagc------tg 44128248  T
Q  101 gactcacaacataggataacttctatggtcatcttcttccctcttcatcttca 153  Q
    ||| ||||||||| ||||| || | |  |||||||||||||||||||||||||    
T  44128247 gacacacaacatatgataatttatgttatcatcttcttccctcttcatcttca 44128195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 53 - 152
Target Start/End: Original strand, 33376380 - 33376479
Alignment:
Q  53 attagtgatcaacggttggatttaaaaaagcacacatgacatacagtggactcacaacataggataacttctatggtcatcttcttccctcttcatcttc 152  Q
    ||||| |||||| |||||| |||  |||||||||||| | ||||| ||||||||||||||||||| |||||||| ||||||||||||||||| |||||||    
T  33376380 attagggatcaatggttgggttttgaaaagcacacataaaatacaatggactcacaacataggatgacttctattgtcatcttcttccctctacatcttc 33376479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 3 - 121
Target Start/End: Complemental strand, 55953856 - 55953739
Alignment:
Q  3 ccgttaatattttgcaaaatctattaacttctttccacatgtcagttaagattagtgatcaacggttggatttaaaaaagcacacatgacatacagtgga 102  Q
    |||||| ||||||| ||||||| |||| |  ||||||| ||||| |||||||| |||||||||||||| |||| |||||||||||||| ||||| ||||     
T  55953856 ccgttagtattttgtaaaatctgttaattcatttccacgtgtcatttaagattggtgatcaacggttgaattt-aaaaagcacacatggcataccgtggg 55953758  T
Q  103 ctcacaacataggataact 121  Q
    ||||||||||| |||||||    
T  55953757 ctcacaacatatgataact 55953739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 12 - 150
Target Start/End: Original strand, 4373498 - 4373635
Alignment:
Q  12 ttttgcaaaatctattaacttctttccacatgtcagttaagattagtgatcaacggttggatttaaaaaagcacacatgacatacagtggactcacaaca 111  Q
    ||||||||||||  ||||| ||||||||| ||||| ||| |||| ||||| || || ||||||| |||| |||||||||  ||||| |||||||||||||    
T  4373498 ttttgcaaaatccgttaacctctttccacgtgtcatttaggattggtgattaatggctggatttgaaaa-gcacacatggtatacaatggactcacaaca 4373596  T
Q  112 taggataacttctatggtcatcttcttccctcttcatct 150  Q
    ||  ||||| || |  ||||||||| |||||||||||||    
T  4373597 tataataacctcgactgtcatcttcatccctcttcatct 4373635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 2 - 119
Target Start/End: Complemental strand, 3217614 - 3217499
Alignment:
Q  2 tccgttaatattttgcaaaatctattaacttctttccacatgtcagttaagattagtgatcaacggttggatttaaaaaagcacacatgacatacagtgg 101  Q
    ||||||| |||||||| ||||||  ||||| ||| |||| |||||||||| |||  ||||||||||||||||||| |||||||||  |||||||| |||     
T  3217614 tccgttagtattttgccaaatctggtaactcctt-ccacgtgtcagttaaaattgatgatcaacggttggattta-aaaagcacatgtgacataccgtga 3217517  T
Q  102 actcacaacataggataa 119  Q
    |||||||||||| |||||    
T  3217516 actcacaacatatgataa 3217499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 5687285 - 5687403
Alignment:
Q  1 ctccgttaatattttgcaaaatctattaacttctttccacatgtcagttaagattagtgatcaacggttggatttaaaaaagcacacatgacatacagtg 100  Q
    |||||||| ||||||||||||||| ||||| | ||| || |||||| |||||||| ||||||||| |||  |||| ||||| ||||||||| ||||  |     
T  5687285 ctccgttattattttgcaaaatctgttaac-tattttcatatgtcatttaagattggtgatcaacagttaaatttgaaaaa-cacacatgatataccatt 5687382  T
Q  101 gactcacaacataggataact 121  Q
    |||| || ||||| |||||||    
T  5687383 gacttacgacatatgataact 5687403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2127 (Bit Score: 81; Significance: 2e-38; HSPs: 1)
Name: scaffold2127
Description:

Target: scaffold2127; HSP #1
