View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11870_low_12 (Length: 488)
Name: NF11870_low_12
Description: NF11870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11870_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 449; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 12 - 472
Target Start/End: Original strand, 36643256 - 36643716
Alignment:
| Q |
12 |
catcataagaggacacaagattccagagttgttttctatgcctagtaaacaagagaaggtgaagcaaacatctttattgaaagccttttcttgggtgatg |
111 |
Q |
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| T |
36643256 |
catcataagaggacacaagattccagagttgttttctatgcctagtaaacaagagaaggtgaagcaaacatctttattgaaagcctttgcttgggtgatg |
36643355 |
T |
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| Q |
112 |
ggcttgaccaagaaagtgcctatggtggggttgaatgctgttggccaacttttcagtaagagtctgagcaatgaggagttgaagttcatagttttgtcgg |
211 |
Q |
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| T |
36643356 |
ggcttgaccaagaaagtgcctatggtggggttgaatgctgttggccaacttttcagtaagagtctgagcaatgaggagttgaagttcatagttttgtcgg |
36643455 |
T |
|
| Q |
212 |
atggtacgtacgatctgtgtttgatgaatcacaaaatagttgatcaagtattgtaagttatgtaattctaccagggaagtgaaattctactagagatgtc |
311 |
Q |
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| T |
36643456 |
atggtacgtacgatctgtgtttgatgaatcacaaaataattgatcaagtattgtaagttatgtaattctaccagggaagtgaaattctactagagatgtc |
36643555 |
T |
|
| Q |
312 |
cacaaaacagaagagtatataggattttaatttaacagtatcttttgtatgcttacattatgaaatttctgtactattatcttctttgatatggaaacaa |
411 |
Q |
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| T |
36643556 |
cacaaaacagaagagtatataggattttaatttaacagtatcttttgtatgcttacattatgaaatttctgtactaatatcttctttgatatggaaacaa |
36643655 |
T |
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| Q |
412 |
agtaattgaaaattttctataaggtgtactatatgttgttctttaactatcattgaagctt |
472 |
Q |
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| T |
36643656 |
agtaattgaaaattttctataaggtgtactatatgttgttctttaactatcattgaagctt |
36643716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 89 - 233
Target Start/End: Complemental strand, 36650261 - 36650117
Alignment:
| Q |
89 |
tgaaagccttttcttgggtgatgggcttgaccaagaaagtgcctatggtggggttgaatgctgttggccaacttttcagtaagagtctgagcaatgagga |
188 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||| ||||||||||| |||| || |
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| T |
36650261 |
tgaaagcctttgcttgggtgatgggcttgaccaagaaagtgcccttggtcgggttcaatgctgttggccaacttttcagtgagagtctgagcgatgaaga |
36650162 |
T |
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| Q |
189 |
gttgaagttcatagttttgtcggatggtacgtacgatctgtgttt |
233 |
Q |
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| T |
36650161 |
gttgaagctcacagttttggccgatggcgcgtacgatttgtgttt |
36650117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 410
Target Start/End: Complemental strand, 36650020 - 36649959
Alignment:
| Q |
349 |
gtatcttttgtatgcttacattatgaaatttctgtactattatcttctttgatatggaaaca |
410 |
Q |
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||||||| |||||| ||||| ||||||||||||||||| | |||||||||||||||||| |
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| T |
36650020 |
gtatcttctgtatgtttacaaattgaaatttctgtactatgaatttctttgatatggaaaca |
36649959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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