View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11870_low_10 (Length: 557)
Name: NF11870_low_10
Description: NF11870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11870_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 485; Significance: 0; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 8 - 541
Target Start/End: Complemental strand, 8477563 - 8477026
Alignment:
| Q |
8 |
tggacatcatcagcatattttggaagcatagatgtatcatgaaaaggagggtcacttggtgaatctccaaaaagacaatcatcaacattaattatgataa |
107 |
Q |
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| T |
8477563 |
tggacaacatcagcatattttggaagcatagaggtatcatgaaaaggagggtcacttggtgaatctccaaaaagacaatcatcaacattaattatgataa |
8477464 |
T |
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| Q |
108 |
aatttgcattcatatgaacatcttcataatctccaatcttaaggaatccttgagcttccttaacatattcaacaatagaattaaaatgttgcaaacaatt |
207 |
Q |
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| T |
8477463 |
aatttgcattcatatgaacatcttcataatctccaatcttaaggaatccttcagcttccttaacatattcaacaatagaattaaaatgttgcaaacaatt |
8477364 |
T |
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| Q |
208 |
tccgtaatgagatttttcattcatatcacgactttgtgcaactaattttgtgataagatcgactgtgttggttacgttggtatgaacattttcaatggag |
307 |
Q |
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| T |
8477363 |
tccgtaatgagatttttcattcatatcacgactttgtgcaactaatttcgtgattagatcgactgtgttggttacgttggtatgaacattttcaatggag |
8477264 |
T |
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| Q |
308 |
tattgtgcaaggctaacgagatctcgacctacaccagcagatcttgatttgagaaaagttgaacaaaaagaagggtcttttgcagtcttgcaaatggttt |
407 |
Q |
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| T |
8477263 |
tattgtgcaaggctaacgaggtctcgacctacaccagcaggtcttgatttgagaaaagttgaacaaaaagaagggtcttttgcagtcttgcaaatggttt |
8477164 |
T |
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| Q |
408 |
caacgttgcaatgacaaatcatgaaagcaaggctggttgtggtcatacaattgagaggaacaaatc----atagacaataatttttaccagtttggagtg |
503 |
Q |
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| T |
8477163 |
caacgttgcaatgacaaatcatgaaagcaaggctggttgtggtcatacaattgagaggaacaaatctttaatagacaataatttttaccagttgggagtg |
8477064 |
T |
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| Q |
504 |
aattgaccaaaaggagagtcaaatgcattatgctatgt |
541 |
Q |
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| T |
8477063 |
aattgaccaaaaggagagtcaaatgcattatgccatgt |
8477026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 223 - 375
Target Start/End: Original strand, 8633923 - 8634075
Alignment:
| Q |
223 |
ttcattcatatcacgactttgtgcaactaattttgtgataagatcgactgtgttggttacgttggtatgaacattttcaatggagtattgtgcaaggcta |
322 |
Q |
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| T |
8633923 |
ttcattgatatcacgactttgtgcatttagtttcttgattagatcgacagtgtaggttatattagcatgaacatattcaatggagtatttgtcaaggcta |
8634022 |
T |
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| Q |
323 |
acgagatctcgacctacaccagcagatcttgatttgagaaaagttgaacaaaa |
375 |
Q |
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| T |
8634023 |
acgagatctccacttacaccatgaggccttgatttgagaaaagttgaacaaaa |
8634075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 223 - 386
Target Start/End: Complemental strand, 8638360 - 8638197
Alignment:
| Q |
223 |
ttcattcatatcacgactttgtgcaactaattttgtgataagatcgactgtgttggttacgttggtatgaacattttcaatggagtattgtgcaaggcta |
322 |
Q |
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| T |
8638360 |
ttcattgatatcacgactttgtgcatttagtttcttgattaaatcaactgtgtaggttatattagcatgaacatattcaatggaatatttgtcaaggcta |
8638261 |
T |
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| Q |
323 |
acgagatctcgacctacaccagcagatcttgatttgagaaaagttgaacaaaaagaagggtctt |
386 |
Q |
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| T |
8638260 |
acaagatctccacttataccaggaggtcttgatttgagaaaagttgaacaaaatgaagggtctt |
8638197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 235 - 376
Target Start/End: Complemental strand, 8458917 - 8458776
Alignment:
| Q |
235 |
acgactttgtgcaactaattttgtgataagatcgactgtgttggttacgttggtatgaacattttcaatggagtattgtgcaaggctaacgagatctcga |
334 |
Q |
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| T |
8458917 |
acgacttcgtgcgattagttttgtgattagattgattgtgttggttattttggcatgagcatcttcaatggagtattttgcaaggctaacaaggtctcca |
8458818 |
T |
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| Q |
335 |
cctacaccagcagatcttgatttgagaaaagttgaacaaaaa |
376 |
Q |
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| T |
8458817 |
tgtacactacgaggtcttgatttgagaaaagttgaacaaaaa |
8458776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 258 - 376
Target Start/End: Complemental strand, 8463591 - 8463473
Alignment:
| Q |
258 |
tgataagatcgactgtgttggttacgttggtatgaacattttcaatggagtattgtgcaaggctaacgagatctcgacctacaccagcagatcttgattt |
357 |
Q |
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| T |
8463591 |
tgattagattgattgtgttggttattttggcatgagcatcttcaatggagtatttagcaaggctaacaaggtctccatgtacactacgaggtcttgattt |
8463492 |
T |
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| Q |
358 |
gagaaaagttgaacaaaaa |
376 |
Q |
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| T |
8463491 |
gagaaaagttgaacaaaaa |
8463473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 238 - 387
Target Start/End: Complemental strand, 8503820 - 8503671
Alignment:
| Q |
238 |
actttgtgcaactaattttgtgataagatcgactgtgttggttacgttggtatgaacattttcaatggagtattgtgcaaggctaacgagatctcgacct |
337 |
Q |
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| T |
8503820 |
actttgtgcgattagttttgtgattagagtgactgtattcgatacattggtatgaagcacgtcaatggtgtattgtgcaagactattgaggtcttgacct |
8503721 |
T |
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| Q |
338 |
acaccagcagatcttgatttgagaaaagttgaacaaaaagaagggtcttt |
387 |
Q |
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| T |
8503720 |
acaccacctggctttgatttgagaagagttaaacaaaaagaagggtcttt |
8503671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 22 - 118
Target Start/End: Original strand, 8633722 - 8633818
Alignment:
| Q |
22 |
atattttggaagcatagatgtatcatgaaaaggagggtcacttggtgaatctccaaaaagacaatcatcaacattaattatgataaaatttgcattc |
118 |
Q |
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|||||||||||||| ||| ||||||||||| |||||||| |||||||||||| ||| ||||| | || |||| |||||||| ||| ||||||| |
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| T |
8633722 |
atattttggaagcaaagaggtatcatgaaatatagggtcaccaggtgaatctccataaatacaattgttaatattagttatgatagaatctgcattc |
8633818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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