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 521 - 370
Alignment:
Q  1 ctccgttaatattttgcaaaatctattaacttctttccacatgtcagttaagattagtgatcaacggttggatttaaaaaagcacacatgacatacagtg 100  Q
    |||||||| ||||||| ||||||| ||||||||||||||  ||||| ||||||||  |||| |||||||||||||| ||| ||||||||| ||||| |||    
T  521 ctccgttagtattttgaaaaatctgttaacttctttccatgtgtcacttaagattgatgatgaacggttggatttataaa-gcacacatggcataccgtg 423  T
Q  101 gactcacaacataggataacttctatggtcatcttcttccctcttcatcttca 153  Q
    ||||||||||||| |||||||| ||| |||||||||||||||||| |||||||    
T  422 gactcacaacatatgataacttttattgtcatcttcttccctcttaatcttca 370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 81; Significance: 2e-38; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 47136693 - 47136542
Alignment:
Q  1 ctccgttaatattttgcaaaatctattaacttctttccacatgtcagttaagattagtgatcaacggttggatttaaaaaagcacacatgacatacagtg 100  Q
    |||||||| ||||||| ||||||| ||||||||||||||  ||||| ||||||||  |||| |||||||||||||| ||| ||||||||| ||||| |||    
T  47136693 ctccgttagtattttgaaaaatctgttaacttctttccatgtgtcacttaagattgatgatgaacggttggatttataaa-gcacacatggcataccgtg 47136595  T
Q  101 gactcacaacataggataacttctatggtcatcttcttccctcttcatcttca 153  Q
    ||||||||||||| |||||||| ||| |||||||||||||||||| |||||||    
T  47136594 gactcacaacatatgataacttttattgtcatcttcttccctcttaatcttca 47136542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 52181311 - 52181200
Alignment:
Q  1 ctccgttaatattttgcaaaatctattaacttctttccacatgtcagttaagattagtgatcaacggttggatttaaaaaagcacacatgacatacagtg 100  Q
    |||||||||||||||||||||||| ||||||  ||  ||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||| |||    
T  52181311 ctccgttaatattttgcaaaatctgttaactctttgtcacatgtcatttaagattggtgatcaacggttggattta-aaaagcacacatgacataccgtg 52181213  T
Q  101 gactcacaacata 113  Q
     ||||||||||||    
T  52181212 aactcacaacata 52181200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 16217550 - 16217684
Alignment:
Q  1 ctccgttaatattttgcaaaatctattaacttctttccacatgtcagttaagattagtgatcaacggttggatttaaaaaagcacacatgacatacagtg 100  Q
    |||||||| ||||||||||||||| ||||||  ||||||| ||||| |||||||| | ||||||||||| ||||| |||||||||||||| ||||| |||    
T  16217550 ctccgttagtattttgcaaaatctgttaactcatttccacgtgtcatttaagattggcgatcaacggttagattt-aaaaagcacacatggcataccgtg 16217648  T
Q  101 gactcacaacataggataacttctatggtcatcttc 136  Q
    |||||||||| ||  ||||||||||| |||||||||    
T  16217649 gactcacaacgtaccataacttctattgtcatcttc 16217684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 25787170 - 25787020
Alignment:
Q  1 ctccgttaatattttgcaaaatctattaacttctttccacatgtcagttaagattagtgatcaacggttggatttaaaaaagcacacatgacatacagtg 100  Q
    |||||||| ||||||||||||| | ||||||  ||  ||| ||||| |||||||| |||||||||||||||||||||||| || | ||||| |||| |||    
T  25787170 ctccgttagtattttgcaaaatttgttaactctttgtcacgtgtcatttaagattggtgatcaacggttggatttaaaaa-gcccgcatgatataccgtg 25787072  T
Q  101 gactcacaacataggataacttctatggtcatcttcttccctcttcatcttc 152  Q
    ||||||||||||| ||||||||| ||| |||||||||||  |||||||||||    
T  25787071 gactcacaacatatgataacttccatgttcatcttcttcaatcttcatcttc 25787020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 47411454 - 47411334
Alignment:
Q  1 ctccgttaatattttgcaaaatctattaacttctttccacatgtcagttaagattagtgatcaacggttggatttaaaaaagcacacatgacatacagtg 100  Q
