View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11870_low_11 (Length: 528)
Name: NF11870_low_11
Description: NF11870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11870_low_11 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 466; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 20 - 513
Target Start/End: Complemental strand, 28046831 - 28046338
Alignment:
| Q |
20 |
tgtacctgataatcgttccccttttcagcggctttgtgagattaatggtgactttagttctcaaaaaacgacccaaacggtggctttctttagcatcagc |
119 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
28046831 |
tgtacctaataattgttccccttttcagcggctttgtgagattaatggtgactttagttctcaaaaaacgacccagacggtggctttctttaacatcagc |
28046732 |
T |
|
| Q |
120 |
ttcaacaaattgacccatcacattaccgagcttttttgccatggattcgaatcttaacttaaggggtaaatcataaatccttgcccaaaatgacattgaa |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28046731 |
ttcaacaaattgacccatcacattaccgagcttttttgccatggattcgaatcttaacttaaggggtaaatcataaatccttgcccaaaatgacattgaa |
28046632 |
T |
|
| Q |
220 |
ttcatttctatttcagaaggttgttcagtacctgtaaccctcttcagtaccagaatatttctatcaaagctccaaggtccattttttatcacattttcca |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28046631 |
ttcatttctatttcagaaggttgttcagtacctgtaaccctcttcaataccagaatatttctatcaaagctccaaggtccattttttatcacattttcca |
28046532 |
T |
|
| Q |
320 |
tatcacgtttattacaaaaccggaaaaggtaaagattcttaccaagttcttgtgtttcaactggatttttgagcctccagaattccacaatcgtttgctt |
419 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28046531 |
gatcacgtttattacaaaaccggaaaaggtaaagattcttaccaagttcttgtgtttcaactggatttttgagcctccagaattccacaatcgtttgctt |
28046432 |
T |
|
| Q |
420 |
aaaagctctaacgttgtaagcattatcagtccaaagcttccctagcagagatctgccatatacctcctcttcaattggttcttcatcttcctct |
513 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28046431 |
aaaagctctaacattgtaagcattatcagtccaaagcttccctagcagagatctgccatatacctcctcttcaattggttcttcatcttcctct |
28046338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University