View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11870_low_1 (Length: 916)
Name: NF11870_low_1
Description: NF11870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11870_low_1 |
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| [»] scaffold0406 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 691; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 691; E-Value: 0
Query Start/End: Original strand, 17 - 873
Target Start/End: Complemental strand, 19292748 - 19291899
Alignment:
| Q |
17 |
acatcaactattgtcacaagaggaggatgtagaattttaaagattaattatgatacctattgacatcaatgcatggagata----atttcacaaatgtaa |
112 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |
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| T |
19292748 |
acatcaactattgtcacaagaggtggatgtagaattttaaagattaattatgatacctattgagatcaatgcatggagatatataatttcacaaatgtaa |
19292649 |
T |
|
| Q |
113 |
gatttagtgatgagaaactatactaggatttcttgaaatatgccttagggaggggttgaaattgatgcatatttcaagaacattttagagaaatttagaa |
212 |
Q |
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| T |
19292648 |
gattttgcgatgagaaactatactaggatttcttggaatatgccttagggaggggttgaaattgatgcatatttcaagaacattttagagaaatttagaa |
19292549 |
T |
|
| Q |
213 |
tatatagcctaaagttgctacatatatttgtgtattgttctgctaaaaccaagattagcttataggctaaaaacatccatcataatttaaacttgaaaag |
312 |
Q |
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| T |
19292548 |
ta----gcctaaagttgctacatat--ttgtgtattgttctgctaaaaccaagattagcttatagcctaaaaacatccatcacaatttaaacttgaaaag |
19292455 |
T |
|
| Q |
313 |
ccaaacaaaaatctaaataagtccacttctagaagcaactttagaaacctataaatagacaaacatgtgtgcaattgtattcaaacctttgatatgtaat |
412 |
Q |
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||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19292454 |
ccaaacaaaaatctagataaatccacttctagaagcaactttagaaacctataaatagacaaacatgtgtgcaattgtattcaaacctttgatatgtaat |
19292355 |
T |
|
| Q |
413 |
gccaaataatattgaaagcttcactaaactctctcttgtctcatgttactaaaattgaaacttattgctcattttagtccctctttagattgaaaattgc |
512 |
Q |
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| T |
19292354 |
gccaaataatattgaaagcttcactaaactctctcttgtctcatgttactaaaattgaaacttattgctcattttagtccctctttagattgaaaattgc |
19292255 |
T |
|
| Q |
513 |
cctaattattgtttaatattatatattcaggaaatcgatcgcaaagcaagagaagattaaatagaaaggcaacctgcatgtcatgtagttactgcctaaa |
612 |
Q |
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||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
19292254 |
cctaattattgtttaatgttatatattcaggaa----atcgcaaagcaagagaagattaaatagaaaggcaacctgcatgtcatgtagttactgcctaga |
19292159 |
T |
|
| Q |
613 |
gatttggcaacatagaatttgcatttaggacatctcctccgtttattattcttagcagccgggcgcgtcaacataccatcttctttctccctcttgtccg |
712 |
Q |
| |
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| T |
19292158 |
gatttggcaacatagaatttgcatttaggacatctcctcagtttatt-ttcttagcagccgggcgcgtcaacataccatcttctttctccctcctgtcgg |
19292060 |
T |
|
| Q |
713 |
cgttcagcttctcaaacccgctgcattcaatcccttcatgccatggaactttaaattgtgcacataacatcctattacaattaggacatattgaattctt |
812 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19292059 |
tgttcagcttctcaaacccgctgcattcaatcccttcatgccatggaactttacattgtgcacataacatcctattacaattaggacatattgaattctt |
19291960 |
T |
|
| Q |
813 |
aacagcgtcggttccatggttgatcaagagagcgggacattctggaaatggacaatagaat |
873 |
Q |
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|||| | |||||||||| |||||||| |||||| ||||||||||| |||||||||||| |
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| T |
19291959 |
aacaacctcggttccatcattgatcaaaagagcgaaacattctggaagaggacaatagaat |
19291899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 612 - 872
Target Start/End: Complemental strand, 19270825 - 19270568
Alignment:
| Q |
612 |
agatttggcaacatagaatttgcatttaggacatctcctccgtttattattcttagcagccgggcgcgtcaacataccatcttctttctccctcttgtcc |
711 |
Q |
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| T |
19270825 |
agatttggcaacataaattctgcatttaggacatcgcctccacttcttatccttagcaa---ggcgcatcaacataacatcttctttcttcctctcgtcc |
19270729 |
T |
|
| Q |
712 |
gcgttcagcttctcaaacccgctgcattcaatcccttcatgccatggaactttaaattgtgcacataacatcctattacaattaggacatattgaattct |
811 |
Q |
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| T |
19270728 |
gcgttcagcttctcaaactcgctgcattcgattccttcatgccatggaaccttacattttgcacaaaacatcctattacaattaggacattctgagtttt |