    |||||||| ||||||||||||||| ||||||  || |||||||||| |||||||| |||||||||||||| |||| |||||||||||||||||||  |||    
T  47411454 ctccgttagtattttgcaaaatctgttaactctttgccacatgtcatttaagattggtgatcaacggttgaattt-aaaaagcacacatgacatatcgtg 47411356  T
Q  101 gactcacaacataggataactt 122  Q
    ||||||||| ||| ||||||||    
T  47411355 gactcacaagatacgataactt 47411334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 16218484 - 16218367
Alignment:
Q  1 ctccgttaatattttgcaaaatctattaacttctttccacatgtcagttaagattagtgatcaacggttggatttaaaaaagcacacatgacatacagtg 100  Q
    |||||||| ||||||||||||||||||||||  |||||| |||||| |||| ||| |||||||||||||| |||| ||||||||||| |||||||| ||     
T  16218484 ctccgttagtattttgcaaaatctattaactcatttccatatgtcatttaaaattggtgatcaacggttgaattt-aaaaagcacacgtgacataccgta 16218386  T
Q  101 gactcacaacataggataa 119  Q
    ||||||||||||| |||||    
T  16218385 gactcacaacatatgataa 16218367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 3978154 - 3978272
Alignment:
Q  1 ctccgttaatattttgcaaaatctattaacttctttccacatgtcagttaagattagtgatcaacggttggatttaaaaaagcacacatgacatacagtg 100  Q
    ||||||||| | |||||||||||| ||||||  |||| |||||||||||||||||  ||||||| |||||||||| |||||| ||||||| ||||| |||    
T  3978154 ctccgttaaaaatttgcaaaatctgttaactcatttctacatgtcagttaagattcttgatcaatggttggattt-aaaaagaacacatgccataccgtg 3978252  T
Q  101 gactcacaacataggataac 120  Q
    ||||||||||||| ||||||    
T  3978253 gactcacaacatatgataac 3978272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 47411094 - 47411227
Alignment:
Q  1 ctccgttaatattttgcaaaatctattaacttctttccacatgtcagttaagattagtgatcaacggttggatttaaaaaagcacacatgacatacagtg 100  Q
    |||||||| ||||||||||||| | ||||||  ||  ||||||||| |||||||| ||||||||| |||||||||  ||||||||||||||||||  |||    
T  47411094 ctccgttagtattttgcaaaatttgttaactctttgtcacatgtcatttaagattggtgatcaacagttggattt--aaaagcacacatgacatatcgtg 47411191  T
Q  101 gactcacaacataggataacttctatggtcatcttc 136  Q
    |||||| |||||| ||||||||| ||  ||||||||    
T  47411192 gactcataacatatgataacttccatcttcatcttc 47411227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 5 - 136
Target Start/End: Original strand, 25786082 - 25786212
Alignment:
Q  5 gttaatattttgcaaaatctattaacttctttccacatgtcagttaagattagtgatcaacggttggatttaaaaaagcacacatgacatacagtggact 104  Q
    |||| ||||||||||||| | ||||||  ||  ||| ||||| |||||||| ||||||||||||||||||| ||||||||||||||||||||  ||||||    
T  25786082 gttagtattttgcaaaatttgttaactctttgtcacgtgtcatttaagattggtgatcaacggttggattt-aaaaagcacacatgacataccatggact 25786180  T
Q  105 cacaacataggataacttctatggtcatcttc 136  Q
    |||||||||  |||||||| ||  ||||||||    
T  25786181 cacaacatataataacttccatcttcatcttc 25786212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 13 - 109
Target Start/End: Complemental strand, 3979307 - 3979211
Alignment:
Q  13 tttgcaaaatctattaacttctttccacatgtcagttaagatt-agtgatcaacggttggatttaaaaaagcacacatgacatacagtggactcacaa 109  Q
    ||||||||||||||||| |  ||||||||||||| ||||||||   |||||||||||||||||| |||||| ||||||| ||||| ||||||||||||    
T  3979307 tttgcaaaatctattaattcatttccacatgtcacttaagattctttgatcaacggttggattt-aaaaagaacacatgccataccgtggactcacaa 3979211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 44340065 - 44339965
Alignment:
