View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11870_high_7 (Length: 588)
Name: NF11870_high_7
Description: NF11870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11870_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 342
Target Start/End: Original strand, 1033857 - 1034206
Alignment:
| Q |
1 |
tcatcagcgagtgactctcaaaagcaagaactaattttagatacagactgaatttcacatcaatgttgaccttgctgagcttggggtgtctattattgat |
100 |
Q |
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| T |
1033857 |
tcatcagcgagtgactctcaaaagcaacaactaattttagatacagactgaatttcacatcaatgttgaccttgctgagcttggggtgtctattattgat |
1033956 |
T |
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| Q |
101 |
catataccagaagaaattttgtgcctgtctgttcagaatcttgttctggcat-----atttgactggtttaggact----cggaatcaccaagtaagatt |
191 |
Q |
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| T |
1033957 |
catataccagaagaaattttgtgcctgtctgttcagaatcttg-tatggcatatttaatttgactggtttgggactcggccggaatcattaagtaagatt |
1034055 |
T |
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| Q |
192 |
tgcatttacttaacagatgcatctttgaattcgtttacaacatggaagatggatatttatatgttttcagttacattttctttagtttccttgtgaaaat |
291 |
Q |
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| T |
1034056 |
tgcatttactcaacagatgcatctttgaattcgtttacaacatggaagatggatatttatatgttttcagttacattttctttagtttccttgtgaaaat |
1034155 |
T |
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| Q |
292 |
acagttcaaacctaatatcttgttgaccggtacaactcagccaatatttaa |
342 |
Q |
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| T |
1034156 |
acagttcaaacctaatatcttgttgaccggtacaactcagccaatatttaa |
1034206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 12 - 388
Target Start/End: Complemental strand, 50832206 - 50831828
Alignment:
| Q |
12 |
tgactctcaaaagcaagaactaattttagatacagact--gaatttcacatcaatgttgaccttgctgagcttggggtgtctattattgatcatatacca |
109 |
Q |
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| T |
50832206 |
tgactctcaaaagcaacaactaatgtcagatacagactttgagtttcacatcaatgttgatcttgctgagcttggggtgtctattattgaccatacaccg |
50832107 |
T |
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| Q |
110 |
gaagaaattttgtgcctgtctgttcagaatcttgttctggcatatttgactggtttaggactcggaatcaccaagtaagatttgcatttacttaacagat |
209 |
Q |
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| T |
50832106 |
gaagaaattttgtacctgtctattcagaatcttgttctggcatattcgactggtttgggctccggaatcagtaggtgagatttgcatttagtcaacatat |
50832007 |
T |
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| Q |
210 |
gcatctttgaattcgtttacaacatggaagatggatatttatatgttttcagttacattttctttagtttccttgtgaaaatacagttcaaacctaatat |
309 |
Q |
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| T |
50832006 |
gcatctttgaattcgtttgcaacatgaaaaatggacatttatatattttcagttacattttctcaagtttcctggtgaaaatacagttcatacctaatat |
50831907 |
T |
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| Q |
310 |
cttgttgaccggtacaactcagccaatatttaaaatgaccatataagacatttttgtctggttatcccgttatttacaa |
388 |
Q |
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| T |
50831906 |
cttgttgactggtacaactcagccaagatttaaaataactatacaagacatttttgtctggttgtcccattatgtacaa |
50831828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 124 - 355
Target Start/End: Original strand, 4515652 - 4515883
Alignment:
| Q |
124 |
cctgtctgttcagaatcttgttctggcatatttgactggtttaggactcggaatcaccaagtaagatttgcatttacttaa-cagatgcatctttgaatt |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| | |||||||||||||||||| || |||||||||||| ||||| |
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| T |
4515652 |
cctgtctgttcagaatcttgttctggcatatttgactggtttgggattcggaatcactaggtaagatttgcatttactcaaacagatgcatctt-gaatt |
4515750 |
T |
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| Q |
223 |
cgtttacaacatggaagatggatatttatatgttttcagttacattttctttagtttccttgtgaaaatacagttcaaacctaatatcttgttgaccggt |
322 |
Q |
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| T |
4515751 |
cgtttacaacatggaagatggatatttatatgttttcagttacattttctttagtttcccggtgaaaataaagttcaaacctaatgtcttgttgactggg |
4515850 |
T |
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| Q |
323 |
acaactcagccaatatttaaaatgaccatataa |
355 |
Q |
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| T |
4515851 |
acaactcagccaatatttaaaatgaccatataa |
4515883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 4516356 - 4516411
Alignment:
| Q |
1 |
tcatcagcgagtgactctcaaaagcaagaactaattttagatacagactgaatttc |
56 |
Q |
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| T |
4516356 |
tcatcagcgaatgactctcaaaagcaacaactaattttagatacagactgagtttc |
4516411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 477 - 529
Target Start/End: Complemental strand, 50831228 - 50831176
Alignment:
| Q |
477 |
gaagctcagtgggctttatgaatatcaaactactgccgcatcagttgatccaa |
529 |
Q |
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| T |
50831228 |
gaagctcggtaggctttctgaatctcaaactactgccgcatcagttgatccaa |
50831176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 427 - 479
Target Start/End: Complemental strand, 50831554 - 50831502
Alignment:
| Q |
427 |
taccattgactctaacgccagttctactcaggtctcagagagttgtgtcagaa |
479 |
Q |
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| T |
50831554 |
taccattaactccaacaccagttctattcaggcctcagagagttgtgtcagaa |
50831502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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