19270629 |
T |
|
| Q |
812 |
taacagcgtcggttccatggttgatcaagagagcgggacattctggaaatggacaatagaa |
872 |
Q |
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| T |
19270628 |
taacagtatcgattccgtcattgatcaaaagagcagaacagtctgcaaagggacagtagaa |
19270568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 681 - 875
Target Start/End: Complemental strand, 19255051 - 19254857
Alignment:
| Q |
681 |
caacataccatcttctttctccctcttgtccgcgttcagcttctcaaacccgctgcattcaatcccttcatgccatggaactttaaattgtgcacataac |
780 |
Q |
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||||||| |||| ||||||||||||| |||||| |||||| |||| ||| | ||||||||||||||||||||||||||||||||| |||||||||| ||| |
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| T |
19255051 |
caacataacatcctctttctccctctcgtccgcattcagcgtctcgaactcactgcattcaatcccttcatgccatggaactttacattgtgcacagaac |
19254952 |
T |
|
| Q |
781 |
atcctattacaattaggacatattgaattcttaacagcgtcggttccatggttgatcaagagagcgggacattctggaaatggacaatagaattt |
875 |
Q |
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| T |
19254951 |
atcctttcacaataaggacattctgctttcataacagcctccgtttcatcattgatcaacagagctgaacagtctgcaaagggacagtagaattt |
19254857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 745 - 877
Target Start/End: Complemental strand, 19314983 - 19314851
Alignment:
| Q |
745 |
ccttcatgccatggaactttaaattgtgcacataacatcctattacaattaggacatattgaattcttaacagcgtcggttccatggttgatcaagagag |
844 |
Q |
| |
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||||||||||||||||||||| |||||||||| |||||||||||||||||||| ||| |||||| ||||||| || ||||||| | |||||| || | |
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| T |
19314983 |
ccttcatgccatggaactttacattgtgcacaaaacatcctattacaattagggcattctgaatttctaacagcttccgttccatcatcgatcaaaagtg |
19314884 |
T |
|
| Q |
845 |
cgggacattctggaaatggacaatagaatttat |
877 |
Q |
| |
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| | ||| ||||||||||||||||||||||||| |
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| T |
19314883 |
ctgaacagtctggaaatggacaatagaatttat |
19314851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 767 - 817
Target Start/End: Complemental strand, 19260483 - 19260433
Alignment:
| Q |
767 |
attgtgcacataacatcctattacaattaggacatattgaattcttaacag |
817 |
Q |
| |
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|||||||| | |||||||||||||||||||||||| |||||| ||||||| |
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| T |
19260483 |
attgtgcataaaacatcctattacaattaggacattctgaatttttaacag |
19260433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 361 - 411
Target Start/End: Complemental strand, 33798907 - 33798857
Alignment:
| Q |
361 |
ctataaatagacaaacatgtgtgcaattgtattcaaacctttgatatgtaa |
411 |
Q |
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| T |
33798907 |
ctataaatagataagcatatgtgcaattgtattcaagcctttgagatgtaa |
33798857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 682 - 760
Target Start/End: Original strand, 13206731 - 13206809
Alignment:
| Q |
682 |
aacataccatcttctttctccctcttgtccgcgttcagcttctcaaacccgctgcattcaatcccttcatgccatggaa |
760 |
Q |
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| T |
13206731 |
aacatatcatcttcttcccgcctctcatccgcattcatcttctaaaagtcggtgcattcaatcccttcatgccatggaa |
13206809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0406 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0406
Description:
Target: scaffold0406; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 359 - 436
Target Start/End: Original strand, 6313 - 6389
Alignment:
| Q |
359 |
acctataaatagacaaacatgtgtgcaattgtattcaaacctttgatatgtaatgccaaataatattgaaagcttcac |
436 |
Q |
| |
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| T |
6313 |
acctataaatagacttatatgggtgaaattgtattcaagcctttgagatgcaatgtc-aataatattgaaggcttcac |
6389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 359 - 436
Target Start/End: Original strand, 51246655 - 51246731
Alignment:
| Q |
359 |
acctataaatagacaaacatgtgtgcaattgtattcaaacctttgatatgtaatgccaaataatattgaaagcttcac |
436 |
Q |
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| T |
51246655 |
acctataagtagacttatatgggtgcaattgtattcaagcctttgggatgtaatgtc-aataatattgaaggcttcac |
51246731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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