Q  1 ctccgttaatattttgcaaaatctattaacttctttccacatgtcagttaagattagtgatcaacggttggatttaaaaaagcacacatgacatacagtg 100  Q
    |||||||||| ||||||||||||| ||||   ||||||||| |||| ||| |||| |||||||| |  ||||||||||||| ||||||||| ||||| ||    
T  44340065 ctccgttaattttttgcaaaatctcttaaacactttccacacgtcatttaggatttgtgatcaatgactggatttaaaaaa-cacacatgatatacaatg 44339967  T
Q  101 ga 102  Q
    ||    
T  44339966 ga 44339965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 13568451 - 13568351
Alignment:
Q  1 ctccgttaatattttgcaaaatctattaacttctttccacatgtcagttaagattagtgatcaacggttggatttaaaaaagcacacatgacatacagtg 100  Q
    |||||||||| ||||||||||||||||||   |||||||||||||| |||  ||| |||||||| |  || || ||||||| |||||||| |||||| ||    
T  13568451 ctccgttaattttttgcaaaatctattaaacactttccacatgtcatttagaatttgtgatcaatgactgaatataaaaaa-cacacatggcatacaatg 13568353  T
Q  101 ga 102  Q
    ||    
T  13568352 ga 13568351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 31859700 - 31859780
Alignment:
Q  1 ctccgttaatattttgcaaaatctattaacttctttccacatgtcagttaagattagtgatcaacggttggatttaaaaaa 81  Q
    |||| ||||| ||||||||||||| ||||    ||| ||||||||| ||| |||| |||||||| || |||||||||||||    
T  31859700 ctccattaattttttgcaaaatctgttaagcatttttcacatgtcatttaggatttgtgatcaatggctggatttaaaaaa 31859780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 141
Target Start/End: Original strand, 48467448 - 48467488
Alignment:
Q  101 gactcacaacataggataacttctatggtcatcttcttccc 141  Q
    ||||||||||||| |||||||| ||| ||||||||||||||    
T  48467448 gactcacaacatatgataacttatattgtcatcttcttccc 48467488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 1e-30; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 3 - 150
Target Start/End: Complemental strand, 26404214 - 26404068
Alignment:
Q  3 ccgttaatattttgcaaaatctattaacttctttccacatgtcagttaagattagtgatcaacggttggatttaaaaaagcacacatgacatacagtgga 102  Q
    |||||| |||||| |||||||||||||||  ||||||| ||||| ||||||||  ||||||||| ||||||||||||||  ||||||| ||||| |||||    
T  26404214 ccgttattattttacaaaatctattaactcatttccacgtgtcatttaagattgatgatcaacgtttggatttaaaaaa-tacacatggcataccgtgga 26404116  T
Q  103 ctcacaacataggataacttctatggtcatcttcttccctcttcatct 150  Q
    |||| |||| | ||||| ||| || |||||||||||||||||||||||    
T  26404115 ctcataacacatgataatttccattgtcatcttcttccctcttcatct 26404068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 10084708 - 10084813
Alignment:
Q  1 ctccgttaatattttgcaaaatctattaacttctttccacatgtcagttaagattagtgatcaacggttggatttaaaaaagcacacatgacatacagtg 100  Q
    |||||||||||||||||||||||| |||||| |||| ||| |||||||||||||| ||||||||||||| || |||||||||||| |||  ||||| |||    
T  10084708 ctccgttaatattttgcaaaatctgttaactccttttcacgtgtcagttaagattggtgatcaacggttagacttaaaaaagcacgcatagcataccgtg 10084807  T
Q  101 gactca 106  Q
    ||||||    
T  10084808 gactca 10084813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 8762406 - 8762294
Alignment:
Q  1 ctccgttaatattttgcaaaatctattaacttctttccacatgtcagttaagattagtgatcaacggttggatttaaaaaagcacacatgacatacagtg 100  Q
    |||||||||||||||||||||||| ||||||  ||||||| ||||| ||||||||   ||||||| ||||||||||||||||||||||| ||| ||  ||    
T  8762406 ctccgttaatattttgcaaaatctgttaactcttttccacgtgtcatttaagattgacgatcaacagttggatttaaaaaagcacacattacaaaccctg 8762307  T
Q  101 gactcacaacata 113  Q
    ||| |||||||||    
T  8762306 gacgcacaacata 8762294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 60 - 153
Target Start/End: Complemental strand, 19569573 - 19569481
Alignment:
Q  60 atcaacggttggatttaaaaaagcacacatgacatacagtggactcacaacataggataacttctatggtcatcttcttccctcttcatcttca 153  Q
    ||||||||||||||||||||| | ||||||| ||||| |||||||||||||||| ||||||||| ||  |||||||||||| ||||||||||||    
T  19569573 atcaacggttggatttaaaaa-gaacacatggcataccgtggactcacaacatatgataacttccatcttcatcttcttccatcttcatcttca 19569481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 5 - 113
Target Start/End: Original strand, 26403421 - 26403528
Alignment:
Q  5 gttaatattttgcaaaatctattaacttctttccacatgtcagttaagattagtgatcaacggttggatttaaaaaagcacacatgacatacagtggact 104  Q
    |||||||| ||||||||||| ||||||  ||||||||||||| |||| |||  ||||||| ||||| |||||||||| |||||||||||||| |||||||    
T  26403421 gttaatatattgcaaaatctgttaactcttttccacatgtcatttaaaattgatgatcaatggttgaatttaaaaaa-cacacatgacataccgtggact 26403519  T
Q  105 cacaacata 113  Q
     ||||||||    
T  26403520 tacaacata 26403528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 10085851 - 10085734
Alignment:
Q  1 ctccgttaatattttgcaaaatctattaacttctttccacatgtcagttaagattagtgatcaacggttggatttaaaaaagcacacatgacatacagtg 100  Q
    |||||||| ||||||||||||||| ||||||  ||||||| ||||||||||||||  ||||||||  ||||||||| ||||||||||  ||||||| |||    
T  10085851 ctccgttagtattttgcaaaatctgttaactcttttccacgtgtcagttaagattgatgatcaacaattggattta-aaaagcacacgcgacataccgtg 10085753  T
Q  101 gactcacaacataggataa 119  Q
     | |||||||||| |||||    
T  10085752 aattcacaacatatgataa 10085734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 1663297 - 1663416
Alignment:
Q  1 ctccgttaatattttgcaaaa-tctattaacttctttccacatgtcagttaagattagtgatcaacggttggatttaaaaaagcacaca-tgacatacag 98  Q
    |||||||||||| |||||||| | | |||||| |||||||| ||| |||||||||  ||||||||||||||||||| |||||||||||| || ||||  |    
T  1663297 ctccgttaatatattgcaaaaatatgttaactcctttccacgtgttagttaagatcggtgatcaacggttggattt-aaaaagcacacactggcatatcg 1663395  T
Q  99 tggactcacaacataggataa 119  Q
    |||||||| |||||| |||||    
T  1663396 tggactcagaacatatgataa 1663416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 5062192 - 5062104
Alignment:
Q  1 ctccgttaatattttgcaaaatctattaacttctttccacatgtcagttaagattagtgatcaacggttggatttaaaaaagcacacatg 90  Q
    |||||||||| ||||||||||||| ||||   |||||||||||||| ||| |||| |||||||| || ||||||||||||| ||||||||    
T  5062192 ctccgttaattttttgcaaaatctgttaaacactttccacatgtcatttaggatttgtgatcaatggctggatttaaaaaa-cacacatg 5062104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 5 - 120
Target Start/End: Complemental strand, 27894024 - 27893910
Alignment:
Q  5 gttaatattttgcaaaatctattaacttctttccacatgtcagttaagattagtgatcaacggttggatttaaaaaagcacacatgacatacagtggact 104  Q
    |||| ||||||||||||| | ||||||   |||||| | ||||||||||||  ||||||||| ||||||||| ||||||| |||||| ||||  | ||||    
T  27894024 gttagtattttgcaaaatttgttaactcaattccacgtatcagttaagattcttgatcaacgattggattta-aaaagcatacatgagataccatagact 27893926  T
Q  105 cacaacataggataac 120  Q
    ||||||||| ||||||    
T  27893925 cacaacatatgataac 27893910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 5061138 - 5061218
Alignment:
Q  1 ctccgttaatattttgcaaaatctattaacttctttccacatgtcagttaagattagtgatcaacggttggatttaaaaaa 81  Q
    |||||||||| ||||||||||||| ||||   |||| ||||||||| ||| ||||  ||||||| || |||||||||||||    
T  5061138 ctccgttaattttttgcaaaatctgttaaacacttttcacatgtcatttaggatttatgatcaatggctggatttaaaaaa 5061218  T

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Target: chr2 (Bit Score: 68; Significance: 1e-30; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 2 - 113
Target Start/End: Original strand, 42027304 - 42027414
Alignment:
Q  2 tccgttaatattttgcaaaatctattaacttctttccacatgtcagttaagattagtgatcaacggttggatttaaaaaagcacacatgacatacagtgg 101  Q
    ||||||| ||||||||||||||| ||||||  ||||||||||||||||||||||  |||||||||||||||||| |||||||||||||||||||  ||||    
T  42027304 tccgttagtattttgcaaaatctgttaactcttttccacatgtcagttaagattcttgatcaacggttggattt-aaaaagcacacatgacataatgtgg 42027402  T
Q  102 actcacaacata 113  Q
    |||| |||||||    
T  42027403 actcccaacata 42027414  T

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Target: chr2; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 15650551 - 15650702
Alignment:
Q  1 ctccgttaatattttgcaaaatctattaacttctttccacatgtcagttaagattagtgatcaacggttggatttaaaaaagcacacatgacatacagtg 100  Q
    |||||||| ||||||||||||| | |||||| |||||||||||||  | |||||| ||||||||  ||| |||||||||   || ||||  ||||| |||    
T  15650551 ctccgttagtattttgcaaaatttgttaactcctttccacatgtccttcaagattggtgatcaatagttagatttaaaact-catacatagcatactgtg 15650649  T
Q  101 gactcacaacataggataacttctatggtcatcttcttccctcttcatcttca 153  Q
    ||||||||||||| ||||| || ||| ||||||||||||||||||||||||||    
T  15650650 gactcacaacatatgataatttttattgtcatcttcttccctcttcatcttca 15650702  T

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Target: chr2; HSP #3
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 49 - 143
Target Start/End: Original strand, 2581941 - 2582034
Alignment:
Q  49 taagattagtgatcaacggttggatttaaaaaagcacacatgacatacagtggactcacaacataggataacttctatggtcatcttcttccctc 143  Q
    ||||||| || |||||||||||||||||||| ||||||||||  |||| |||||||||||||||| ||||| |||||| ||||||||||||||||    
T  2581941 taagattggtaatcaacggttggatttaaaa-agcacacatgggataccgtggactcacaacatatgataaattctattgtcatcttcttccctc 2582034  T

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Target: chr2; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 58 - 140
Target Start/End: Original strand, 34039420 - 34039501
Alignment:
Q  58 tgatcaacggttggatttaaaaaagcacacatgacatacagtggactcacaacataggataacttctatggtcatcttcttcc 140  Q
    |||||||||||||||||||||||| |||||||||||||| || ||||||||||||| ||||| || ||| |||||||||||||    
T  34039420 tgatcaacggttggatttaaaaaa-cacacatgacataccgtagactcacaacatacgataatttttattgtcatcttcttcc 34039501  T

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Target: chr2; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 42028964 - 42028851
Alignment:
Q  1 ctccgttaatattttgcaaaatctattaacttctttccacatgtcagttaagattagtgatcaacggttggatttaaaaaagcacacatgacatacagtg 100  Q
    |||||||| ||||||||||||||| |||||| ||||||||||||| |||||| ||  || |    |||||||||| |||||||||||||| |||||  ||    
T  42028964 ctccgttagtattttgcaaaatctgttaactcctttccacatgtcggttaaggttcttgct----ggttggattt-aaaaagcacacatggcataccctg 42028870  T
Q  101 gactcacaacataggataa 119  Q
    ||||||||||||| |||||    
T  42028869 gactcacaacatacgataa 42028851  T

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Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 5564169 - 5564249
Alignment:
Q  1 ctccgttaatattttgcaaaatctattaacttctttccacatgtcagttaagattagtgatcaacggttggatttaaaaaa 81  Q
    |||||||||  ||||||||||||||||||   |||||||||||||| ||| |||| | |||||| || |||||||||||||    
T  5564169 ctccgttaaatttttgcaaaatctattaaacactttccacatgtcatttaggatttgggatcaatggctggatttaaaaaa 5564249  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 1624982 - 1624908
Alignment:
Q  1 ctccgttaatattttgcaaaatctattaacttctttccacatgtcagttaagattagtgatcaacggttggattt 75  Q
    |||||||||| |||| |||||  ||||||| | | ||||||||||| |||||||| |||||||| |||| |||||    
T  1624982 ctccgttaatttttttcaaaaattattaacctttgtccacatgtcatttaagatttgtgatcaatggttagattt 1624908  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 80
Target Start/End: Complemental strand, 6209036 - 6208992
Alignment:
Q  36 tccacatgtcagttaagattagtgatcaacggttggatttaaaaa 80  Q
    ||||||||||| |||||||| |||||||| |||| ||||||||||    
T  6209036 tccacatgtcatttaagattggtgatcaagggttagatttaaaaa 6208992  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 123
Target Start/End: Original strand, 10477455 - 10477574
Alignment:
Q  4 cgttaatattttgcaaaatctattaacttctttccacatgtcagttaagattagtgatcaacggttggatttaaaaaagcacacatgacatacagtggac 103  Q
    ||||||| ||||||||||| | ||||   |||||||||| ||| ||| |||| |||||||| || || |||||||||| ||||||||  ||||| ||||     
T  10477455 cgttaattttttgcaaaatatgttaaacactttccacatatcatttaggatttgtgatcaatggctgaatttaaaaaa-cacacatggtatacaatggag 10477553  T
Q  104 tcac-aacataggataacttc 123  Q
     ||| |||||| |||||||||    
T  10477554 acacgaacatatgataacttc 10477574  T

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Target: scaffold0007 (Bit Score: 65; Significance: 9e-29; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 145875 - 145727
Alignment:
Q  1 ctccgttaatattttgcaaaatctattaacttctttccacatgtcagttaagattagtgatcaacggttggatttaaaaaagcacacatgacatacagtg 100  Q
    |||||||||||||||| ||||| | |||||||  | |||||||||  |||| ||| ||||||||| ||||||||||||||| | ||||||| ||||| ||    
T  145875 ctccgttaatattttgtaaaatttgttaactt--tgccacatgtcttttaatattggtgatcaacagttggatttaaaaaaac-cacatgatatacaatg 145779  T
Q  101 gactcacaacataggataacttctatggtcatcttcttccctcttcatcttc 152  Q
    ||||||||||||| ||||||||| ||| |||| ||||||| |||||||||||    
T  145778 gactcacaacatatgataacttccatgttcatattcttccatcttcatcttc 145727  T

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Target: scaffold0369 (Bit Score: 62; Significance: 5e-27; HSPs: 1)
Name: scaffold0369
Description:

Target: scaffold0369; HSP #1
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 18 - 151
Target Start/End: Original strand, 13031 - 13163
Alignment:
Q  18 aaaatctattaacttctttccacatgtcagttaagattagtgatcaacggttggatttaaaaaagcacacatgacatacagtggactcacaacataggat 117  Q
    ||||||||||||||  |||||||||||||||||| ||| |||||||||||||| |||| || ||||| ||||| ||||| ||||||||| |||| | |||    
T  13031 aaaatctattaactcttttccacatgtcagttaaaattggtgatcaacggttgaattt-aagaagcagacatggcatactgtggactcaaaacaaatgat 13129  T
Q  118 aacttctatggtcatcttcttccctcttcatctt 151  Q
    ||||||||| ||||| | | ||||||||||||||    
T  13130 aacttctattgtcatttccatccctcttcatctt 13163  T

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